Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0371

Experiment: MoYLS4 with Spectinomycin 0.0125mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0368 and DVU0369 are separated by 131 nucleotidesDVU0369 and DVU0370 are separated by 91 nucleotidesDVU0370 and DVU0371 are separated by 0 nucleotidesDVU0371 and DVU0372 are separated by 299 nucleotides DVU0368: DVU0368 - hypothetical protein (TIGR), at 417,842 to 417,946 DVU0368 DVU0369: DVU0369 - hypothetical protein (TIGR), at 418,078 to 418,176 DVU0369 DVU0370: DVU0370 - hypothetical protein (TIGR), at 418,268 to 418,411 DVU0370 DVU0371: DVU0371 - conserved hypothetical protein (TIGR), at 418,412 to 419,836 DVU0371 DVU0372: DVU0372 - membrane protein, putative (TIGR), at 420,136 to 420,828 DVU0372 Position (kb) 418 419 420Strain fitness (log2 ratio) -2 -1 0 1 2at 417.435 kb on + strandat 417.497 kb on + strandat 417.619 kb on - strandat 417.619 kb on - strandat 417.628 kb on - strandat 417.715 kb on - strandat 417.749 kb on + strandat 417.784 kb on + strandat 417.785 kb on + strandat 417.793 kb on - strandat 417.793 kb on - strandat 417.814 kb on + strandat 417.814 kb on + strandat 417.815 kb on + strandat 417.822 kb on - strandat 417.822 kb on - strandat 417.822 kb on - strandat 417.913 kb on + strand, within DVU0368at 417.921 kb on - strand, within DVU0368at 418.453 kb on - strandat 418.469 kb on + strandat 418.607 kb on + strand, within DVU0371at 418.710 kb on + strand, within DVU0371at 418.718 kb on - strand, within DVU0371at 418.728 kb on - strand, within DVU0371at 418.767 kb on + strand, within DVU0371at 418.830 kb on - strand, within DVU0371at 418.833 kb on + strand, within DVU0371at 418.841 kb on + strand, within DVU0371at 418.860 kb on + strand, within DVU0371at 418.866 kb on + strand, within DVU0371at 418.886 kb on + strand, within DVU0371at 418.891 kb on + strand, within DVU0371at 418.894 kb on - strand, within DVU0371at 418.894 kb on - strand, within DVU0371at 418.894 kb on - strand, within DVU0371at 418.904 kb on - strand, within DVU0371at 418.904 kb on - strand, within DVU0371at 418.906 kb on + strand, within DVU0371at 418.928 kb on - strand, within DVU0371at 418.948 kb on + strand, within DVU0371at 418.981 kb on - strand, within DVU0371at 419.034 kb on + strand, within DVU0371at 419.044 kb on + strand, within DVU0371at 419.067 kb on + strand, within DVU0371at 419.211 kb on - strand, within DVU0371at 419.238 kb on - strand, within DVU0371at 419.240 kb on + strand, within DVU0371at 419.353 kb on + strand, within DVU0371at 419.426 kb on + strand, within DVU0371at 419.426 kb on + strand, within DVU0371at 419.470 kb on + strand, within DVU0371at 419.485 kb on + strand, within DVU0371at 419.495 kb on + strand, within DVU0371at 419.579 kb on - strand, within DVU0371at 419.608 kb on - strand, within DVU0371at 419.651 kb on + strand, within DVU0371at 419.656 kb on - strand, within DVU0371at 419.659 kb on - strand, within DVU0371at 419.663 kb on + strand, within DVU0371at 419.671 kb on - strand, within DVU0371at 419.671 kb on - strand, within DVU0371at 419.671 kb on - strand, within DVU0371at 419.749 kb on - strandat 419.778 kb on - strandat 419.793 kb on - strandat 419.793 kb on - strandat 419.793 kb on - strandat 419.808 kb on - strandat 419.878 kb on + strandat 419.878 kb on + strandat 419.935 kb on + strandat 419.945 kb on + strandat 419.950 kb on - strandat 419.952 kb on + strandat 419.953 kb on - strandat 419.953 kb on - strandat 420.104 kb on + strandat 420.104 kb on + strandat 420.104 kb on + strandat 420.115 kb on + strandat 420.125 kb on + strandat 420.140 kb on - strandat 420.237 kb on - strand, within DVU0372at 420.280 kb on - strand, within DVU0372at 420.306 kb on + strand, within DVU0372at 420.306 kb on + strand, within DVU0372at 420.306 kb on + strand, within DVU0372at 420.306 kb on + strand, within DVU0372at 420.314 kb on - strand, within DVU0372at 420.314 kb on - strand, within DVU0372at 420.319 kb on - strand, within DVU0372at 420.397 kb on - strand, within DVU0372at 420.433 kb on + strand, within DVU0372at 420.441 kb on - strand, within DVU0372at 420.441 kb on - strand, within DVU0372at 420.441 kb on - strand, within DVU0372at 420.446 kb on - strand, within DVU0372at 420.468 kb on + strand, within DVU0372at 420.468 kb on + strand, within DVU0372at 420.483 kb on + strand, within DVU0372at 420.483 kb on + strand, within DVU0372at 420.593 kb on + strand, within DVU0372at 420.599 kb on - strand, within DVU0372at 420.601 kb on - strand, within DVU0372at 420.605 kb on + strand, within DVU0372at 420.605 kb on + strand, within DVU0372at 420.613 kb on - strand, within DVU0372at 420.644 kb on - strand, within DVU0372at 420.644 kb on - strand, within DVU0372at 420.660 kb on + strand, within DVU0372at 420.678 kb on - strand, within DVU0372at 420.706 kb on + strand, within DVU0372at 420.706 kb on + strand, within DVU0372at 420.718 kb on + strand, within DVU0372at 420.726 kb on - strand, within DVU0372

