Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS15270

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3
138,909	-				-1.7
138,909	-				-1.0
138,920	+				+2.2
138,935	+				+2.1
138,936	-				-0.7
138,942	+				-0.4
138,942	+				-3.5
138,943	-				-1.9
138,949	+				+0.8
138,991	+				-0.3
138,992	-				-1.7
138,992	-				-1.8
138,992	-				-0.9
138,992	-				+0.1
138,992	-				-1.3
138,999	+				+1.3
138,999	+				-3.9
139,003	+				-4.2
139,004	-				-1.0
139,044	-				-2.2
139,044	-				-2.2
139,044	-				-2.0
139,058	-				-1.2
139,061	+				-0.7
139,061	+				-0.2
139,069	+				-0.9
139,124	+				-1.3
139,124	+				-1.9
139,125	-				-0.2
139,125	-				+0.6
139,125	-				-3.4
139,137	-				+0.1
139,137	-				+0.6
139,142	+				-1.4
139,227	+		HMPREF1078_RS15270	0.14	-1.0
139,258	-		HMPREF1078_RS15270	0.16	-0.7
139,275	-		HMPREF1078_RS15270	0.17	-2.3
139,289	+		HMPREF1078_RS15270	0.18	-0.7
139,290	-		HMPREF1078_RS15270	0.18	-1.6
139,340	+		HMPREF1078_RS15270	0.22	+0.6
139,442	+		HMPREF1078_RS15270	0.30	-1.8
139,442	+		HMPREF1078_RS15270	0.30	+0.1
139,482	+		HMPREF1078_RS15270	0.33	-1.4
139,483	-		HMPREF1078_RS15270	0.33	-2.0
139,483	-		HMPREF1078_RS15270	0.33	-4.0
139,585	+		HMPREF1078_RS15270	0.41	-3.4
139,603	+		HMPREF1078_RS15270	0.42	-1.6
139,630	-		HMPREF1078_RS15270	0.44	-0.7
139,634	-		HMPREF1078_RS15270	0.44	+0.1
139,634	-		HMPREF1078_RS15270	0.44	-0.9
139,634	-		HMPREF1078_RS15270	0.44	-1.9
139,668	-		HMPREF1078_RS15270	0.47	-1.7
139,668	-		HMPREF1078_RS15270	0.47	-0.7
139,677	-		HMPREF1078_RS15270	0.47	-2.1
139,785	-		HMPREF1078_RS15270	0.56	+2.1
139,794	-		HMPREF1078_RS15270	0.56	+0.6
139,797	-		HMPREF1078_RS15270	0.56	-1.2
139,821	+		HMPREF1078_RS15270	0.58	-1.8
139,829	-		HMPREF1078_RS15270	0.59	-0.7
139,850	+		HMPREF1078_RS15270	0.60	-1.5
139,851	-		HMPREF1078_RS15270	0.60	-0.9
139,851	-		HMPREF1078_RS15270	0.60	-0.4
139,865	-		HMPREF1078_RS15270	0.61	-1.6
139,865	-		HMPREF1078_RS15270	0.61	-0.9
139,914	-		HMPREF1078_RS15270	0.65	-2.4
139,919	+		HMPREF1078_RS15270	0.66	-1.7
139,938	-		HMPREF1078_RS15270	0.67	-0.4
139,941	+		HMPREF1078_RS15270	0.67	-3.2
139,941	+		HMPREF1078_RS15270	0.67	-2.4
139,961	+		HMPREF1078_RS15270	0.69	-0.7
139,961	+		HMPREF1078_RS15270	0.69	-1.4
139,962	-		HMPREF1078_RS15270	0.69	-1.0
139,962	-		HMPREF1078_RS15270	0.69	-1.6
139,962	-		HMPREF1078_RS15270	0.69	-1.7
139,965	+		HMPREF1078_RS15270	0.69	+0.1
139,966	-		HMPREF1078_RS15270	0.69	-2.2
139,966	-		HMPREF1078_RS15270	0.69	-1.8
139,966	-		HMPREF1078_RS15270	0.69	-1.0
139,966	-		HMPREF1078_RS15270	0.69	-1.0
139,966	-		HMPREF1078_RS15270	0.69	-0.9
139,986	+		HMPREF1078_RS15270	0.71	-1.3
140,018	+		HMPREF1078_RS15270	0.73	-0.0
140,018	+		HMPREF1078_RS15270	0.73	-0.4
