Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS07375

Experiment: Bas21

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS07370 and ECOLIN_RS07375 are separated by 0 nucleotidesECOLIN_RS07375 and ECOLIN_RS07380 overlap by 8 nucleotides ECOLIN_RS07370: ECOLIN_RS07370 - inverse autotransporter invasin YchO, at 1,438,517 to 1,439,911 _RS07370 ECOLIN_RS07375: ECOLIN_RS07375 - two-component system response regulator NarL, at 1,439,912 to 1,440,562 _RS07375 ECOLIN_RS07380: ECOLIN_RS07380 - nitrate/nitrite two-component system sensor histidine kinase NarX, at 1,440,555 to 1,442,351 _RS07380 Position (kb) 1439 1440 1441Strain fitness (log2 ratio) -1 0 1at 1439.042 kb on - strand, within ECOLIN_RS07370at 1439.695 kb on - strand, within ECOLIN_RS07370at 1440.380 kb on - strand, within ECOLIN_RS07375

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas21
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1,439,042 - ECOLIN_RS07370 0.38 +0.6
1,439,695 - ECOLIN_RS07370 0.84 -0.2
1,440,380 - ECOLIN_RS07375 0.72 +0.9

Or see this region's nucleotide sequence