Experiment: JK38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS27000 and ECOLIN_RS27005 are separated by 9 nucleotides ECOLIN_RS27005 and ECOLIN_RS33515 are separated by 799 nucleotides
ECOLIN_RS27000: ECOLIN_RS27000 - S-methyl-5-thioribose-1-phosphate isomerase, at 5,403,189 to 5,404,304
_RS27000
ECOLIN_RS27005: ECOLIN_RS27005 - S-methyl-5-thioribose kinase, at 5,404,314 to 5,405,573
_RS27005
ECOLIN_RS33515: ECOLIN_RS33515 - glycosyltransferase family 2 protein, at 5,406,373 to 5,406,627
_RS33515
Position (kb) 5404
5405
5406 Strain fitness (log2 ratio) -1
0
1 at 5403.532 kb on + strand, within ECOLIN_RS27000 at 5403.532 kb on + strand, within ECOLIN_RS27000 at 5403.533 kb on - strand, within ECOLIN_RS27000 at 5403.533 kb on - strand, within ECOLIN_RS27000 at 5403.533 kb on - strand, within ECOLIN_RS27000 at 5403.761 kb on - strand, within ECOLIN_RS27000 at 5403.761 kb on - strand, within ECOLIN_RS27000 at 5403.812 kb on + strand, within ECOLIN_RS27000 at 5403.813 kb on - strand, within ECOLIN_RS27000 at 5403.881 kb on + strand, within ECOLIN_RS27000 at 5403.882 kb on - strand, within ECOLIN_RS27000 at 5403.889 kb on - strand, within ECOLIN_RS27000 at 5404.022 kb on + strand, within ECOLIN_RS27000 at 5404.023 kb on - strand, within ECOLIN_RS27000 at 5404.215 kb on - strand at 5404.290 kb on - strand at 5404.298 kb on + strand at 5404.320 kb on - strand at 5404.320 kb on - strand at 5404.376 kb on + strand at 5404.431 kb on - strand at 5404.735 kb on + strand, within ECOLIN_RS27005 at 5404.736 kb on - strand, within ECOLIN_RS27005 at 5404.759 kb on + strand, within ECOLIN_RS27005 at 5404.759 kb on + strand, within ECOLIN_RS27005 at 5404.759 kb on + strand, within ECOLIN_RS27005 at 5404.760 kb on - strand, within ECOLIN_RS27005 at 5404.760 kb on - strand, within ECOLIN_RS27005 at 5404.760 kb on - strand, within ECOLIN_RS27005 at 5404.760 kb on - strand, within ECOLIN_RS27005 at 5404.760 kb on - strand, within ECOLIN_RS27005 at 5404.760 kb on - strand, within ECOLIN_RS27005 at 5404.760 kb on - strand, within ECOLIN_RS27005 at 5404.898 kb on - strand, within ECOLIN_RS27005 at 5404.901 kb on + strand, within ECOLIN_RS27005 at 5404.901 kb on + strand, within ECOLIN_RS27005 at 5404.901 kb on + strand, within ECOLIN_RS27005 at 5404.902 kb on - strand, within ECOLIN_RS27005 at 5404.902 kb on - strand, within ECOLIN_RS27005 at 5404.902 kb on - strand, within ECOLIN_RS27005 at 5404.902 kb on - strand, within ECOLIN_RS27005 at 5404.929 kb on + strand, within ECOLIN_RS27005 at 5404.929 kb on + strand, within ECOLIN_RS27005 at 5404.930 kb on - strand, within ECOLIN_RS27005 at 5404.983 kb on - strand, within ECOLIN_RS27005 at 5404.999 kb on + strand, within ECOLIN_RS27005 at 5405.000 kb on - strand, within ECOLIN_RS27005 at 5405.000 kb on - strand, within ECOLIN_RS27005 at 5405.002 kb on + strand, within ECOLIN_RS27005 at 5405.284 kb on + strand, within ECOLIN_RS27005 at 5405.302 kb on - strand, within ECOLIN_RS27005 at 5405.338 kb on - strand, within ECOLIN_RS27005 at 5405.385 kb on + strand, within ECOLIN_RS27005 at 5405.400 kb on - strand, within ECOLIN_RS27005 at 5405.400 kb on - strand, within ECOLIN_RS27005 at 5405.548 kb on + strand at 5405.935 kb on - strand at 5406.045 kb on - strand at 5406.134 kb on - strand at 5406.436 kb on - strand, within ECOLIN_RS33515 at 5406.448 kb on - strand, within ECOLIN_RS33515 at 5406.483 kb on + strand, within ECOLIN_RS33515 at 5406.504 kb on + strand, within ECOLIN_RS33515 at 5406.505 kb on - strand, within ECOLIN_RS33515
Per-strain Table
Position Strand Gene LocusTag Fraction JK38 remove 5,403,532 + ECOLIN_RS27000 0.31 -0.3 5,403,532 + ECOLIN_RS27000 0.31 -0.3 5,403,533 - ECOLIN_RS27000 0.31 +0.5 5,403,533 - ECOLIN_RS27000 0.31 +0.4 5,403,533 - ECOLIN_RS27000 0.31 +0.2 5,403,761 - ECOLIN_RS27000 0.51 -0.6 5,403,761 - ECOLIN_RS27000 0.51 +0.2 5,403,812 + ECOLIN_RS27000 0.56 -0.2 5,403,813 - ECOLIN_RS27000 0.56 -0.4 5,403,881 + ECOLIN_RS27000 0.62 -0.1 5,403,882 - ECOLIN_RS27000 0.62 -0.2 5,403,889 - ECOLIN_RS27000 0.63 +0.3 5,404,022 + ECOLIN_RS27000 0.75 +0.1 5,404,023 - ECOLIN_RS27000 0.75 +0.0 5,404,215 - -0.3 5,404,290 - -0.8 5,404,298 + -0.0 5,404,320 - +0.3 5,404,320 - +0.0 5,404,376 + +0.2 5,404,431 - -0.2 5,404,735 + ECOLIN_RS27005 0.33 +0.7 5,404,736 - ECOLIN_RS27005 0.33 +0.5 5,404,759 + ECOLIN_RS27005 0.35 +0.4 5,404,759 + ECOLIN_RS27005 0.35 -0.6 5,404,759 + ECOLIN_RS27005 0.35 +0.0 5,404,760 - ECOLIN_RS27005 0.35 +0.1 5,404,760 - ECOLIN_RS27005 0.35 +0.3 5,404,760 - ECOLIN_RS27005 0.35 +0.6 5,404,760 - ECOLIN_RS27005 0.35 +0.2 5,404,760 - ECOLIN_RS27005 0.35 -0.1 5,404,760 - ECOLIN_RS27005 0.35 -0.3 5,404,760 - ECOLIN_RS27005 0.35 +0.4 5,404,898 - ECOLIN_RS27005 0.46 -0.1 5,404,901 + ECOLIN_RS27005 0.47 +1.5 5,404,901 + ECOLIN_RS27005 0.47 +0.1 5,404,901 + ECOLIN_RS27005 0.47 +0.4 5,404,902 - ECOLIN_RS27005 0.47 +0.2 5,404,902 - ECOLIN_RS27005 0.47 +0.4 5,404,902 - ECOLIN_RS27005 0.47 +0.1 5,404,902 - ECOLIN_RS27005 0.47 +0.1 5,404,929 + ECOLIN_RS27005 0.49 +0.9 5,404,929 + ECOLIN_RS27005 0.49 -0.3 5,404,930 - ECOLIN_RS27005 0.49 -0.2 5,404,983 - ECOLIN_RS27005 0.53 +0.0 5,404,999 + ECOLIN_RS27005 0.54 -0.1 5,405,000 - ECOLIN_RS27005 0.54 +0.9 5,405,000 - ECOLIN_RS27005 0.54 +0.3 5,405,002 + ECOLIN_RS27005 0.55 -0.3 5,405,284 + ECOLIN_RS27005 0.77 +0.1 5,405,302 - ECOLIN_RS27005 0.78 +0.5 5,405,338 - ECOLIN_RS27005 0.81 +0.6 5,405,385 + ECOLIN_RS27005 0.85 +1.1 5,405,400 - ECOLIN_RS27005 0.86 -0.1 5,405,400 - ECOLIN_RS27005 0.86 +0.8 5,405,548 + -0.4 5,405,935 - -0.4 5,406,045 - -0.4 5,406,134 - -0.3 5,406,436 - ECOLIN_RS33515 0.25 +0.7 5,406,448 - ECOLIN_RS33515 0.29 -1.1 5,406,483 + ECOLIN_RS33515 0.43 +0.8 5,406,504 + ECOLIN_RS33515 0.51 -0.4 5,406,505 - ECOLIN_RS33515 0.52 -0.2
Or see this region's nucleotide sequence