140,018	+		HMPREF1078_RS15270	0.73	-0.7
140,018	+		HMPREF1078_RS15270	0.73	+0.6
140,018	+		HMPREF1078_RS15270	0.73	-1.3
140,018	+		HMPREF1078_RS15270	0.73	-1.6
140,019	-		HMPREF1078_RS15270	0.73	-1.2
140,019	-		HMPREF1078_RS15270	0.73	-2.1
140,023	+		HMPREF1078_RS15270	0.73	-1.0
140,024	-		HMPREF1078_RS15270	0.73	-2.9
140,047	-		HMPREF1078_RS15270	0.75	-0.4
140,064	+		HMPREF1078_RS15270	0.76	-2.9
140,064	+		HMPREF1078_RS15270	0.76	+0.9
140,065	-		HMPREF1078_RS15270	0.76	-2.5
140,065	-		HMPREF1078_RS15270	0.76	-0.9
140,072	+		HMPREF1078_RS15270	0.77	-0.2
140,178	-		HMPREF1078_RS15270	0.85	-1.6
140,178	-		HMPREF1078_RS15270	0.85	+2.1
140,178	-		HMPREF1078_RS15270	0.85	-1.9
140,199	-		HMPREF1078_RS15270	0.87	-2.3
140,293	-				-2.1
140,293	-				-1.9
140,338	-				-2.2
140,338	-				-2.4
140,377	-				+1.9
140,378	-				-0.8
140,385	-				+1.3
140,390	+				+1.3
140,391	+				+0.3
140,391	+				+1.8
140,391	+				+1.2
140,391	+				-0.9
140,391	+				-1.9
140,392	-				-1.0
140,392	-				+0.6
140,392	-				-2.8
140,393	+				-0.4
140,393	+				-1.8
140,393	+				-1.3
140,394	-				+1.0
140,394	-				-1.3
140,394	-				+2.1
140,394	-				-2.0
140,399	+				-0.5
140,525	-				-0.8
140,525	-				-0.4
140,525	-				-1.7
140,541	-				-0.2
140,541	-				+0.7
140,544	+				+0.9
140,544	+				-0.9
140,544	+				+0.4
140,544	+				-3.8
140,544	+				-2.6
140,545	-				-0.0
140,545	-				+0.2
140,545	-				-1.0
140,545	-				+2.7
140,583	-				-0.4
140,626	+		HMPREF1078_RS15275	0.15	-1.9
140,627	-		HMPREF1078_RS15275	0.15	-0.4
140,648	+		HMPREF1078_RS15275	0.18	-0.8
140,661	-		HMPREF1078_RS15275	0.20	-3.8
140,720	-		HMPREF1078_RS15275	0.29	-0.2
140,730	+		HMPREF1078_RS15275	0.31	+1.3
140,731	-		HMPREF1078_RS15275	0.31	+0.1
140,736	-		HMPREF1078_RS15275	0.31	+0.8
140,736	-		HMPREF1078_RS15275	0.31	-1.2
140,736	-		HMPREF1078_RS15275	0.31	+0.0
140,751	+		HMPREF1078_RS15275	0.34	+0.3
140,752	-		HMPREF1078_RS15275	0.34	+1.2
140,796	+		HMPREF1078_RS15275	0.40	-4.0
140,796	+		HMPREF1078_RS15275	0.40	-4.6
140,797	-		HMPREF1078_RS15275	0.40	+1.8
140,866	+		HMPREF1078_RS15275	0.51	+3.2
140,866	+		HMPREF1078_RS15275	0.51	-0.4
140,867	-		HMPREF1078_RS15275	0.51	-0.2
140,867	-		HMPREF1078_RS15275	0.51	-0.4
140,867	-		HMPREF1078_RS15275	0.51	+0.1
140,872	+		HMPREF1078_RS15275	0.51	+1.4
140,977	+		HMPREF1078_RS15275	0.67	+1.4
140,977	+		HMPREF1078_RS15275	0.67	-0.2
140,977	+		HMPREF1078_RS15275	0.67	+0.3
141,180	-				-0.9
141,180	-				-1.9
141,184	-				-0.5
141,184	-				-2.7
141,211	-				+0.2
141,225	-				+0.5
141,225	-				-1.4
141,225	-				+0.1
141,225	-				-1.3
141,227	+				-0.7
141,229	+				+0.1
141,231	+				+2.1
141,232	-				+1.8
141,243	+				+0.7
141,244	-				-2.2