Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS15515 and HMPREF1078_RS15520 are separated by 100 nucleotides HMPREF1078_RS15520 and HMPREF1078_RS15525 are separated by 206 nucleotides HMPREF1078_RS15525 and HMPREF1078_RS15530 are separated by 11 nucleotides
HMPREF1078_RS15515: HMPREF1078_RS15515 - glycoside hydrolase family 2 TIM barrel-domain containing protein, at 197,830 to 201,207
_RS15515
HMPREF1078_RS15520: HMPREF1078_RS15520 - DUF3332 domain-containing protein, at 201,308 to 201,862
_RS15520
HMPREF1078_RS15525: HMPREF1078_RS15525 - RagB/SusD family nutrient uptake outer membrane protein, at 202,069 to 203,850
_RS15525
HMPREF1078_RS15530: HMPREF1078_RS15530 - TonB-dependent receptor, at 203,862 to 206,966
_RS15530
Position (kb) 202
203
204 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 201.072 kb on + strand at 201.166 kb on + strand at 201.166 kb on + strand at 201.167 kb on - strand at 201.167 kb on - strand at 201.208 kb on - strand at 201.218 kb on - strand at 201.233 kb on + strand at 201.234 kb on - strand at 201.274 kb on - strand at 201.274 kb on - strand at 201.274 kb on - strand at 201.274 kb on - strand at 201.322 kb on - strand at 201.330 kb on + strand at 201.359 kb on + strand at 201.360 kb on - strand at 201.360 kb on - strand at 201.380 kb on + strand, within HMPREF1078_RS15520 at 201.380 kb on + strand, within HMPREF1078_RS15520 at 201.381 kb on - strand, within HMPREF1078_RS15520 at 201.408 kb on + strand, within HMPREF1078_RS15520 at 201.408 kb on + strand, within HMPREF1078_RS15520 at 201.409 kb on - strand, within HMPREF1078_RS15520 at 201.409 kb on - strand, within HMPREF1078_RS15520 at 201.409 kb on - strand, within HMPREF1078_RS15520 at 201.409 kb on - strand, within HMPREF1078_RS15520 at 201.409 kb on - strand, within HMPREF1078_RS15520 at 201.471 kb on - strand, within HMPREF1078_RS15520 at 201.471 kb on - strand, within HMPREF1078_RS15520 at 201.471 kb on - strand, within HMPREF1078_RS15520 at 201.471 kb on - strand, within HMPREF1078_RS15520 at 201.570 kb on + strand, within HMPREF1078_RS15520 at 201.570 kb on + strand, within HMPREF1078_RS15520 at 201.570 kb on + strand, within HMPREF1078_RS15520 at 201.571 kb on - strand, within HMPREF1078_RS15520 at 201.571 kb on - strand, within HMPREF1078_RS15520 at 201.571 kb on - strand, within HMPREF1078_RS15520 at 201.688 kb on - strand, within HMPREF1078_RS15520 at 201.716 kb on + strand, within HMPREF1078_RS15520 at 201.716 kb on + strand, within HMPREF1078_RS15520 at 201.717 kb on - strand, within HMPREF1078_RS15520 at 201.729 kb on - strand, within HMPREF1078_RS15520 at 201.769 kb on + strand, within HMPREF1078_RS15520 at 201.807 kb on - strand at 201.809 kb on + strand at 201.809 kb on + strand at 201.809 kb on + strand at 201.810 kb on - strand at 201.810 kb on - strand at 201.810 kb on - strand at 201.810 kb on - strand at 201.810 kb on - strand at 201.810 kb on - strand at 201.839 kb on + strand at 201.839 kb on + strand at 201.839 kb on + strand at 201.840 kb on - strand at 201.866 kb on + strand at 201.871 