Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS16320

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS16315 and HMPREF1078_RS16320 are separated by 8 nucleotidesHMPREF1078_RS16320 and HMPREF1078_RS16325 overlap by 8 nucleotidesHMPREF1078_RS16325 and HMPREF1078_RS16330 are separated by 118 nucleotides HMPREF1078_RS16315: HMPREF1078_RS16315 - GGGtGRT protein, at 390,378 to 391,379 _RS16315 HMPREF1078_RS16320: HMPREF1078_RS16320 - hypothetical protein, at 391,388 to 391,579 _RS16320 HMPREF1078_RS16325: HMPREF1078_RS16325 - nitrogen-fixing protein NifU, at 391,572 to 392,264 _RS16325 HMPREF1078_RS16330: HMPREF1078_RS16330 - redoxin domain-containing protein, at 392,383 to 393,501 _RS16330 Position (kb) 391 392Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 390.543 kb on - strand, within HMPREF1078_RS16315at 390.543 kb on - strand, within HMPREF1078_RS16315at 390.547 kb on + strand, within HMPREF1078_RS16315at 390.548 kb on - strand, within HMPREF1078_RS16315at 390.548 kb on - strand, within HMPREF1078_RS16315at 390.548 kb on - strand, within HMPREF1078_RS16315at 390.570 kb on - strand, within HMPREF1078_RS16315at 390.596 kb on + strand, within HMPREF1078_RS16315at 390.623 kb on - strand, within HMPREF1078_RS16315at 390.641 kb on + strand, within HMPREF1078_RS16315at 390.641 kb on + strand, within HMPREF1078_RS16315at 390.641 kb on + strand, within HMPREF1078_RS16315at 390.642 kb on - strand, within HMPREF1078_RS16315at 390.642 kb on - strand, within HMPREF1078_RS16315at 390.655 kb on + strand, within HMPREF1078_RS16315at 390.655 kb on + strand, within HMPREF1078_RS16315at 390.655 kb on + strand, within HMPREF1078_RS16315at 390.656 kb on - strand, within HMPREF1078_RS16315at 390.656 kb on - strand, within HMPREF1078_RS16315at 390.656 kb on - strand, within HMPREF1078_RS16315at 390.656 kb on - strand, within HMPREF1078_RS16315at 390.659 kb on + strand, within HMPREF1078_RS16315at 390.711 kb on - strand, within HMPREF1078_RS16315at 390.731 kb on + strand, within HMPREF1078_RS16315at 390.732 kb on - strand, within HMPREF1078_RS16315at 390.772 kb on + strand, within HMPREF1078_RS16315at 390.773 kb on - strand, within HMPREF1078_RS16315at 390.805 kb on + strand, within HMPREF1078_RS16315at 390.806 kb on - strand, within HMPREF1078_RS16315at 390.829 kb on - strand, within HMPREF1078_RS16315at 390.829 kb on - strand, within HMPREF1078_RS16315at 390.842 kb on + strand, within HMPREF1078_RS16315at 390.842 kb on + strand, within HMPREF1078_RS16315at 390.843 kb on - strand, within HMPREF1078_RS16315at 390.843 kb on - strand, within HMPREF1078_RS16315at 390.843 kb on - strand, within HMPREF1078_RS16315at 390.845 kb on - strand, within HMPREF1078_RS16315at 390.845 kb on - strand, within HMPREF1078_RS16315at 390.845 kb on - strand, within