Experiment: JK38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS23340 and ECOLIN_RS23345 are separated by 115 nucleotides ECOLIN_RS23345 and ECOLIN_RS23350 are separated by 41 nucleotides ECOLIN_RS23350 and ECOLIN_RS23355 are separated by 155 nucleotides
ECOLIN_RS23340: ECOLIN_RS23340 - MATE family efflux transporter DinF, at 4,697,001 to 4,698,326
_RS23340
ECOLIN_RS23345: ECOLIN_RS23345 - CsbD family protein, at 4,698,442 to 4,698,651
_RS23345
ECOLIN_RS23350: ECOLIN_RS23350 - zinc uptake transcriptional repressor Zur, at 4,698,693 to 4,699,208
_RS23350
ECOLIN_RS23355: ECOLIN_RS23355 - tRNA dihydrouridine(20/20a) synthase DusA, at 4,699,364 to 4,700,359
_RS23355
Position (kb) 4698
4699 Strain fitness (log2 ratio) -2
-1
0
1 at 4697.443 kb on + strand, within ECOLIN_RS23340 at 4697.443 kb on + strand, within ECOLIN_RS23340 at 4697.963 kb on - strand, within ECOLIN_RS23340 at 4698.057 kb on + strand, within ECOLIN_RS23340 at 4698.063 kb on - strand, within ECOLIN_RS23340 at 4698.063 kb on - strand, within ECOLIN_RS23340 at 4698.122 kb on + strand, within ECOLIN_RS23340 at 4698.122 kb on + strand, within ECOLIN_RS23340 at 4698.122 kb on + strand, within ECOLIN_RS23340 at 4698.256 kb on + strand at 4698.423 kb on + strand at 4698.618 kb on + strand, within ECOLIN_RS23345 at 4698.618 kb on + strand, within ECOLIN_RS23345 at 4698.618 kb on + strand, within ECOLIN_RS23345 at 4698.674 kb on + strand at 4698.762 kb on + strand, within ECOLIN_RS23350 at 4698.762 kb on + strand, within ECOLIN_RS23350 at 4698.763 kb on - strand, within ECOLIN_RS23350 at 4698.763 kb on - strand, within ECOLIN_RS23350 at 4698.763 kb on - strand, within ECOLIN_RS23350 at 4698.763 kb on - strand, within ECOLIN_RS23350 at 4698.769 kb on - strand, within ECOLIN_RS23350 at 4698.784 kb on - strand, within ECOLIN_RS23350 at 4698.807 kb on - strand, within ECOLIN_RS23350 at 4698.842 kb on + strand, within ECOLIN_RS23350 at 4698.843 kb on - strand, within ECOLIN_RS23350 at 4698.906 kb on - strand, within ECOLIN_RS23350 at 4698.920 kb on + strand, within ECOLIN_RS23350 at 4698.921 kb on - strand, within ECOLIN_RS23350 at 4698.955 kb on + strand, within ECOLIN_RS23350 at 4698.956 kb on - strand, within ECOLIN_RS23350 at 4699.075 kb on + strand, within ECOLIN_RS23350 at 4699.243 kb on - strand at 4699.243 kb on - strand at 4699.247 kb on + strand at 4699.252 kb on + strand at 4699.253 kb on - strand at 4699.253 kb on - strand at 4699.322 kb on + strand at 4699.323 kb on - strand at 4699.323 kb on - strand at 4699.323 kb on - strand at 4699.323 kb on - strand at 4699.324 kb on + strand at 4699.325 kb on - strand at 4699.325 kb on - strand at 4699.325 kb on - strand at 4699.325 kb on - strand at 4699.475 kb on - strand, within ECOLIN_RS23355 at 4699.484 kb on + strand, within ECOLIN_RS23355 at 4699.484 kb on + strand, within ECOLIN_RS23355 at 4699.541 kb on + strand, within ECOLIN_RS23355 at 4699.635 kb on - strand, within ECOLIN_RS23355
Per-strain Table
Position Strand Gene LocusTag Fraction JK38 remove 4,697,443 + ECOLIN_RS23340 0.33 +0.2 4,697,443 + ECOLIN_RS23340 0.33 -0.4 4,697,963 - ECOLIN_RS23340 0.73 -0.8 4,698,057 + ECOLIN_RS23340 0.80 -0.1 4,698,063 - ECOLIN_RS23340 0.80 +0.3 4,698,063 - ECOLIN_RS23340 0.80 -0.1 4,698,122 + ECOLIN_RS23340 0.85 -0.3 4,698,122 + ECOLIN_RS23340 0.85 -0.2 4,698,122 + ECOLIN_RS23340 0.85 +0.3 4,698,256 + +0.7 4,698,423 + -0.2 4,698,618 + ECOLIN_RS23345 0.84 -0.2 4,698,618 + ECOLIN_RS23345 0.84 +0.3 4,698,618 + ECOLIN_RS23345 0.84 +0.0 4,698,674 + +0.2 4,698,762 + ECOLIN_RS23350 0.13 -0.1 4,698,762 + ECOLIN_RS23350 0.13 +0.4 4,698,763 - ECOLIN_RS23350 0.14 -0.7 4,698,763 - ECOLIN_RS23350 0.14 +0.1 4,698,763 - ECOLIN_RS23350 0.14 +0.5 4,698,763 - ECOLIN_RS23350 0.14 +0.1 4,698,769 - ECOLIN_RS23350 0.15 +0.6 4,698,784 - ECOLIN_RS23350 0.18 -0.3 4,698,807 - ECOLIN_RS23350 0.22 +0.1 4,698,842 + ECOLIN_RS23350 0.29 -0.2 4,698,843 - ECOLIN_RS23350 0.29 +1.2 4,698,906 - ECOLIN_RS23350 0.41 +0.1 4,698,920 + ECOLIN_RS23350 0.44 -0.1 4,698,921 - ECOLIN_RS23350 0.44 +0.3 4,698,955 + ECOLIN_RS23350 0.51 +1.1 4,698,956 - ECOLIN_RS23350 0.51 -0.2 4,699,075 + ECOLIN_RS23350 0.74 +0.3 4,699,243 - -0.1 4,699,243 - +1.1 4,699,247 + +0.4 4,699,252 + -0.3 4,699,253 - -0.0 4,699,253 - +0.2 4,699,322 + +0.8 4,699,323 - -0.2 4,699,323 - +0.0 4,699,323 - -2.3 4,699,323 - +0.5 4,699,324 + -0.8 4,699,325 - -0.0 4,699,325 - +0.4 4,699,325 - +0.4 4,699,325 - -0.1 4,699,475 - ECOLIN_RS23355 0.11 -0.1 4,699,484 + ECOLIN_RS23355 0.12 +0.1 4,699,484 + ECOLIN_RS23355 0.12 -0.4 4,699,541 + ECOLIN_RS23355 0.18 +0.1 4,699,635 - ECOLIN_RS23355 0.27 +0.0
Or see this region's nucleotide sequence