Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS00240

Experiment: Bas21

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS00235 and ECOLIN_RS00240 overlap by 4 nucleotidesECOLIN_RS00240 and ECOLIN_RS00245 are separated by 58 nucleotides ECOLIN_RS00235: ECOLIN_RS00235 - FAD-dependent oxidoreductase, at 46,141 to 47,427 _RS00235 ECOLIN_RS00240: ECOLIN_RS00240 - ferredoxin-like protein FixX, at 47,424 to 47,711 _RS00240 ECOLIN_RS00245: ECOLIN_RS00245 - MFS transporter, at 47,770 to 49,101 _RS00245 Position (kb) 47 48Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 46.819 kb on + strand, within ECOLIN_RS00235at 46.822 kb on - strand, within ECOLIN_RS00235at 46.979 kb on + strand, within ECOLIN_RS00235at 47.061 kb on + strand, within ECOLIN_RS00235at 47.061 kb on + strand, within ECOLIN_RS00235at 47.565 kb on + strand, within ECOLIN_RS00240at 47.565 kb on + strand, within ECOLIN_RS00240at 47.727 kb on + strandat 47.863 kb on + strandat 47.863 kb on + strandat 47.867 kb on + strandat 47.867 kb on + strandat 47.993 kb on - strand, within ECOLIN_RS00245at 47.993 kb on - strand, within ECOLIN_RS00245at 48.115 kb on - strand, within ECOLIN_RS00245at 48.224 kb on - strand, within ECOLIN_RS00245at 48.410 kb on + strand, within ECOLIN_RS00245

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas21
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46,819 + ECOLIN_RS00235 0.53 +0.5
46,822 - ECOLIN_RS00235 0.53 +5.9
46,979 + ECOLIN_RS00235 0.65 -0.4
47,061 + ECOLIN_RS00235 0.71 +0.2
47,061 + ECOLIN_RS00235 0.71 +0.4
47,565 + ECOLIN_RS00240 0.49 -1.3
47,565 + ECOLIN_RS00240 0.49 +0.6
47,727 + -0.0
47,863 + -0.7
47,863 + +0.8
47,867 + +0.4
47,867 + +0.2
47,993 - ECOLIN_RS00245 0.17 +0.2
47,993 - ECOLIN_RS00245 0.17 -0.3
48,115 - ECOLIN_RS00245 0.26 -0.2
48,224 - ECOLIN_RS00245 0.34 +0.2
48,410 + ECOLIN_RS00245 0.48 +0.1

Or see this region's nucleotide sequence