HMPREF1078_RS16315at 390.865 kb on + strand, within HMPREF1078_RS16315at 390.865 kb on + strand, within HMPREF1078_RS16315at 390.908 kb on + strand, within HMPREF1078_RS16315at 390.978 kb on - strand, within HMPREF1078_RS16315at 390.978 kb on - strand, within HMPREF1078_RS16315at 391.085 kb on + strand, within HMPREF1078_RS16315at 391.085 kb on + strand, within HMPREF1078_RS16315at 391.086 kb on - strand, within HMPREF1078_RS16315at 391.139 kb on + strand, within HMPREF1078_RS16315at 391.197 kb on + strand, within HMPREF1078_RS16315at 391.198 kb on - strand, within HMPREF1078_RS16315at 391.204 kb on + strand, within HMPREF1078_RS16315at 391.204 kb on + strand, within HMPREF1078_RS16315at 391.204 kb on + strand, within HMPREF1078_RS16315at 391.205 kb on - strand, within HMPREF1078_RS16315at 391.232 kb on + strand, within HMPREF1078_RS16315at 391.232 kb on + strand, within HMPREF1078_RS16315at 391.232 kb on + strand, within HMPREF1078_RS16315at 391.233 kb on - strand, within HMPREF1078_RS16315at 391.256 kb on + strand, within HMPREF1078_RS16315at 391.256 kb on + strand, within HMPREF1078_RS16315at 391.256 kb on + strand, within HMPREF1078_RS16315at 391.256 kb on + strand, within HMPREF1078_RS16315at 391.257 kb on - strand, within HMPREF1078_RS16315at 391.257 kb on - strand, within HMPREF1078_RS16315at 391.257 kb on - strand, within HMPREF1078_RS16315at 391.257 kb on - strand, within HMPREF1078_RS16315at 391.269 kb on - strand, within HMPREF1078_RS16315at 391.313 kb on + strandat 391.315 kb on - strandat 391.315 kb on - strandat 391.318 kb on + strandat 391.319 kb on - strandat 391.327 kb on - strandat 391.327 kb on - strandat 391.340 kb on + strandat 391.361 kb on - strandat 391.361 kb on - strandat 391.361 kb on - strandat 391.371 kb on + strandat 391.372 kb on - strandat 391.379 kb on + strandat 391.406 kb on - strandat 391.418 kb on + strand, within HMPREF1078_RS16320at 391.418 kb on + strand, within HMPREF1078_RS16320at 391.446 kb on - strand, within HMPREF1078_RS16320at 391.446 kb on - strand, within HMPREF1078_RS16320at 391.468 kb on - strand, within HMPREF1078_RS16320at 391.468 kb on - strand, within HMPREF1078_RS16320at 391.507 kb on - strand, within HMPREF1078_RS16320at 391.573 kb on + strandat 391.573 kb on + strandat 391.573 kb on + strandat 391.573 kb on + strandat 391.574 kb on - strandat 391.574 kb on - strandat 391.594 kb on + strandat 391.599 kb on + strandat 391.599 kb on + strandat 391.600 kb on - strandat 391.621 kb on + strandat 391.677 kb on - strand, within HMPREF1078_RS16325at 391.688 kb on + strand, within HMPREF1078_RS16325at 391.692 kb on + strand, within HMPREF1078_RS16325at 391.701 kb on - strand, within HMPREF1078_RS16325at 391.701 kb on - strand, within HMPREF1078_RS16325at 391.708 kb on + strand, within