Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS17020 and HMPREF1078_RS17025 are separated by 22 nucleotides HMPREF1078_RS17025 and HMPREF1078_RS20105 are separated by 15 nucleotides HMPREF1078_RS20105 and HMPREF1078_RS17040 are separated by 881 nucleotides
HMPREF1078_RS17020: HMPREF1078_RS17020 - peptidylprolyl isomerase, at 111,424 to 112,788
_RS17020
HMPREF1078_RS17025: HMPREF1078_RS17025 - hypothetical protein, at 112,811 to 113,668
_RS17025
HMPREF1078_RS20105: HMPREF1078_RS20105 - peptidylprolyl isomerase, at 113,684 to 115,264
_RS20105
HMPREF1078_RS17040: HMPREF1078_RS17040 - DNA helicase RecQ, at 116,146 to 118,326
_RS17040
Position (kb) 113
114
115
116 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 112.791 kb on - strand at 112.791 kb on - strand at 112.799 kb on - strand at 112.801 kb on - strand at 112.806 kb on - strand at 112.806 kb on - strand at 112.825 kb on - strand at 112.825 kb on - strand at 112.859 kb on - strand at 112.859 kb on - strand at 112.859 kb on - strand at 112.863 kb on - strand at 112.939 kb on - strand, within HMPREF1078_RS17025 at 112.979 kb on - strand, within HMPREF1078_RS17025 at 112.999 kb on - strand, within HMPREF1078_RS17025 at 113.072 kb on - strand, within HMPREF1078_RS17025 at 113.072 kb on - strand, within HMPREF1078_RS17025 at 113.126 kb on - strand, within HMPREF1078_RS17025 at 113.139 kb on - strand, within HMPREF1078_RS17025 at 113.144 kb on - strand, within HMPREF1078_RS17025 at 113.146 kb on - strand, within HMPREF1078_RS17025 at 113.146 kb on - strand, within HMPREF1078_RS17025 at 113.146 kb on - strand, within HMPREF1078_RS17025 at 113.146 kb on - strand, within HMPREF1078_RS17025 at 113.146 kb on - strand, within HMPREF1078_RS17025 at 113.146 kb on - strand, within HMPREF1078_RS17025 at 113.186 kb on - strand, within HMPREF1078_RS17025 at 113.186 kb on - strand, within HMPREF1078_RS17025 at 113.187 kb on + strand, within HMPREF1078_RS17025 at 113.188 kb on - strand, within HMPREF1078_RS17025 at 113.188 kb on - strand, within HMPREF1078_RS17025 at 113.188 kb on - strand, within HMPREF1078_RS17025 at 113.293 kb on - strand, within HMPREF1078_RS17025 at 113.295 kb on + strand, within HMPREF1078_RS17025 at 113.295 kb on + strand, within HMPREF1078_RS17025 at 113.296 kb on - strand, within HMPREF1078_RS17025 at 113.385 kb on + strand, within HMPREF1078_RS17025 at 113.386 kb on - strand, within HMPREF1078_RS17025 at 113.386 kb on - strand, within HMPREF1078_RS17025 at 113.452 kb on - strand, within HMPREF1078_RS17025 at 113.503 kb on + strand, within HMPREF1078_RS17025 at 113.504 kb on - strand, within HMPREF1078_RS17025 at 113.504 kb on - strand, within HMPREF1078_RS17025 at 113.504 kb on - strand, within HMPREF1078_RS17025 at 113.504 kb on - strand, within HMPREF1078_RS17025 at 113.579 kb on + strand, within HMPREF1078_RS17025 at 113.580 kb on - strand, within HMPREF1078_RS17025 at 113.580 kb on - strand, within HMPREF1078_RS17025 at 113.617 kb on + strand at 113.618 kb on - strand at 113.646 kb on - strand at 113.661 kb on + strand at 113.671 kb on - strand at 113.683 kb on - strand at 113.685 kb on + strand at 113.686 kb on - strand at 113.743 kb on - strand at 113.890 kb on + strand, within HMPREF1078_RS20105 at 113.902 kb on + strand, within HMPREF1078_RS20105 at 113.902 kb on + strand, within HMPREF1078_RS20105 at 113.915 kb on - strand, within HMPREF1078_RS20105 at 113.915 kb on - strand, within HMPREF1078_RS20105 at 113.918 kb on + strand, within HMPREF1078_RS20105 at 113.918 kb on + strand, within HMPREF1078_RS20105 at 113.919 kb on - strand, within HMPREF1078_RS20105 at 113.919 kb on - strand, within HMPREF1078_RS20105 at 113.919 kb on - strand, within HMPREF1078_RS20105 at 113.944 kb on - strand, within HMPREF1078_RS20105 at 113.980 kb on + strand, within HMPREF1078_RS20105 at 114.002 kb on - strand, within HMPREF1078_RS20105 at 114.003 kb on + strand, within HMPREF1078_RS20105 at 114.003 kb on + strand, within HMPREF1078_RS20105 at 114.004 kb on - strand, within HMPREF1078_RS20105 at 114.004 kb on - strand, within HMPREF1078_RS20105 at 114.082 kb on - strand, within HMPREF1078_RS20105 at 114.105 kb on + strand, within HMPREF1078_RS20105 at 114.125 kb on + strand, within HMPREF1078_RS20105 at 114.125 kb on + strand, within HMPREF1078_RS20105 at 114.196 kb on - strand, within HMPREF1078_RS20105 at 114.251 kb on - strand, within HMPREF1078_RS20105 at 114.251 kb on - strand, within HMPREF1078_RS20105 at 114.290 kb on + strand, within HMPREF1078_RS20105 at 114.291 kb on - strand, within HMPREF1078_RS20105 at 114.291 kb on - strand, within HMPREF1078_RS20105 at 114.292 kb on + strand, within HMPREF1078_RS20105 at 114.293 kb on - strand, within HMPREF1078_RS20105 at 114.293 kb on - strand, within HMPREF1078_RS20105 at 114.444 kb on + strand, within HMPREF1078_RS20105 at 114.572 kb on + strand, within HMPREF1078_RS20105 at 114.578 kb on + strand, within HMPREF1078_RS20105 at 114.579 kb on - strand, within HMPREF1078_RS20105 at 114.579 kb on - strand, within HMPREF1078_RS20105 at 114.608 kb on + strand, within HMPREF1078_RS20105 at 114.619 kb on + strand, within HMPREF1078_RS20105 at 114.619 kb on + strand, within HMPREF1078_RS20105 at 114.619 kb on + strand, within HMPREF1078_RS20105 at 114.619 kb on + strand, within HMPREF1078_RS20105 at 114.620 kb on - strand, within HMPREF1078_RS20105 at 114.631 kb on + strand, within HMPREF1078_RS20105 at 114.631 kb on + strand, within HMPREF1078_RS20105 at 114.725 kb on + strand, within HMPREF1078_RS20105 at 114.726 kb on - strand, within HMPREF1078_RS20105 at 114.726 kb on - strand, within HMPREF1078_RS20105 at 114.726 kb on - strand, within HMPREF1078_RS20105 at 114.726 kb on - strand, within HMPREF1078_RS20105 at 114.729 kb on + strand, within HMPREF1078_RS20105 at 114.729 kb on + strand, within HMPREF1078_RS20105 at 114.729 kb on + strand, within HMPREF1078_RS20105 at 114.729 kb on + strand, within HMPREF1078_RS20105 at 114.730 kb on - strand, within HMPREF1078_RS20105 at 114.730 kb on - strand, within HMPREF1078_RS20105 at 114.730 kb on - strand, within HMPREF1078_RS20105 at 114.730 kb on - strand, within HMPREF1078_RS20105 at 114.805 kb on + strand, within HMPREF1078_RS20105 at 114.806 kb on - strand, within