Experiment: Bas21
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS02000 and ECOLIN_RS02005 are separated by 10 nucleotides ECOLIN_RS02005 and ECOLIN_RS02010 overlap by 8 nucleotides ECOLIN_RS02010 and ECOLIN_RS02020 are separated by 242 nucleotides
ECOLIN_RS02000: ECOLIN_RS02000 - (Fe-S)-binding protein, at 404,577 to 405,296
_RS02000
ECOLIN_RS02005: ECOLIN_RS02005 - LutB/LldF family L-lactate oxidation iron-sulfur protein, at 405,307 to 406,734
_RS02005
ECOLIN_RS02010: ECOLIN_RS02010 - lactate utilization protein C, at 406,727 to 407,422
_RS02010
ECOLIN_RS02020: ECOLIN_RS02020 - protein YkgH, at 407,665 to 408,333
_RS02020
Position (kb) 405
406
407 Strain fitness (log2 ratio) -1
0
1
2 at 404.506 kb on - strand at 404.844 kb on + strand, within ECOLIN_RS02000 at 404.844 kb on + strand, within ECOLIN_RS02000 at 404.897 kb on + strand, within ECOLIN_RS02000 at 404.927 kb on + strand, within ECOLIN_RS02000 at 404.947 kb on + strand, within ECOLIN_RS02000 at 404.947 kb on + strand, within ECOLIN_RS02000 at 404.947 kb on + strand, within ECOLIN_RS02000 at 405.029 kb on + strand, within ECOLIN_RS02000 at 405.029 kb on + strand, within ECOLIN_RS02000 at 405.190 kb on + strand, within ECOLIN_RS02000 at 405.303 kb on - strand at 405.908 kb on + strand, within ECOLIN_RS02005 at 406.003 kb on - strand, within ECOLIN_RS02005 at 406.011 kb on + strand, within ECOLIN_RS02005 at 406.242 kb on + strand, within ECOLIN_RS02005 at 406.823 kb on + strand, within ECOLIN_RS02010 at 407.121 kb on + strand, within ECOLIN_RS02010 at 407.314 kb on + strand, within ECOLIN_RS02010 at 407.430 kb on - strand at 407.497 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas21 remove 404,506 - +0.0 404,844 + ECOLIN_RS02000 0.37 +1.4 404,844 + ECOLIN_RS02000 0.37 -0.3 404,897 + ECOLIN_RS02000 0.44 +1.6 404,927 + ECOLIN_RS02000 0.49 +0.4 404,947 + ECOLIN_RS02000 0.51 +0.4 404,947 + ECOLIN_RS02000 0.51 +0.2 404,947 + ECOLIN_RS02000 0.51 +0.5 405,029 + ECOLIN_RS02000 0.63 +0.3 405,029 + ECOLIN_RS02000 0.63 +0.2 405,190 + ECOLIN_RS02000 0.85 -0.8 405,303 - +0.5 405,908 + ECOLIN_RS02005 0.42 +0.6 406,003 - ECOLIN_RS02005 0.49 -1.2 406,011 + ECOLIN_RS02005 0.49 +0.3 406,242 + ECOLIN_RS02005 0.65 -0.2 406,823 + ECOLIN_RS02010 0.14 +0.4 407,121 + ECOLIN_RS02010 0.57 +0.3 407,314 + ECOLIN_RS02010 0.84 +0.0 407,430 - -0.6 407,497 + +2.4
Or see this region's nucleotide sequence