HMPREF1078_RS16325at 391.716 kb on + strand, within HMPREF1078_RS16325at 391.716 kb on + strand, within HMPREF1078_RS16325at 391.742 kb on + strand, within HMPREF1078_RS16325at 391.749 kb on - strand, within HMPREF1078_RS16325at 391.753 kb on + strand, within HMPREF1078_RS16325at 391.754 kb on - strand, within HMPREF1078_RS16325at 391.754 kb on - strand, within HMPREF1078_RS16325at 391.774 kb on + strand, within HMPREF1078_RS16325at 391.774 kb on + strand, within HMPREF1078_RS16325at 391.796 kb on + strand, within HMPREF1078_RS16325at 391.797 kb on - strand, within HMPREF1078_RS16325at 391.797 kb on - strand, within HMPREF1078_RS16325at 391.797 kb on - strand, within HMPREF1078_RS16325at 391.812 kb on + strand, within HMPREF1078_RS16325at 391.812 kb on + strand, within HMPREF1078_RS16325at 391.812 kb on + strand, within HMPREF1078_RS16325at 391.813 kb on - strand, within HMPREF1078_RS16325at 391.813 kb on - strand, within HMPREF1078_RS16325at 391.813 kb on - strand, within HMPREF1078_RS16325at 391.892 kb on + strand, within HMPREF1078_RS16325at 391.900 kb on + strand, within HMPREF1078_RS16325at 391.901 kb on - strand, within HMPREF1078_RS16325at 391.941 kb on - strand, within HMPREF1078_RS16325at 391.941 kb on - strand, within HMPREF1078_RS16325at 391.941 kb on - strand, within HMPREF1078_RS16325at 392.042 kb on + strand, within HMPREF1078_RS16325at 392.042 kb on + strand, within HMPREF1078_RS16325at 392.050 kb on - strand, within HMPREF1078_RS16325at 392.096 kb on + strand, within HMPREF1078_RS16325at 392.096 kb on + strand, within HMPREF1078_RS16325at 392.096 kb on + strand, within HMPREF1078_RS16325at 392.096 kb on + strand, within HMPREF1078_RS16325at 392.097 kb on - strand, within HMPREF1078_RS16325at 392.150 kb on + strand, within HMPREF1078_RS16325at 392.151 kb on - strand, within HMPREF1078_RS16325at 392.213 kb on + strandat 392.213 kb on + strandat 392.214 kb on - strandat 392.226 kb on + strandat 392.227 kb on - strandat 392.257 kb on + strandat 392.258 kb on - strandat 392.258 kb on - strandat 392.276 kb on + strandat 392.276 kb on + strandat 392.277 kb on - strandat 392.284 kb on + strandat 392.304 kb on - strandat 392.304 kb on - strandat 392.315 kb on - strandat 392.319 kb on + strandat 392.320 kb on - strandat 392.332 kb on - strandat 392.448 kb on + strandat 392.448 kb on + strandat 392.468 kb on - strandat 392.472 kb on + strandat 392.495 kb on + strand, within HMPREF1078_RS16330at 392.495 kb on + strand, within HMPREF1078_RS16330at 392.495 kb on + strand, within HMPREF1078_RS16330at 392.496 kb on - strand, within HMPREF1078_RS16330at 392.557 kb on + strand, within HMPREF1078_RS16330at 392.566 kb on + strand, within HMPREF1078_RS16330at 392.566 kb on + strand, within HMPREF1078_RS16330

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3