HMPREF1078_RS20105 at 114.806 kb on - strand, within HMPREF1078_RS20105 at 114.806 kb on - strand, within HMPREF1078_RS20105 at 114.806 kb on - strand, within HMPREF1078_RS20105 at 114.806 kb on - strand, within HMPREF1078_RS20105 at 114.813 kb on + strand, within HMPREF1078_RS20105 at 114.814 kb on - strand, within HMPREF1078_RS20105 at 114.835 kb on - strand, within HMPREF1078_RS20105 at 114.848 kb on - strand, within HMPREF1078_RS20105 at 114.858 kb on - strand, within HMPREF1078_RS20105 at 114.862 kb on + strand, within HMPREF1078_RS20105 at 114.862 kb on + strand, within HMPREF1078_RS20105 at 114.862 kb on + strand, within HMPREF1078_RS20105 at 114.862 kb on + strand, within HMPREF1078_RS20105 at 114.862 kb on + strand, within HMPREF1078_RS20105 at 114.862 kb on + strand, within HMPREF1078_RS20105 at 114.863 kb on - strand, within HMPREF1078_RS20105 at 114.863 kb on - strand, within HMPREF1078_RS20105 at 114.863 kb on - strand, within HMPREF1078_RS20105 at 114.886 kb on + strand, within HMPREF1078_RS20105 at 114.887 kb on - strand, within HMPREF1078_RS20105 at 114.887 kb on - strand, within HMPREF1078_RS20105 at 114.923 kb on + strand, within HMPREF1078_RS20105 at 114.923 kb on + strand, within HMPREF1078_RS20105 at 114.923 kb on + strand, within HMPREF1078_RS20105 at 114.924 kb on - strand, within HMPREF1078_RS20105 at 114.924 kb on - strand, within HMPREF1078_RS20105 at 114.932 kb on + strand, within HMPREF1078_RS20105 at 114.933 kb on - strand, within HMPREF1078_RS20105 at 114.933 kb on - strand, within HMPREF1078_RS20105 at 114.933 kb on - strand, within HMPREF1078_RS20105 at 114.933 kb on - strand, within HMPREF1078_RS20105 at 114.990 kb on + strand, within HMPREF1078_RS20105 at 114.991 kb on - strand, within HMPREF1078_RS20105 at 115.087 kb on - strand, within HMPREF1078_RS20105 at 115.087 kb on - strand, within HMPREF1078_RS20105 at 115.103 kb on - strand, within HMPREF1078_RS20105 at 115.117 kb on + strand at 115.118 kb on - strand at 115.141 kb on + strand at 115.147 kb on + strand at 115.247 kb on + strand at 115.248 kb on - strand at 115.248 kb on - strand at 115.248 kb on - strand at 115.251 kb on - strand at 115.265 kb on + strand at 115.265 kb on + strand at 115.268 kb on + strand at 115.277 kb on + strand at 115.278 kb on - strand at 115.298 kb on - strand at 115.345 kb on - strand at 115.425 kb on + strand at 115.484 kb on - strand at 115.786 kb on - strand at 115.821 kb on + strand at 115.839 kb on - strand at 115.862 kb on - strand at 115.862 kb on - strand at 115.865 kb on - strand at 115.982 kb on + strand at 115.982 kb on + strand at 115.982 kb on + strand at 115.982 kb on + strand at 115.982 kb on + strand at 115.982 kb on + strand at 115.983 kb on - strand at 115.983 kb on - strand at 115.983 kb on - strand at 115.983 kb on - strand at 116.026 kb on + strand at 116.036 kb on - strand at 116.036 kb on - strand at 116.042 kb on + strand at 116.042 kb on + strand at 116.042 kb on + strand at 116.050 kb on - strand at 116.090 kb on - strand at 116.090 kb on - strand at 116.144 kb on - strand at 116.147 kb on + strand at 116.147 kb on + strand at 