Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS03755

Experiment: JK38

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS31270 and ECOLIN_RS33355 overlap by 22 nucleotidesECOLIN_RS33355 and ECOLIN_RS03750 are separated by 161 nucleotidesECOLIN_RS03750 and ECOLIN_RS03755 overlap by 4 nucleotidesECOLIN_RS03755 and ECOLIN_RS03760 overlap by 8 nucleotidesECOLIN_RS03760 and ECOLIN_RS03765 are separated by 8 nucleotides ECOLIN_RS31270: ECOLIN_RS31270 - leader peptide SpeFL, at 766,520 to 766,624 _RS31270 ECOLIN_RS33355: ECOLIN_RS33355 - hypothetical protein, at 766,603 to 766,737 _RS33355 ECOLIN_RS03750: ECOLIN_RS03750 - two-component system response regulator KdpE, at 766,899 to 767,576 _RS03750 ECOLIN_RS03755: ECOLIN_RS03755 - two-component system sensor histidine kinase KdpD, at 767,573 to 770,257 _RS03755 ECOLIN_RS03760: ECOLIN_RS03760 - K(+)-transporting ATPase subunit C, at 770,250 to 770,822 _RS03760 ECOLIN_RS03765: ECOLIN_RS03765 - potassium-transporting ATPase subunit KdpB, at 770,831 to 772,879 _RS03765 Position (kb) 767 768 769 770 771Strain fitness (log2 ratio) -1 0 1at 767.949 kb on - strand, within ECOLIN_RS03755at 768.100 kb on + strand, within ECOLIN_RS03755

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Per-strain Table

Position Strand Gene LocusTag Fraction JK38
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767,949 - ECOLIN_RS03755 0.14 -0.2
768,100 + ECOLIN_RS03755 0.20 -0.7

Or see this region's nucleotide sequence