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Spectinomycin 0.0125mg/mL
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417,435 + -0.3
417,497 + +0.4
417,619 - -0.7
417,619 - -0.4
417,628 - +0.5
417,715 - -0.3
417,749 + +0.4
417,784 + +0.2
417,785 + -0.2
417,793 - +0.5
417,793 - +0.7
417,814 + +0.0
417,814 + +0.1
417,815 + +1.4
417,822 - +0.4
417,822 - +1.3
417,822 - +0.2
417,913 + DVU0368 0.68 +0.1
417,921 - DVU0368 0.75 -0.1
418,453 - +2.3
418,469 + -0.0
418,607 + DVU0371 0.14 -0.1
418,710 + DVU0371 0.21 -1.9
418,718 - DVU0371 0.21 -0.6
418,728 - DVU0371 0.22 -0.3
418,767 + DVU0371 0.25 -0.3
418,830 - DVU0371 0.29 -0.8
418,833 + DVU0371 0.30 +0.6
418,841 + DVU0371 0.30 -0.2
418,860 + DVU0371 0.31 -2.2
418,866 + DVU0371 0.32 -1.0
418,886 + DVU0371 0.33 -1.0
418,891 + DVU0371 0.34 -0.2
418,894 - DVU0371 0.34 -0.8
418,894 - DVU0371 0.34 +1.5
418,894 - DVU0371 0.34 +0.1
418,904 - DVU0371 0.35 -0.1
418,904 - DVU0371 0.35 -0.4
418,906 + DVU0371 0.35 -1.1
418,928 - DVU0371 0.36 -0.8
418,948 + DVU0371 0.38 -0.0
418,981 - DVU0371 0.40 -1.1
419,034 + DVU0371 0.44 -0.2
419,044 + DVU0371 0.44 +1.2
419,067 + DVU0371 0.46 -0.5
419,211 - DVU0371 0.56 -0.5
419,238 - DVU0371 0.58 -0.5
419,240 + DVU0371 0.58 +0.3
419,353 + DVU0371 0.66 -0.8
419,426 + DVU0371 0.71 -0.3
419,426 + DVU0371 0.71 +1.7
419,470 + DVU0371 0.74 +0.7
419,485 + DVU0371 0.75 -0.3
419,495 + DVU0371 0.76 -0.2
419,579 - DVU0371 0.82 -0.3
419,608 - DVU0371 0.84 -0.9
419,651 + DVU0371 0.87 -1.2
419,656 - DVU0371 0.87 -0.1
419,659 - DVU0371 0.88 -0.1
419,663 + DVU0371 0.88 -1.6
419,671 - DVU0371 0.88 +0.0
419,671 - DVU0371 0.88 +0.4
419,671 - DVU0371 0.88 +0.0
419,749 - -1.1
419,778 - +0.1
419,793 - +0.4
419,793 - +0.6
419,793 - +0.4
419,808 - +0.3
419,878 + -0.7
419,878 + -0.9
419,935 + -0.1
419,945 + +0.3
419,950 - -1.4
419,952 + +0.5
419,953 - +0.2
419,953 - +0.1
420,104 + -0.4
420,104 + -0.7
420,104 + -1.0
420,115 + -0.9
420,125 + -0.2
420,140 - +0.5
420,237 - DVU0372 0.15 +1.9
420,280 - DVU0372 0.21 +0.3
420,306 + DVU0372 0.25 -0.0
420,306 + DVU0372 0.25 -0.0
420,306 + DVU0372 0.25 +1.4
420,306 + DVU0372 0.25 -0.8
420,314 - DVU0372 0.26 -1.6
420,314 - DVU0372 0.26 +0.2
420,319 - DVU0372 0.26 -0.2
420,397 - DVU0372 0.38 +0.1
420,433 + DVU0372 0.43 -2.0
420,441 - DVU0372 0.44 -0.9
420,441 - DVU0372 0.44 +0.2
420,441 - DVU0372 0.44 -0.2
420,446 - DVU0372 0.45 -0.1
420,468 + DVU0372 0.48 -1.1
420,468 + DVU0372 0.48 +0.2
420,483 + DVU0372 0.50 -0.0
420,483 + DVU0372 0.50 -0.2
420,593 + DVU0372 0.66 -0.3
420,599 - DVU0372 0.67 +0.1
420,601 - DVU0372 0.67 +1.4
420,605 + DVU0372 0.68 -1.3
420,605 + DVU0372 0.68 +0.3
420,613 - DVU0372 0.69 -1.7
420,644 - DVU0372 0.73 -0.1
420,644 - DVU0372 0.73 +0.1
420,660 + DVU0372 0.76 +0.0
420,678 - DVU0372 0.78 -0.2
420,706 + DVU0372 0.82 -0.6
420,706 + DVU0372 0.82 -0.3
420,718 + DVU0372 0.84 -0.3
420,726 - DVU0372 0.85 +0.6

Or see this region's nucleotide sequence