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390,543 - HMPREF1078_RS16315 0.16 -4.1
390,543 - HMPREF1078_RS16315 0.16 -2.6
390,547 + HMPREF1078_RS16315 0.17 -1.8
390,548 - HMPREF1078_RS16315 0.17 -3.3
390,548 - HMPREF1078_RS16315 0.17 -1.9
390,548 - HMPREF1078_RS16315 0.17 -2.8
390,570 - HMPREF1078_RS16315 0.19 -4.4
390,596 + HMPREF1078_RS16315 0.22 -3.0
390,623 - HMPREF1078_RS16315 0.24 -1.5
390,641 + HMPREF1078_RS16315 0.26 -1.5
390,641 + HMPREF1078_RS16315 0.26 -2.3
390,641 + HMPREF1078_RS16315 0.26 -0.1
390,642 - HMPREF1078_RS16315 0.26 -2.7
390,642 - HMPREF1078_RS16315 0.26 -1.9
390,655 + HMPREF1078_RS16315 0.28 -2.2
390,655 + HMPREF1078_RS16315 0.28 -2.6
390,655 + HMPREF1078_RS16315 0.28 -1.5
390,656 - HMPREF1078_RS16315 0.28 -1.7
390,656 - HMPREF1078_RS16315 0.28 -1.6
390,656 - HMPREF1078_RS16315 0.28 -1.7
390,656 - HMPREF1078_RS16315 0.28 -2.8
390,659 + HMPREF1078_RS16315 0.28 -3.1
390,711 - HMPREF1078_RS16315 0.33 -3.2
390,731 + HMPREF1078_RS16315 0.35 -2.3
390,732 - HMPREF1078_RS16315 0.35 -3.4
390,772 + HMPREF1078_RS16315 0.39 -3.0
390,773 - HMPREF1078_RS16315 0.39 -2.1
390,805 + HMPREF1078_RS16315 0.43 -3.5
390,806 - HMPREF1078_RS16315 0.43 -3.5
390,829 - HMPREF1078_RS16315 0.45 -2.1
390,829 - HMPREF1078_RS16315 0.45 -5.5
390,842 + HMPREF1078_RS16315 0.46 -3.0
390,842 + HMPREF1078_RS16315 0.46 -1.5
390,843 - HMPREF1078_RS16315 0.46 -2.6
390,843 - HMPREF1078_RS16315 0.46 -1.9
390,843 - HMPREF1078_RS16315 0.46 -1.4
390,845 - HMPREF1078_RS16315 0.47 -2.8
390,845 - HMPREF1078_RS16315 0.47 -1.7
390,845 - HMPREF1078_RS16315 0.47 -1.9
390,865 + HMPREF1078_RS16315 0.49 -0.8
390,865 + HMPREF1078_RS16315 0.49 -4.9
390,908 + HMPREF1078_RS16315 0.53 -1.3
390,978 - HMPREF1078_RS16315 0.60 -2.3
390,978 - HMPREF1078_RS16315 0.60 -3.3
391,085 + HMPREF1078_RS16315 0.71 -0.6
391,085 + HMPREF1078_RS16315 0.71 -3.1
391,086 - HMPREF1078_RS16315 0.71 -1.7
391,139 + HMPREF1078_RS16315 0.76 -0.4
391,197 + HMPREF1078_RS16315 0.82 -1.9
391,198 - HMPREF1078_RS16315 0.82 -3.0
391,204 + HMPREF1078_RS16315 0.82 -3.0
391,204 + HMPREF1078_RS16315 0.82 -1.5
391,204 + HMPREF1078_RS16315 0.82 -4.1
391,205 - HMPREF1078_RS16315 0.83 -4.5
391,232 + HMPREF1078_RS16315 0.85 -1.7
391,232 + HMPREF1078_RS16315 0.85 -2.4
391,232 + HMPREF1078_RS16315 0.85 -2.7
391,233 - HMPREF1078_RS16315 0.85 -1.6
391,256 + HMPREF1078_RS16315 0.88 -1.5
391,256 + HMPREF1078_RS16315 0.88 -2.1
391,256 + HMPREF1078_RS16315 0.88 -0.1
391,256 + HMPREF1078_RS16315 0.88 -3.7
391,257 - HMPREF1078_RS16315 0.88 -1.7
391,257 - HMPREF1078_RS16315 0.88 -1.8
391,257 - HMPREF1078_RS16315 0.88 -2.2
391,257 - HMPREF1078_RS16315 0.88 -3.4
391,269 - HMPREF1078_RS16315 0.89 -3.0
391,313 + -2.9
391,315 - -0.8
391,315 - -2.1
391,318 + -2.2
391,319 - -1.5
391,327 - -2.1
391,327 - -1.8
391,340 + -1.5
