Experiment: Bas21
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS03615 and ECOLIN_RS03620 are separated by 59 nucleotides ECOLIN_RS03620 and ECOLIN_RS03625 are separated by 332 nucleotides
ECOLIN_RS03615: ECOLIN_RS03615 - N-acetylglucosamine-6-phosphate deacetylase, at 739,552 to 740,700
_RS03615
ECOLIN_RS03620: ECOLIN_RS03620 - glucosamine-6-phosphate deaminase, at 740,760 to 741,560
_RS03620
ECOLIN_RS03625: ECOLIN_RS03625 - PTS N-acetyl glucosamine transporter subunit IIABC, at 741,893 to 743,839
_RS03625
Position (kb) 740
741
742 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 739.966 kb on - strand, within ECOLIN_RS03615 at 740.034 kb on - strand, within ECOLIN_RS03615 at 740.422 kb on - strand, within ECOLIN_RS03615 at 740.422 kb on - strand, within ECOLIN_RS03615 at 740.425 kb on - strand, within ECOLIN_RS03615 at 740.697 kb on - strand at 740.697 kb on - strand at 740.697 kb on - strand at 740.697 kb on - strand at 740.697 kb on - strand at 740.697 kb on - strand at 741.132 kb on - strand, within ECOLIN_RS03620 at 741.616 kb on + strand at 741.869 kb on + strand at 742.000 kb on + strand at 742.000 kb on + strand at 742.130 kb on + strand, within ECOLIN_RS03625 at 742.174 kb on + strand, within ECOLIN_RS03625
Per-strain Table
Position Strand Gene LocusTag Fraction Bas21 remove 739,966 - ECOLIN_RS03615 0.36 -0.9 740,034 - ECOLIN_RS03615 0.42 +2.7 740,422 - ECOLIN_RS03615 0.76 -2.3 740,422 - ECOLIN_RS03615 0.76 -1.0 740,425 - ECOLIN_RS03615 0.76 -5.9 740,697 - -2.8 740,697 - -2.7 740,697 - -2.4 740,697 - -0.4 740,697 - -2.6 740,697 - -2.6 741,132 - ECOLIN_RS03620 0.46 -0.5 741,616 + +1.7 741,869 + -0.2 742,000 + -3.3 742,000 + +0.1 742,130 + ECOLIN_RS03625 0.12 -0.4 742,174 + ECOLIN_RS03625 0.14 -5.7
Or see this region's nucleotide sequence