116.148 kb on - strand at 116.203 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 remove 112,791 - -2.1 112,791 - -4.2 112,799 - +0.3 112,801 - +2.2 112,806 - -2.5 112,806 - -0.2 112,825 - -0.9 112,825 - +1.6 112,859 - -2.1 112,859 - -0.6 112,859 - -2.1 112,863 - -1.5 112,939 - HMPREF1078_RS17025 0.15 -1.5 112,979 - HMPREF1078_RS17025 0.20 +0.4 112,999 - HMPREF1078_RS17025 0.22 -0.9 113,072 - HMPREF1078_RS17025 0.30 +2.9 113,072 - HMPREF1078_RS17025 0.30 -1.0 113,126 - HMPREF1078_RS17025 0.37 +1.1 113,139 - HMPREF1078_RS17025 0.38 +0.9 113,144 - HMPREF1078_RS17025 0.39 +0.8 113,146 - HMPREF1078_RS17025 0.39 -0.0 113,146 - HMPREF1078_RS17025 0.39 +0.4 113,146 - HMPREF1078_RS17025 0.39 +0.4 113,146 - HMPREF1078_RS17025 0.39 +2.2 113,146 - HMPREF1078_RS17025 0.39 +0.4 113,146 - HMPREF1078_RS17025 0.39 -2.5 113,186 - HMPREF1078_RS17025 0.44 +0.6 113,186 - HMPREF1078_RS17025 0.44 -3.1 113,187 + HMPREF1078_RS17025 0.44 -0.3 113,188 - HMPREF1078_RS17025 0.44 +1.3 113,188 - HMPREF1078_RS17025 0.44 -0.9 113,188 - HMPREF1078_RS17025 0.44 +1.4 113,293 - HMPREF1078_RS17025 0.56 +2.5 113,295 + HMPREF1078_RS17025 0.56 -0.0 113,295 + HMPREF1078_RS17025 0.56 -0.5 113,296 - HMPREF1078_RS17025 0.57 -1.5 113,385 + HMPREF1078_RS17025 0.67 -0.0 113,386 - HMPREF1078_RS17025 0.67 -3.2 113,386 - HMPREF1078_RS17025 0.67 -1.7 113,452 - HMPREF1078_RS17025 0.75 -1.1 113,503 + HMPREF1078_RS17025 0.81 +0.3 113,504 - HMPREF1078_RS17025 0.81 +2.0 113,504 - HMPREF1078_RS17025 0.81 -0.5 113,504 - HMPREF1078_RS17025 0.81 -0.3 113,504 - HMPREF1078_RS17025 0.81 +0.6 113,579 + HMPREF1078_RS17025 0.90 +0.7 113,580 - HMPREF1078_RS17025 0.90 +0.5 113,580 - HMPREF1078_RS17025 0.90 +1.2 113,617 + -0.7 113,618 - -0.7 113,646 - +3.4 113,661 + -0.0 113,671 - +0.5 113,683 - -1.7 113,685 + -0.0 113,686 - -0.2 113,743 - -0.3 113,890 + HMPREF1078_RS20105 0.13 -0.9 113,902 + HMPREF1078_RS20105 0.14 -1.6 113,902 + HMPREF1078_RS20105 0.14 -1.5 113,915 - HMPREF1078_RS20105 0.15 -4.1 113,915 - HMPREF1078_RS20105 0.15 -4.3 113,918 + HMPREF1078_RS20105 0.15 -1.6 113,918 + HMPREF1078_RS20105 0.15 -3.3 113,919 - HMPREF1078_RS20105 0.15 -3.1 113,919 - HMPREF1078_RS20105 0.15 -2.3 113,919 - HMPREF1078_RS20105 0.15 -2.8 113,944 - HMPREF1078_RS20105 0.16 -1.6 113,980 + HMPREF1078_RS20105 0.19 -2.5 114,002 - HMPREF1078_RS20105 0.20 -3.1 114,003 + HMPREF1078_RS20105 0.20 -2.6 114,003 + HMPREF1078_RS20105 0.20 -2.9 114,004 - HMPREF1078_RS20105 0.20 -2.7 114,004 - HMPREF1078_RS20105 0.20 -3.3 114,082 - HMPREF1078_RS20105 0.25 -0.9 114,105 + HMPREF1078_RS20105 0.27 -1.4 114,125 + HMPREF1078_RS20105 0.28 -3.3 114,125 + HMPREF1078_RS20105 0.28 -1.1 114,196 - HMPREF1078_RS20105 0.32 -2.0 114,251 - HMPREF1078_RS20105 0.36 -3.8 114,251 - HMPREF1078_RS20105 0.36 -4.2 114,290 + HMPREF1078_RS20105 0.38 -2.4 114,291 - HMPREF1078_RS20105 0.38 -3.1 114,291 - HMPREF1078_RS20105 0.38 -2.5 114,292 + HMPREF1078_RS20105 0.38 -3.1 114,293 - HMPREF1078_RS20105 0.39 -3.8 114,293 - HMPREF1078_RS20105 0.39 -0.6 114,444 + HMPREF1078_RS20105 0.48 -1.0 114,572 + HMPREF1078_RS20105 0.56 -1.3 114,578 + HMPREF1078_RS20105 0.57 -0.0 114,579 - HMPREF1078_RS20105 