Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1960

Experiment: MoYLS4 with Spectinomycin 0.0125mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MoYLS4 with Spectinomycin 0.0125mg/mL
2,034,944	+		DVU1959	0.68	+0.7
2,034,959	+		DVU1959	0.68	-0.5
2,034,969	+		DVU1959	0.69	-0.5
2,034,977	-		DVU1959	0.69	-0.4
2,035,000	+		DVU1959	0.70	-0.7
2,035,031	-		DVU1959	0.71	-0.9
2,035,052	+		DVU1959	0.72	-0.2
2,035,105	-		DVU1959	0.74	-1.4
2,035,115	-		DVU1959	0.75	+2.4
2,035,218	+		DVU1959	0.79	+0.0
2,035,391	-		DVU1959	0.86	-0.2
2,035,428	-		DVU1959	0.88	-1.3
2,035,473	-		DVU1959	0.90	+0.1
2,035,487	+				-0.3
2,035,650	-				-0.7
2,035,802	-				-0.1
2,035,822	+				-1.4
2,035,846	+				-0.2
2,035,881	-				-0.9
2,035,884	+				+0.0
2,035,892	-				-0.4
2,035,892	-				-0.1
2,035,933	-				+0.3
2,036,073	+				+0.5
2,036,080	+				+0.1
2,036,088	-				+0.5
2,036,304	+	cheA-2	DVU1960	0.17	+2.5
2,036,312	-	cheA-2	DVU1960	0.18	-1.3
2,036,319	+	cheA-2	DVU1960	0.18	-0.9
2,036,451	+	cheA-2	DVU1960	0.24	-0.1
2,036,509	+	cheA-2	DVU1960	0.27	+0.2
2,036,563	+	cheA-2	DVU1960	0.30	+0.0
2,036,581	-	cheA-2	DVU1960	0.31	+0.2
2,036,596	-	cheA-2	DVU1960	0.31	-0.6
2,036,606	-	cheA-2	DVU1960	0.32	+0.4
2,036,606	-	cheA-2	DVU1960	0.32	-1.3
2,036,679	+	cheA-2	DVU1960	0.35	+0.7
2,036,729	-	cheA-2	DVU1960	0.38	+0.3
2,036,753	-	cheA-2	DVU1960	0.39	-0.4
2,036,868	+	cheA-2	DVU1960	0.44	+0.2
2,036,882	+	cheA-2	DVU1960	0.45	+0.1
2,037,057	+	cheA-2	DVU1960	0.53	-0.3
2,037,095	+	cheA-2	DVU1960	0.55	+0.1
2,037,144	+	cheA-2	DVU1960	0.57	-0.7
2,037,152	-	cheA-2	DVU1960	0.58	-0.4
2,037,211	-	cheA-2	DVU1960	0.61	-0.1
2,037,317	-	cheA-2	DVU1960	0.66	+0.0
2,037,385	+	cheA-2	DVU1960	0.69	+0.3
2,037,493	-	cheA-2	DVU1960	0.74	-0.1
2,037,590	+	cheA-2	DVU1960	0.79	-0.1
2,037,603	-	cheA-2	DVU1960	0.79	-0.1
2,037,735	-	cheA-2	DVU1960	0.86	+0.2
2,037,737	-	cheA-2	DVU1960	0.86	-0.0
2,037,787	-	cheA-2	DVU1960	0.88	+0.2
2,037,787	-	cheA-2	DVU1960	0.88	+0.0
2,037,822	-	cheA-2	DVU1960	0.90	-0.0
2,037,834	+				-0.7
2,037,853	+				+1.2
2,037,923	+				-0.2
2,037,942	-				+0.0
2,038,043	+				-0.1
2,038,051	-				+0.1
2,038,264	-	cheW-3	DVU1961	0.45	+0.2
2,038,439	+	cheW-3	DVU1961	0.79	-0.2
2,038,557	-				-0.9
2,038,662	-				-0.9
2,038,682	+				-0.2
2,038,695	-				+0.1
2,038,744	+				+0.3
2,038,752	-				+0.1
2,038,820	+		DVU1962	0.12	+0.1
2,038,830	+		DVU1962	0.13	+0.3
2,038,840	+		DVU1962	0.13	+0.0
2,038,858	+		DVU1962	0.14	+0.9
2,038,858	+		DVU1962	0.14	+0.4
2,038,858	+		DVU1962	0.14	+0.1
2,038,909	-		DVU1962	0.17	+0.0
2,038,943	-		DVU1962	0.18	-0.4