Experiment: Bas21
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS04345 and ECOLIN_RS04350 are separated by 271 nucleotides ECOLIN_RS04350 and ECOLIN_RS04355 are separated by 185 nucleotides ECOLIN_RS04355 and ECOLIN_RS04360 overlap by 4 nucleotides
ECOLIN_RS04345: ECOLIN_RS04345 - phosphoethanolamine transferase, at 878,477 to 880,060
_RS04345
ECOLIN_RS04350: ECOLIN_RS04350 - manganase accumulation protein MntS, at 880,332 to 880,460
_RS04350
ECOLIN_RS04355: ECOLIN_RS04355 - manganese-binding transcriptional regulator MntR, at 880,646 to 881,113
_RS04355
ECOLIN_RS04360: ECOLIN_RS04360 - anion transporter, at 881,110 to 882,228
_RS04360
Position (kb) 880
881
882 Strain fitness (log2 ratio) -1
0
1
2
3 at 880.166 kb on - strand at 880.389 kb on - strand, within ECOLIN_RS04350 at 880.389 kb on - strand, within ECOLIN_RS04350 at 880.402 kb on - strand, within ECOLIN_RS04350 at 880.408 kb on - strand, within ECOLIN_RS04350 at 880.440 kb on - strand, within ECOLIN_RS04350 at 880.511 kb on - strand at 880.541 kb on + strand at 880.615 kb on + strand at 881.545 kb on - strand, within ECOLIN_RS04360 at 881.739 kb on + strand, within ECOLIN_RS04360 at 882.044 kb on + strand, within ECOLIN_RS04360 at 882.080 kb on + strand, within ECOLIN_RS04360
Per-strain Table
Position Strand Gene LocusTag Fraction Bas21 remove 880,166 - +0.8 880,389 - ECOLIN_RS04350 0.44 -0.2 880,389 - ECOLIN_RS04350 0.44 +0.2 880,402 - ECOLIN_RS04350 0.54 +3.1 880,408 - ECOLIN_RS04350 0.59 -0.4 880,440 - ECOLIN_RS04350 0.84 -0.0 880,511 - -0.1 880,541 + -0.4 880,615 + -0.0 881,545 - ECOLIN_RS04360 0.39 -0.1 881,739 + ECOLIN_RS04360 0.56 -0.2 882,044 + ECOLIN_RS04360 0.83 +0.5 882,080 + ECOLIN_RS04360 0.87 +1.5
Or see this region's nucleotide sequence