0.57 -1.8 114,579 - HMPREF1078_RS20105 0.57 -2.8 114,608 + HMPREF1078_RS20105 0.58 -2.6 114,619 + HMPREF1078_RS20105 0.59 -1.3 114,619 + HMPREF1078_RS20105 0.59 -1.0 114,619 + HMPREF1078_RS20105 0.59 -2.8 114,619 + HMPREF1078_RS20105 0.59 +0.5 114,620 - HMPREF1078_RS20105 0.59 -3.3 114,631 + HMPREF1078_RS20105 0.60 -0.5 114,631 + HMPREF1078_RS20105 0.60 -0.9 114,725 + HMPREF1078_RS20105 0.66 -1.6 114,726 - HMPREF1078_RS20105 0.66 -0.7 114,726 - HMPREF1078_RS20105 0.66 -2.5 114,726 - HMPREF1078_RS20105 0.66 -2.6 114,726 - HMPREF1078_RS20105 0.66 -2.0 114,729 + HMPREF1078_RS20105 0.66 -2.2 114,729 + HMPREF1078_RS20105 0.66 -3.7 114,729 + HMPREF1078_RS20105 0.66 -1.0 114,729 + HMPREF1078_RS20105 0.66 -2.5 114,730 - HMPREF1078_RS20105 0.66 -1.5 114,730 - HMPREF1078_RS20105 0.66 -0.9 114,730 - HMPREF1078_RS20105 0.66 -2.6 114,730 - HMPREF1078_RS20105 0.66 -2.8 114,805 + HMPREF1078_RS20105 0.71 -0.3 114,806 - HMPREF1078_RS20105 0.71 -3.6 114,806 - HMPREF1078_RS20105 0.71 -2.9 114,806 - HMPREF1078_RS20105 0.71 -3.7 114,806 - HMPREF1078_RS20105 0.71 -4.0 114,806 - HMPREF1078_RS20105 0.71 -3.0 114,813 + HMPREF1078_RS20105 0.71 -4.5 114,814 - HMPREF1078_RS20105 0.71 -1.5 114,835 - HMPREF1078_RS20105 0.73 -1.5 114,848 - HMPREF1078_RS20105 0.74 -1.4 114,858 - HMPREF1078_RS20105 0.74 +0.4 114,862 + HMPREF1078_RS20105 0.75 -1.0 114,862 + HMPREF1078_RS20105 0.75 -2.2 114,862 + HMPREF1078_RS20105 0.75 -3.9 114,862 + HMPREF1078_RS20105 0.75 -1.3 114,862 + HMPREF1078_RS20105 0.75 -3.2 114,862 + HMPREF1078_RS20105 0.75 -2.1 114,863 - HMPREF1078_RS20105 0.75 -3.4 114,863 - HMPREF1078_RS20105 0.75 -1.1 114,863 - HMPREF1078_RS20105 0.75 -2.9 114,886 + HMPREF1078_RS20105 0.76 -3.0 114,887 - HMPREF1078_RS20105 0.76 -1.7 114,887 - HMPREF1078_RS20105 0.76 -2.0 114,923 + HMPREF1078_RS20105 0.78 -2.2 114,923 + HMPREF1078_RS20105 0.78 -1.0 114,923 + HMPREF1078_RS20105 0.78 -2.2 114,924 - HMPREF1078_RS20105 0.78 -2.2 114,924 - HMPREF1078_RS20105 0.78 -0.3 114,932 + HMPREF1078_RS20105 0.79 -2.0 114,933 - HMPREF1078_RS20105 0.79 -0.8 114,933 - HMPREF1078_RS20105 0.79 -1.8 114,933 - HMPREF1078_RS20105 0.79 -4.3 114,933 - HMPREF1078_RS20105 0.79 -3.6 114,990 + HMPREF1078_RS20105 0.83 -3.1 114,991 - HMPREF1078_RS20105 0.83 -4.2 115,087 - HMPREF1078_RS20105 0.89 -2.2 115,087 - HMPREF1078_RS20105 0.89 -2.1 115,103 - HMPREF1078_RS20105 0.90 -4.1 115,117 + -3.8 115,118 - -3.0 115,141 + -3.0 115,147 + -0.9 115,247 + -2.8 115,248 - -1.7 115,248 - -3.6 115,248 - -1.9 115,251 - -3.1 115,265 + -3.2 115,265 + -0.4 115,268 + +0.3 115,277 + -2.8 115,278 - +1.1 115,298 - -1.7 115,345 - +0.1 115,425 + -2.8 115,484 - +0.6 115,786 - -0.0 115,821 + -3.8 115,839 - -0.9 115,862 - +0.4 115,862 - +1.0 115,865 - +1.3 115,982 + +1.7 115,982 + +0.3 115,982 + -0.1 115,982 + -1.6 115,982 + -1.3 115,982 + -0.9 115,983 - -1.5 115,983 - +0.9 115,983 - +3.4 115,983 - +0.2 116,026 + +1.4 116,036 - +1.5 116,036 - -1.0 116,042 + +1.1 116,042 + +1.0 116,042 + -0.3 116,050 - -1.0 116,090 - +2.7 116,090 - -0.3 116,144 - +0.1 116,147 + +0.3 116,147 + +1.0 116,148 - +0.6 116,203 - -0.0
Or see this region's nucleotide sequence