kb on - strand at 201.873 kb on + strand at 201.879 kb on + strand at 201.910 kb on + strand at 201.940 kb on - strand at 201.943 kb on + strand at 201.991 kb on + strand at 202.031 kb on + strand at 202.031 kb on + strand at 202.060 kb on + strand at 202.071 kb on - strand at 202.074 kb on - strand at 202.081 kb on - strand at 202.100 kb on - strand at 202.131 kb on + strand at 202.226 kb on + strand at 202.247 kb on - strand at 202.247 kb on - strand at 202.340 kb on - strand, within HMPREF1078_RS15525 at 202.441 kb on + strand, within HMPREF1078_RS15525 at 202.491 kb on + strand, within HMPREF1078_RS15525 at 202.492 kb on - strand, within HMPREF1078_RS15525 at 202.575 kb on - strand, within HMPREF1078_RS15525 at 202.592 kb on + strand, within HMPREF1078_RS15525 at 202.593 kb on - strand, within HMPREF1078_RS15525 at 202.593 kb on - strand, within HMPREF1078_RS15525 at 202.637 kb on + strand, within HMPREF1078_RS15525 at 202.637 kb on + strand, within HMPREF1078_RS15525 at 202.638 kb on - strand, within HMPREF1078_RS15525 at 202.638 kb on - strand, within HMPREF1078_RS15525 at 202.638 kb on - strand, within HMPREF1078_RS15525 at 202.703 kb on - strand, within HMPREF1078_RS15525 at 202.704 kb on + strand, within HMPREF1078_RS15525 at 202.752 kb on + strand, within HMPREF1078_RS15525 at 202.752 kb on + strand, within HMPREF1078_RS15525 at 202.752 kb on + strand, within HMPREF1078_RS15525 at 202.752 kb on + strand, within HMPREF1078_RS15525 at 202.777 kb on - strand, within HMPREF1078_RS15525 at 202.795 kb on - strand, within HMPREF1078_RS15525 at 202.917 kb on - strand, within HMPREF1078_RS15525 at 202.927 kb on - strand, within HMPREF1078_RS15525 at 202.955 kb on + strand, within HMPREF1078_RS15525 at 202.955 kb on + strand, within HMPREF1078_RS15525 at 202.956 kb on - strand, within HMPREF1078_RS15525 at 202.969 kb on + strand, within HMPREF1078_RS15525 at 202.969 kb on + strand, within HMPREF1078_RS15525 at 202.970 kb on - strand, within HMPREF1078_RS15525 at 203.063 kb on + strand, within HMPREF1078_RS15525 at 203.063 kb on + strand, within HMPREF1078_RS15525 at 203.064 kb on - strand, within HMPREF1078_RS15525 at 203.064 kb on - strand, within HMPREF1078_RS15525 at 203.064 kb on - strand, within HMPREF1078_RS15525 at 203.077 kb on + strand, within HMPREF1078_RS15525 at 203.081 kb on + strand, within HMPREF1078_RS15525 at 203.158 kb on - strand, within HMPREF1078_RS15525 at 203.253 kb on + strand, within HMPREF1078_RS15525 at 203.254 kb on - strand, within HMPREF1078_RS15525 at 203.254 kb on - strand, within HMPREF1078_RS15525 at 203.254 kb on - strand, within HMPREF1078_RS15525 at 203.254 kb on - strand, within HMPREF1078_RS15525 at 203.277 kb on + strand, within HMPREF1078_RS15525 at 203.278 kb on - strand, within HMPREF1078_RS15525 at 203.317 kb on + strand, within HMPREF1078_RS15525 at 203.367 kb on - strand, within HMPREF1078_RS15525 at 203.381 kb on + strand, within HMPREF1078_RS15525 at 203.390 kb on - strand, within HMPREF1078_RS15525 at 203.390 kb on - strand, within HMPREF1078_RS15525 at 