391,361 - -4.0
391,361 - -3.4
391,361 - -2.5
391,371 + -2.8
391,372 - -0.6
391,379 + -1.0
391,406 - +0.2
391,418 + HMPREF1078_RS16320 0.16 -2.9
391,418 + HMPREF1078_RS16320 0.16 -3.5
391,446 - HMPREF1078_RS16320 0.30 -2.2
391,446 - HMPREF1078_RS16320 0.30 -3.1
391,468 - HMPREF1078_RS16320 0.42 -0.7
391,468 - HMPREF1078_RS16320 0.42 -1.0
391,507 - HMPREF1078_RS16320 0.62 +0.6
391,573 + -3.7
391,573 + -4.5
391,573 + -2.9
391,573 + -0.1
391,574 - -3.7
391,574 - +0.5
391,594 + -0.4
391,599 + +0.2
391,599 + -2.7
391,600 - -2.3
391,621 + -3.3
391,677 - HMPREF1078_RS16325 0.15 -0.8
391,688 + HMPREF1078_RS16325 0.17 -0.1
391,692 + HMPREF1078_RS16325 0.17 -0.1
391,701 - HMPREF1078_RS16325 0.19 -0.8
391,701 - HMPREF1078_RS16325 0.19 -2.0
391,708 + HMPREF1078_RS16325 0.20 -0.8
391,716 + HMPREF1078_RS16325 0.21 -0.1
391,716 + HMPREF1078_RS16325 0.21 -1.5
391,742 + HMPREF1078_RS16325 0.25 -1.1
391,749 - HMPREF1078_RS16325 0.26 -3.2
391,753 + HMPREF1078_RS16325 0.26 -3.6
391,754 - HMPREF1078_RS16325 0.26 -1.5
391,754 - HMPREF1078_RS16325 0.26 -3.4
391,774 + HMPREF1078_RS16325 0.29 -3.4
391,774 + HMPREF1078_RS16325 0.29 -3.2
391,796 + HMPREF1078_RS16325 0.32 -2.9
391,797 - HMPREF1078_RS16325 0.32 -2.8
391,797 - HMPREF1078_RS16325 0.32 -2.9
391,797 - HMPREF1078_RS16325 0.32 -2.6
391,812 + HMPREF1078_RS16325 0.35 -1.6
391,812 + HMPREF1078_RS16325 0.35 -4.1
391,812 + HMPREF1078_RS16325 0.35 -4.0
391,813 - HMPREF1078_RS16325 0.35 -1.5
391,813 - HMPREF1078_RS16325 0.35 -3.7
391,813 - HMPREF1078_RS16325 0.35 -2.3
391,892 + HMPREF1078_RS16325 0.46 -3.5
391,900 + HMPREF1078_RS16325 0.47 -2.3
391,901 - HMPREF1078_RS16325 0.47 -3.3
391,941 - HMPREF1078_RS16325 0.53 -2.9
391,941 - HMPREF1078_RS16325 0.53 -3.1
391,941 - HMPREF1078_RS16325 0.53 -1.6
392,042 + HMPREF1078_RS16325 0.68 -1.0
392,042 + HMPREF1078_RS16325 0.68 -2.2
392,050 - HMPREF1078_RS16325 0.69 -3.0
392,096 + HMPREF1078_RS16325 0.76 -0.6
392,096 + HMPREF1078_RS16325 0.76 -0.6
392,096 + HMPREF1078_RS16325 0.76 -0.8
392,096 + HMPREF1078_RS16325 0.76 -2.8
392,097 - HMPREF1078_RS16325 0.76 -3.0
392,150 + HMPREF1078_RS16325 0.83 +1.2
392,151 - HMPREF1078_RS16325 0.84 -4.7
392,213 + -2.1
392,213 + -2.7
392,214 - -3.3
392,226 + -0.4
392,227 - -0.1
392,257 + -1.5
392,258 - -3.1
392,258 - -3.8
392,276 + -2.4
392,276 + -1.8
392,277 - -3.0
392,284 + -3.2
392,304 - -0.8
392,304 - -3.5
392,315 - -0.3
392,319 + -1.6
392,320 - +1.8
392,332 - +0.6
392,448 + +0.8
392,448 + -0.6
392,468 - -2.0
392,472 + -3.6
392,495 + HMPREF1078_RS16330 0.10 +0.0
392,495 + HMPREF1078_RS16330 0.10 +0.9
392,495 + HMPREF1078_RS16330 0.10 -2.0
392,496 - HMPREF1078_RS16330 0.10 +1.8
392,557 + HMPREF1078_RS16330 0.16 -0.5
392,566 + HMPREF1078_RS16330 0.16 +0.2
392,566 + HMPREF1078_RS16330 0.16 -0.8

Or see this region's nucleotide sequence