Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS19145 and HMPREF1078_RS19150 are separated by 18 nucleotides HMPREF1078_RS19150 and HMPREF1078_RS07120 are separated by 35 nucleotides
HMPREF1078_RS19145: HMPREF1078_RS19145 - MFS transporter, at 840,792 to 841,991
_RS19145
HMPREF1078_RS19150: HMPREF1078_RS19150 - 4-phosphoerythronate dehydrogenase PdxB, at 842,010 to 843,122
_RS19150
HMPREF1078_RS07120: HMPREF1078_RS07120 - hypothetical protein, at 843,158 to 844,012
_RS07120
Position (kb) 842
843
844 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 841.081 kb on + strand, within HMPREF1078_RS19145 at 841.081 kb on + strand, within HMPREF1078_RS19145 at 841.081 kb on + strand, within HMPREF1078_RS19145 at 841.082 kb on - strand, within HMPREF1078_RS19145 at 841.082 kb on - strand, within HMPREF1078_RS19145 at 841.082 kb on - strand, within HMPREF1078_RS19145 at 841.084 kb on - strand, within HMPREF1078_RS19145 at 841.163 kb on - strand, within HMPREF1078_RS19145 at 841.163 kb on - strand, within HMPREF1078_RS19145 at 841.163 kb on - strand, within HMPREF1078_RS19145 at 841.262 kb on - strand, within HMPREF1078_RS19145 at 841.301 kb on - strand, within HMPREF1078_RS19145 at 841.301 kb on - strand, within HMPREF1078_RS19145 at 841.312 kb on + strand, within HMPREF1078_RS19145 at 841.312 kb on + strand, within HMPREF1078_RS19145 at 841.312 kb on + strand, within HMPREF1078_RS19145 at 841.312 kb on + strand, within HMPREF1078_RS19145 at 841.313 kb on - strand, within HMPREF1078_RS19145 at 841.313 kb on - strand, within HMPREF1078_RS19145 at 841.313 kb on - strand, within HMPREF1078_RS19145 at 841.448 kb on - strand, within HMPREF1078_RS19145 at 841.448 kb on - strand, within HMPREF1078_RS19145 at 841.504 kb on + strand, within HMPREF1078_RS19145 at 841.690 kb on + strand, within HMPREF1078_RS19145 at 841.716 kb on - strand, within HMPREF1078_RS19145 at 841.717 kb on + strand, within HMPREF1078_RS19145 at 841.747 kb on + strand, within HMPREF1078_RS19145 at 841.811 kb on + strand, within HMPREF1078_RS19145 at 841.826 kb on + strand, within HMPREF1078_RS19145 at 841.827 kb on - strand, within HMPREF1078_RS19145 at 841.829 kb on + strand, within HMPREF1078_RS19145 at 841.831 kb on + strand, within HMPREF1078_RS19145 at 841.832 kb on - strand, within HMPREF1078_RS19145 at 841.832 kb on - strand, within HMPREF1078_RS19145 at 841.915 kb on + strand at 841.947 kb on + strand at 841.953 kb on - strand at 841.971 kb on + strand at 841.973 kb on + strand at 841.973 kb on + strand at 841.973 kb on + strand at 841.973 kb on + strand at 842.080 kb on + strand at 842.089 kb on + strand at 842.161 kb on - strand, within HMPREF1078_RS19150 at 842.318 kb on + strand, within HMPREF1078_RS19150 at 842.319 kb on - strand, within HMPREF1078_RS19150 at 842.319 kb on - strand, within HMPREF1078_RS19150 at 842.830 kb on + strand, within HMPREF1078_RS19150 at 842.879 kb on + strand, within HMPREF1078_RS19150 at 842.888 kb on + strand, within HMPREF1078_RS19150 at 842.888 kb on + strand, within HMPREF1078_RS19150 at 842.909 kb on + strand, within HMPREF1078_RS19150 at 842.982 kb on - strand, within HMPREF1078_RS19150 at 842.988 kb on - strand, within HMPREF1078_RS19150 at 842.988 kb on - strand, within HMPREF1078_RS19150 at 843.003 kb on + strand, within HMPREF1078_RS19150 at 843.058 kb on - strand at 843.197 kb on + strand at 843.197 kb on + strand at 843.198 kb on - strand at 843.414 kb on + strand, within HMPREF1078_RS07120 at 843.434 kb on + strand, within HMPREF1078_RS07120 at 843.435 kb on - strand, within HMPREF1078_RS07120 at 843.525 kb on - strand, within HMPREF1078_RS07120 at 843.601 kb on + strand, within HMPREF1078_RS07120 at 843.601 kb on + strand, within HMPREF1078_RS07120 at 843.602 kb on - strand, within HMPREF1078_RS07120 at 843.603 kb on + strand, within HMPREF1078_RS07120 at 843.628 kb on - strand, within HMPREF1078_RS07120 at 843.726 kb on + strand, within HMPREF1078_RS07120 at 843.757 kb on - strand, within HMPREF1078_RS07120 at 843.852 kb on + strand, within HMPREF1078_RS07120 at 843.867 kb on + strand, within HMPREF1078_RS07120 at 843.903 kb on + strand, within HMPREF1078_RS07120 at 843.920 kb on - strand, within HMPREF1078_RS07120 at 843.921 kb on + strand, within HMPREF1078_RS07120 at 843.961 kb on - strand at 843.995 kb on + strand at 844.013 kb on - strand at 844.018 kb on + strand at 844.019 kb on - strand at 844.019 kb on - strand at 844.029 kb on + strand at 844.030 kb on - strand at 844.070 kb on - strand at 844.070 kb on - strand at 844.070 kb on - strand at 844.070 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 remove 841,081 + HMPREF1078_RS19145 0.24 +0.9 841,081 + HMPREF1078_RS19145 0.24 +0.1 841,081 + HMPREF1078_RS19145 0.24 -2.6 841,082 - HMPREF1078_RS19145 0.24 -1.8 841,082 - HMPREF1078_RS19145 0.24 +0.3 841,082 - HMPREF1078_RS19145 0.24 +1.3 841,084 - HMPREF1078_RS19145 0.24 -0.9 841,163 - HMPREF1078_RS19145 0.31 -3.5 841,163 - HMPREF1078_RS19145 0.31 -0.8 841,163 - HMPREF1078_RS19145 0.31 -2.9 841,262 - HMPREF1078_RS19145 0.39 +1.0 841,301 - HMPREF1078_RS19145 0.42 -0.8 841,301 - HMPREF1078_RS19145 0.42 -2.2 841,312 + HMPREF1078_RS19145 0.43 +0.3 841,312 + HMPREF1078_RS19145 0.43 +0.6 841,312 + HMPREF1078_RS19145 0.43 -0.3 841,312 + HMPREF1078_RS19145 0.43 -3.2 841,313 - HMPREF1078_RS19145 0.43 +1.0 841,313 - HMPREF1078_RS19145 0.43 -2.2 841,313 - HMPREF1078_RS19145 0.43 -2.2 841,448 - HMPREF1078_RS19145 0.55 +0.1 841,448 - HMPREF1078_RS19145 0.55 +0.7 841,504 + HMPREF1078_RS19145 0.59 -2.1 841,690 + HMPREF1078_RS19145 0.75 +1.5 841,716 - HMPREF1078_RS19145 0.77 -0.4 841,717 + HMPREF1078_RS19145 0.77 -0.4 841,747 + HMPREF1078_RS19145 0.80 +0.1 841,811 + HMPREF1078_RS19145 0.85 +1.0 841,826 + HMPREF1078_RS19145 0.86 +2.4 841,827 - HMPREF1078_RS19145 0.86 +0.4 841,829 + HMPREF1078_RS19145 0.86 +0.1 841,831 + HMPREF1078_RS19145 0.87 -0.4 841,832 - HMPREF1078_RS19145 0.87 -1.4 841,832 - HMPREF1078_RS19145 0.87 +0.4 841,915 + +0.3 841,947 + -0.7 841,953 - +1.0 841,971 + -1.6 841,973 + -0.6 841,973 + -0.0 841,973 + +0.8 841,973 + -0.3 842,080 + -2.4 842,089 + -3.4 842,161 - HMPREF1078_RS19150 0.14 -0.6 842,318 + HMPREF1078_RS19150 0.28 -4.3 842,319 - HMPREF1078_RS19150 0.28 -2.4 842,319 - HMPREF1078_RS19150 0.28 +0.4 842,830 + HMPREF1078_RS19150 0.74 -3.8 842,879 + HMPREF1078_RS19150 0.78 -3.0 842,888 + HMPREF1078_RS19150 0.79 -3.2 842,888 + HMPREF1078_RS19150 0.79 -4.3 842,909 + HMPREF1078_RS19150 0.81 -4.4 842,982 - HMPREF1078_RS19150 0.87 -3.8 842,988 - HMPREF1078_RS19150 0.88 -3.0 842,988 - HMPREF1078_RS19150 0.88 -3.2 843,003 + HMPREF1078_RS19150 0.89 -6.0 843,058 - -1.8 843,197 + -1.5 843,197 + +1.0 843,198 - -2.0 843,414 + HMPREF1078_RS07120 0.30 -1.7 843,434 + HMPREF1078_RS07120 0.32 +1.7 843,435 - HMPREF1078_RS07120 0.32 +1.6 843,525 - HMPREF1078_RS07120 0.43 -1.9 843,601 + HMPREF1078_RS07120 0.52 -1.8 843,601 + HMPREF1078_RS07120 0.52 +0.3 843,602 - HMPREF1078_RS07120 0.52 +1.6 843,603 + HMPREF1078_RS07120 0.52 +0.3 843,628 - HMPREF1078_RS07120 0.55 +0.6 843,726 + HMPREF1078_RS07120 0.66 +2.1 843,757 - HMPREF1078_RS07120 0.70 -1.1 843,852 + HMPREF1078_RS07120 0.81 -4.2 843,867 + HMPREF1078_RS07120 0.83 +1.2 843,903 + HMPREF1078_RS07120 0.87 +3.2 843,920 - HMPREF1078_RS07120 0.89 +2.9 843,921 + HMPREF1078_RS07120 0.89 -0.6 843,961 - -2.9 843,995 + +2.0 844,013 - +0.0 844,018 + +2.2 844,019 - +0.7 844,019 - -0.3 844,029 + +0.7 844,030 - -1.0 844,070 - -3.5 844,070 - +0.0 844,070 - -4.1 844,070 - -2.1
Or see this region's nucleotide sequence