203.390 kb on - strand, within HMPREF1078_RS15525 at 203.390 kb on - strand, within HMPREF1078_RS15525 at 203.438 kb on + strand, within HMPREF1078_RS15525 at 203.438 kb on + strand, within HMPREF1078_RS15525 at 203.438 kb on + strand, within HMPREF1078_RS15525 at 203.439 kb on - strand, within HMPREF1078_RS15525 at 203.454 kb on + strand, within HMPREF1078_RS15525 at 203.455 kb on - strand, within HMPREF1078_RS15525 at 203.556 kb on + strand, within HMPREF1078_RS15525 at 203.557 kb on - strand, within HMPREF1078_RS15525 at 203.558 kb on + strand, within HMPREF1078_RS15525 at 203.570 kb on + strand, within HMPREF1078_RS15525 at 203.572 kb on + strand, within HMPREF1078_RS15525 at 203.572 kb on + strand, within HMPREF1078_RS15525 at 203.572 kb on + strand, within HMPREF1078_RS15525 at 203.572 kb on + strand, within HMPREF1078_RS15525 at 203.602 kb on - strand, within HMPREF1078_RS15525 at 203.634 kb on - strand, within HMPREF1078_RS15525 at 203.646 kb on + strand, within HMPREF1078_RS15525 at 203.691 kb on - strand at 203.707 kb on - strand at 203.708 kb on + strand at 203.709 kb on - strand at 203.833 kb on - strand at 203.833 kb on - strand at 203.833 kb on - strand at 203.835 kb on + strand at 203.836 kb on - strand at 203.994 kb on + strand at 204.021 kb on + strand at 204.050 kb on + strand at 204.116 kb on + strand at 204.117 kb on - strand at 204.129 kb on - strand at 204.152 kb on - strand at 204.156 kb on - strand at 204.185 kb on + strand, within HMPREF1078_RS15530 at 204.299 kb on + strand, within HMPREF1078_RS15530 at 204.300 kb on - strand, within HMPREF1078_RS15530 at 204.324 kb on + strand, within HMPREF1078_RS15530 at 204.343 kb on + strand, within HMPREF1078_RS15530 at 204.343 kb on + strand, within HMPREF1078_RS15530 at 204.347 kb on + strand, within HMPREF1078_RS15530 at 204.348 kb on - strand, within HMPREF1078_RS15530 at 204.348 kb on - strand, within HMPREF1078_RS15530 at 204.348 kb on - strand, within HMPREF1078_RS15530 at 204.374 kb on - strand, within HMPREF1078_RS15530 at 204.418 kb on - strand, within HMPREF1078_RS15530 at 204.422 kb on - strand, within HMPREF1078_RS15530 at 204.459 kb on + strand, within HMPREF1078_RS15530 at 204.464 kb on - strand, within HMPREF1078_RS15530 at 204.464 kb on - strand, within HMPREF1078_RS15530 at 204.464 kb on - strand, within HMPREF1078_RS15530 at 204.517 kb on + strand, within HMPREF1078_RS15530 at 204.595 kb on - strand, within HMPREF1078_RS15530 at 204.595 kb on - strand, within HMPREF1078_RS15530 at 204.599 kb on + strand, within HMPREF1078_RS15530 at 204.599 kb on + strand, within HMPREF1078_RS15530 at 204.690 kb on - strand, within HMPREF1078_RS15530 at 204.721 kb on + strand, within HMPREF1078_RS15530 at 204.722 kb on - strand, within HMPREF1078_RS15530 at 204.762 kb on + strand, within HMPREF1078_RS15530 at 204.762 kb on + strand, within HMPREF1078_RS15530 at 204.763 kb on - strand, within HMPREF1078_RS15530 at 204.765 kb on + strand, within HMPREF1078_RS15530 at 204.766 kb on - strand, within HMPREF1078_RS15530 at 204.766 kb on - strand, within HMPREF1078_RS15530 at 204.790 kb on + strand, within HMPREF1078_RS15530
