Experiment: Bas21
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS18030 and ECOLIN_RS18035 are separated by 10 nucleotides ECOLIN_RS18035 and ECOLIN_RS18040 overlap by 11 nucleotides ECOLIN_RS18040 and ECOLIN_RS18045 are separated by 17 nucleotides ECOLIN_RS18045 and ECOLIN_RS18050 overlap by 4 nucleotides
ECOLIN_RS18030: ECOLIN_RS18030 - PTS N-acetylgalactosamine transporter subunit IIB, at 3,636,576 to 3,637,049
_RS18030
ECOLIN_RS18035: ECOLIN_RS18035 - PTS N-acetylgalactosamine transporter subunit IIC, at 3,637,060 to 3,637,839
_RS18035
ECOLIN_RS18040: ECOLIN_RS18040 - PTS N-acetylgalactosamine transporter subunit IID, at 3,637,829 to 3,638,707
_RS18040
ECOLIN_RS18045: ECOLIN_RS18045 - PTS galactosamine/N-acetylgalactosamine transporter subunit IIA, at 3,638,725 to 3,639,159
_RS18045
ECOLIN_RS18050: ECOLIN_RS18050 - N-acetylglucosamine-6-phosphate deacetylase, at 3,639,156 to 3,640,289
_RS18050
Position (kb) 3637
3638
3639 Strain fitness (log2 ratio) -1
0
1
2 at 3637.207 kb on - strand, within ECOLIN_RS18035 at 3637.318 kb on - strand, within ECOLIN_RS18035 at 3637.389 kb on + strand, within ECOLIN_RS18035 at 3637.389 kb on + strand, within ECOLIN_RS18035 at 3637.389 kb on + strand, within ECOLIN_RS18035 at 3637.510 kb on + strand, within ECOLIN_RS18035 at 3637.533 kb on + strand, within ECOLIN_RS18035 at 3637.672 kb on + strand, within ECOLIN_RS18035 at 3637.907 kb on + strand at 3637.908 kb on - strand at 3637.908 kb on - strand at 3637.948 kb on + strand, within ECOLIN_RS18040 at 3638.005 kb on + strand, within ECOLIN_RS18040 at 3638.065 kb on + strand, within ECOLIN_RS18040 at 3638.149 kb on + strand, within ECOLIN_RS18040 at 3638.171 kb on - strand, within ECOLIN_RS18040 at 3638.259 kb on + strand, within ECOLIN_RS18040 at 3638.298 kb on + strand, within ECOLIN_RS18040 at 3638.455 kb on + strand, within ECOLIN_RS18040 at 3638.455 kb on + strand, within ECOLIN_RS18040 at 3638.455 kb on + strand, within ECOLIN_RS18040 at 3638.455 kb on + strand, within ECOLIN_RS18040 at 3638.456 kb on - strand, within ECOLIN_RS18040 at 3638.495 kb on + strand, within ECOLIN_RS18040 at 3638.495 kb on + strand, within ECOLIN_RS18040 at 3638.495 kb on + strand, within ECOLIN_RS18040 at 3638.550 kb on + strand, within ECOLIN_RS18040 at 3638.601 kb on - strand, within ECOLIN_RS18040 at 3638.720 kb on - strand at 3638.722 kb on + strand at 3638.856 kb on + strand, within ECOLIN_RS18045 at 3638.856 kb on + strand, within ECOLIN_RS18045 at 3638.856 kb on + strand, within ECOLIN_RS18045 at 3638.857 kb on - strand, within ECOLIN_RS18045 at 3638.857 kb on - strand, within ECOLIN_RS18045 at 3639.238 kb on + strand at 3639.322 kb on + strand, within ECOLIN_RS18050 at 3639.323 kb on - strand, within ECOLIN_RS18050 at 3639.347 kb on - strand, within ECOLIN_RS18050 at 3639.470 kb on + strand, within ECOLIN_RS18050 at 3639.537 kb on + strand, within ECOLIN_RS18050 at 3639.696 kb on - strand, within ECOLIN_RS18050
Per-strain Table
Position Strand Gene LocusTag Fraction Bas21 remove 3,637,207 - ECOLIN_RS18035 0.19 -0.5 3,637,318 - ECOLIN_RS18035 0.33 +0.2 3,637,389 + ECOLIN_RS18035 0.42 +1.9 3,637,389 + ECOLIN_RS18035 0.42 +0.8 3,637,389 + ECOLIN_RS18035 0.42 -0.5 3,637,510 + ECOLIN_RS18035 0.58 +0.2 3,637,533 + ECOLIN_RS18035 0.61 +0.1 3,637,672 + ECOLIN_RS18035 0.78 +0.5 3,637,907 + +0.7 3,637,908 - +0.1 3,637,908 - -0.3 3,637,948 + ECOLIN_RS18040 0.14 +0.3 3,638,005 + ECOLIN_RS18040 0.20 +0.0 3,638,065 + ECOLIN_RS18040 0.27 +0.4 3,638,149 + ECOLIN_RS18040 0.36 -0.9 3,638,171 - ECOLIN_RS18040 0.39 -0.4 3,638,259 + ECOLIN_RS18040 0.49 -0.3 3,638,298 + ECOLIN_RS18040 0.53 -0.3 3,638,455 + ECOLIN_RS18040 0.71 -0.2 3,638,455 + ECOLIN_RS18040 0.71 +0.3 3,638,455 + ECOLIN_RS18040 0.71 -0.0 3,638,455 + ECOLIN_RS18040 0.71 -0.3 3,638,456 - ECOLIN_RS18040 0.71 +0.5 3,638,495 + ECOLIN_RS18040 0.76 +0.1 3,638,495 + ECOLIN_RS18040 0.76 -1.0 3,638,495 + ECOLIN_RS18040 0.76 +0.1 3,638,550 + ECOLIN_RS18040 0.82 +0.0 3,638,601 - ECOLIN_RS18040 0.88 -0.6 3,638,720 - -0.5 3,638,722 + +0.9 3,638,856 + ECOLIN_RS18045 0.30 -0.0 3,638,856 + ECOLIN_RS18045 0.30 +0.3 3,638,856 + ECOLIN_RS18045 0.30 -0.0 3,638,857 - ECOLIN_RS18045 0.30 -0.3 3,638,857 - ECOLIN_RS18045 0.30 +0.6 3,639,238 + +0.4 3,639,322 + ECOLIN_RS18050 0.15 +0.0 3,639,323 - ECOLIN_RS18050 0.15 +0.2 3,639,347 - ECOLIN_RS18050 0.17 -0.3 3,639,470 + ECOLIN_RS18050 0.28 -0.1 3,639,537 + ECOLIN_RS18050 0.34 -0.1 3,639,696 - ECOLIN_RS18050 0.48 -0.7
Or see this region's nucleotide sequence