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 remove 201,072 + -2.4 201,166 + -0.7 201,166 + -3.8 201,167 - -1.0 201,167 - -0.2 201,208 - -3.3 201,218 - -0.8 201,233 + -1.2 201,234 - +1.6 201,274 - -0.6 201,274 - -2.0 201,274 - +0.4 201,274 - -0.6 201,322 - -0.5 201,330 + -3.1 201,359 + -3.4 201,360 - -1.7 201,360 - -3.4 201,380 + HMPREF1078_RS15520 0.13 -3.3 201,380 + HMPREF1078_RS15520 0.13 -2.9 201,381 - HMPREF1078_RS15520 0.13 -0.7 201,408 + HMPREF1078_RS15520 0.18 -0.9 201,408 + HMPREF1078_RS15520 0.18 -1.2 201,409 - HMPREF1078_RS15520 0.18 -0.1 201,409 - HMPREF1078_RS15520 0.18 +1.4 201,409 - HMPREF1078_RS15520 0.18 -0.7 201,409 - HMPREF1078_RS15520 0.18 -0.7 201,409 - HMPREF1078_RS15520 0.18 -2.9 201,471 - HMPREF1078_RS15520 0.29 +0.2 201,471 - HMPREF1078_RS15520 0.29 -0.1 201,471 - HMPREF1078_RS15520 0.29 -1.4 201,471 - HMPREF1078_RS15520 0.29 +1.2 201,570 + HMPREF1078_RS15520 0.47 -0.9 201,570 + HMPREF1078_RS15520 0.47 -2.0 201,570 + HMPREF1078_RS15520 0.47 -1.0 201,571 - HMPREF1078_RS15520 0.47 +0.1 201,571 - HMPREF1078_RS15520 0.47 +0.0 201,571 - HMPREF1078_RS15520 0.47 -3.4 201,688 - HMPREF1078_RS15520 0.68 +0.9 201,716 + HMPREF1078_RS15520 0.74 -2.2 201,716 + HMPREF1078_RS15520 0.74 -2.8 201,717 - HMPREF1078_RS15520 0.74 +0.6 201,729 - HMPREF1078_RS15520 0.76 -1.8 201,769 + HMPREF1078_RS15520 0.83 -1.6 201,807 - -0.2 201,809 + +0.6 201,809 + -3.8 201,809 + -4.3 201,810 - -2.4 201,810 - -2.8 201,810 - -0.8 201,810 - -0.3 201,810 - -1.0 201,810 - +0.7 201,839 + -2.4 201,839 + -2.7 201,839 + -3.4 201,840 - -2.3 201,866 + -2.8 201,871 - -1.0 201,873 + -1.2 201,879 + -1.3 201,910 + -3.4 201,940 - -0.2 201,943 + +1.1 201,991 + -1.3 202,031 + -1.8 202,031 + -3.3 202,060 + -0.3 202,071 - -0.2 202,074 - -4.0 202,081 - -2.2 202,100 - -2.4 202,131 + -4.1 202,226 + -2.7 202,247 - -2.7 202,247 - -1.0 202,340 - HMPREF1078_RS15525 0.15 -3.9 202,441 + HMPREF1078_RS15525 0.21 -1.0 202,491 + HMPREF1078_RS15525 0.24 -2.1 202,492 - HMPREF1078_RS15525 0.24 -1.1 202,575 - HMPREF1078_RS15525 0.28 -3.1 202,592 + HMPREF1078_RS15525 0.29 -0.9 202,593 - HMPREF1078_RS15525 0.29 -3.0 202,593 - HMPREF1078_RS15525 0.29 -0.9 202,637 + HMPREF1078_RS15525 0.32 -3.9 202,637 + HMPREF1078_RS15525 0.32 -1.5 202,638 - HMPREF1078_RS15525 0.32 -3.8 202,638 - HMPREF1078_RS15525 0.32 -0.9 202,638 - HMPREF1078_RS15525 0.32 -0.4 202,703 - HMPREF1078_RS15525 0.36 -1.7 202,704 + HMPREF1078_RS15525 0.36 +1.5 202,752 + HMPREF1078_RS15525 0.38 -2.2 202,752 + HMPREF1078_RS15525 0.38 +0.1 202,752 + HMPREF1078_RS15525 0.38 -0.4 202,752 + HMPREF1078_RS15525 0.38 -2.9 202,777 - HMPREF1078_RS15525 0.40 -2.5 202,795 - HMPREF1078_RS15525 0.41 -2.4 202,917 - HMPREF1078_RS15525 0.48 -1.7 202,927 - HMPREF1078_RS15525 0.48 -2.6 202,955 + HMPREF1078_RS15525 0.50 -1.8 202,955 + HMPREF1078_RS15525 0.50 -0.9 202,956 - HMPREF1078_RS15525 0.50 -3.4 202,969 + HMPREF1078_RS15525 0.51 -4.4 202,969 + HMPREF1078_RS15525 0.51 -3.0 202,970 - HMPREF1078_RS15525 0.51 -3.0 203,063 + HMPREF1078_RS15525 0.56 -0.8 203,063 + HMPREF1078_RS15525 0.56 -1.0 203,064 - HMPREF1078_RS15525 0.56 -2.1 203,064 - HMPREF1078_RS15525 0.56 -0.3 203,064 - HMPREF1078_RS15525 0.56 -1.9 203,077 + HMPREF1078_RS15525 0.57 -1.7 203,081 + HMPREF1078_RS15525 0.57 -0.5 203,158 - HMPREF1078_RS15525 0.61 -2.5 203,253 + HMPREF1078_RS15525 0.66 -1.4 203,254 - HMPREF1078_RS15525 0.66 -2.1 203,254 - HMPREF1078_RS15525 0.66 -3.2 203,254 - HMPREF1078_RS15525 0.66 +0.1 203,254 - HMPREF1078_RS15525 0.66 -1.9 203,277 + HMPREF1078_RS15525 0.68 +0.4 203,278 - HMPREF1078_RS15525 0.68 -2.9 203,317 + HMPREF1078_RS15525 0.70 -2.1 203,367 - HMPREF1078_RS15525 0.73 -2.2 203,381 + HMPREF1078_RS15525 0.74 -1.3 203,390 - HMPREF1078_RS15525 0.74 -2.4 203,390 - HMPREF1078_RS15525 0.74 -0.0 203,390 - HMPREF1078_RS15525 0.74 -2.0 203,390 - HMPREF1078_RS15525 0.74 -1.7 203,438 + HMPREF1078_RS15525 0.77 -1.9 203,438 + HMPREF1078_RS15525 0.77 -0.4 203,438 + HMPREF1078_RS15525 0.77 -2.2 203,439 - HMPREF1078_RS15525 0.77 -2.3 203,454 + HMPREF1078_RS15525 0.78 -2.6 203,455 - HMPREF1078_RS15525 0.78 -2.3 203,556 + HMPREF1078_RS15525 0.83 -2.2 203,557 - HMPREF1078_RS15525 0.84 -3.7 203,558 + HMPREF1078_RS15525 0.84 -4.4 203,570 + HMPREF1078_RS15525 0.84 -2.0 203,572 + HMPREF1078_RS15525 0.84 -1.3 203,572 + HMPREF1078_RS15525 0.84 -3.9 203,572 + HMPREF1078_RS15525 0.84 -2.4 203,572 + HMPREF1078_RS15525 0.84 -3.1 203,602 - HMPREF1078_RS15525 0.86 -3.4 203,634 - HMPREF1078_RS15525 0.88 -0.5 203,646 + HMPREF1078_RS15525 0.88 -2.7 203,691 - -2.7 203,707 - -2.9 203,708 + -0.9 203,709 - -2.1 203,833 - -3.8 203,833 - -2.8 203,833 - +1.9 203,835 + -1.2 203,836 - -0.7 203,994 + -2.8 204,021 + -0.7 204,050 + -2.4 204,116 + -1.0 204,117 - -2.0 204,129 - -1.8 204,152 - -0.9 204,156 - -3.5 204,185 + HMPREF1078_RS15530 0.10 -1.8 204,299 + HMPREF1078_RS15530 0.14 -1.4 204,300 - HMPREF1078_RS15530 0.14 -1.5 204,324 + HMPREF1078_RS15530 0.15 -1.7 204,343 + HMPREF1078_RS15530 0.15 -0.2 204,343 + HMPREF1078_RS15530 0.15 -1.3 204,347 + HMPREF1078_RS15530 0.16 -2.9 204,348 - HMPREF1078_RS15530 0.16 -1.9 204,348 - HMPREF1078_RS15530 0.16 -3.6 204,348 - HMPREF1078_RS15530 0.16 -0.4 204,374 - HMPREF1078_RS15530 0.16 -3.6 204,418 - HMPREF1078_RS15530 0.18 -3.9 204,422 - HMPREF1078_RS15530 0.18 -0.1 204,459 + HMPREF1078_RS15530 0.19 -2.6 204,464 - HMPREF1078_RS15530 0.19 -2.0 204,464 - HMPREF1078_RS15530 0.19 -2.0 204,464 - HMPREF1078_RS15530 0.19 -5.7 204,517 + HMPREF1078_RS15530 0.21 -4.2 204,595 - HMPREF1078_RS15530 0.24 -3.5 204,595 - HMPREF1078_RS15530 0.24 -3.8 204,599 + HMPREF1078_RS15530 0.24 -0.3 204,599 + HMPREF1078_RS15530 0.24 -2.8 204,690 - HMPREF1078_RS15530 0.27 -4.3 204,721 + HMPREF1078_RS15530 0.28 +0.7 204,722 - HMPREF1078_RS15530 0.28 -0.4 204,762 + HMPREF1078_RS15530 0.29 -2.0 204,762 + HMPREF1078_RS15530 0.29 +1.6 204,763 - HMPREF1078_RS15530 0.29 -0.9 204,765 + HMPREF1078_RS15530 0.29 -4.0 204,766 - HMPREF1078_RS15530 0.29 -3.2 204,766 - HMPREF1078_RS15530 0.29 -3.0 204,790 + HMPREF1078_RS15530 0.30 -0.3
Or see this region's nucleotide sequence