Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS14590 and HMPREF1078_RS14595 overlap by 4 nucleotides HMPREF1078_RS14595 and HMPREF1078_RS14600 are separated by 293 nucleotides HMPREF1078_RS14600 and HMPREF1078_RS14605 are separated by 10 nucleotides HMPREF1078_RS14605 and HMPREF1078_RS14610 are separated by 55 nucleotides HMPREF1078_RS14610 and HMPREF1078_RS14615 are separated by 76 nucleotides
HMPREF1078_RS14590: HMPREF1078_RS14590 - hypothetical protein, at 416,488 to 416,691
_RS14590
HMPREF1078_RS14595: HMPREF1078_RS14595 - hypothetical protein, at 416,688 to 417,011
_RS14595
HMPREF1078_RS14600: HMPREF1078_RS14600 - tRNA-Gly, at 417,305 to 417,377
_RS14600
HMPREF1078_RS14605: HMPREF1078_RS14605 - tRNA-Tyr, at 417,388 to 417,470
_RS14605
HMPREF1078_RS14610: HMPREF1078_RS14610 - 6,7-dimethyl-8-ribityllumazine synthase, at 417,526 to 418,008
_RS14610
HMPREF1078_RS14615: HMPREF1078_RS14615 - tetratricopeptide repeat protein, at 418,085 to 418,771
_RS14615
Position (kb) 417
418 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 416.311 kb on + strand at 416.312 kb on - strand at 416.329 kb on - strand at 416.329 kb on - strand at 416.350 kb on + strand at 416.351 kb on - strand at 416.351 kb on - strand at 416.351 kb on - strand at 416.361 kb on - strand at 416.361 kb on - strand at 416.391 kb on + strand at 416.392 kb on - strand at 416.407 kb on + strand at 416.407 kb on + strand at 416.407 kb on + strand at 416.408 kb on - strand at 416.411 kb on + strand at 416.419 kb on + strand at 416.448 kb on + strand at 416.451 kb on + strand at 416.451 kb on + strand at 416.451 kb on + strand at 416.451 kb on + strand at 416.451 kb on + strand at 416.460 kb on + strand at 416.475 kb on - strand at 416.482 kb on - strand at 416.521 kb on + strand, within HMPREF1078_RS14590 at 416.522 kb on - strand, within HMPREF1078_RS14590 at 416.597 kb on + strand, within HMPREF1078_RS14590 at 416.603 kb on + strand, within HMPREF1078_RS14590 at 416.603 kb on + strand, within HMPREF1078_RS14590 at 416.617 kb on + strand, within HMPREF1078_RS14590 at 416.620 kb on - strand, within HMPREF1078_RS14590 at 416.620 kb on - strand, within HMPREF1078_RS14590 at 416.625 kb on + strand, within HMPREF1078_RS14590 at 416.626 kb on - strand, within HMPREF1078_RS14590 at 416.634 kb on + strand, within HMPREF1078_RS14590 at 416.635 kb on - strand, within HMPREF1078_RS14590 at 416.662 kb on + strand, within HMPREF1078_RS14590 at 416.663 kb on - strand, within HMPREF1078_RS14590 at 416.663 kb on - strand, within HMPREF1078_RS14590 at 416.663 kb on - strand, within HMPREF1078_RS14590 at 416.668 kb on + strand, within HMPREF1078_RS14590 at 416.669 kb on - strand, within HMPREF1078_RS14590 at 416.690 kb on - strand at 416.690 kb on - strand at 416.757 kb on + strand, within HMPREF1078_RS14595 at 416.768 kb on - strand, within HMPREF1078_RS14595 at 416.768 kb on - strand, within HMPREF1078_RS14595 at 416.770 kb on - strand, within HMPREF1078_RS14595 at 416.872 kb on - strand, within HMPREF1078_RS14595 at 416.901 kb on + strand, within HMPREF1078_RS14595 at 416.902 kb on - strand, within HMPREF1078_RS14595 at 416.921 kb on + strand, within HMPREF1078_RS14595 at 416.922 kb on - strand, within HMPREF1078_RS14595 at 416.935 kb on + strand, within HMPREF1078_RS14595 at 416.936 kb on - strand, within HMPREF1078_RS14595 at 416.982 kb on + strand at 416.983 kb on - strand at 416.985 kb on + strand at 416.985 kb on + strand at 416.985 kb on + strand at 416.985 kb on + strand at 416.985 kb on + strand at 416.986 kb on - strand at 416.989 kb on + strand at 416.989 kb on + strand at 416.989 kb on + strand at 416.989 kb on + strand at 416.989 kb on + strand at 416.989 kb on + strand at 416.990 kb on - strand at 416.990 kb on - strand at 417.011 kb on + strand at 417.012 kb on - strand at 417.013 kb on + strand at 417.013 kb on + strand at 417.014 kb on - strand at 417.014 kb on - strand at 417.014 kb on - strand at 417.014 kb on - strand at 417.014 kb on - strand at 417.014 kb on - strand at 417.028 kb on - strand at 417.031 kb on + strand at 417.058 kb on + strand at 417.059 kb on - strand at 417.091 kb on + strand at 417.139 kb on + strand at 417.139 kb on + strand at 417.139 kb on + strand at 417.141 kb on + strand at 417.141 kb on + strand at 417.141 kb on + strand at 417.141 kb on + strand at 417.141 kb on + strand at 417.141 kb on + strand at 417.141 kb on + strand at 417.141 kb on + strand at 417.141 kb on + strand at 417.141 kb on + strand at 417.141 kb on + strand at 417.141 kb on + strand at 417.141 kb on + strand at 417.142 kb on - strand at 417.142 kb on - strand at 417.142 kb on - strand at 417.142 kb on - strand at 417.142 kb on - strand at 417.145 kb on + strand at 417.145 kb on + strand at 417.145 kb on + strand at 417.145 kb on + strand at 417.145 kb on + strand at 417.145 kb on + strand at 417.145 kb on + strand at 417.145 kb on + strand at 417.145 kb on + strand at 417.145 kb on + strand at 417.145 kb on + strand at 417.145 kb on + strand at 417.145 kb on + strand at 417.145 kb on + strand at 417.145 kb on + strand at 417.146 kb on - strand at 417.146 kb on - strand at 417.146 kb on - strand at 417.146 kb on - strand at 417.146 kb on - strand at 417.146 kb on - strand at 417.146 kb on - strand at 417.146 kb on - strand at 417.146 kb on - strand at 417.146 kb on - strand at 417.147 kb on + strand at 417.147 kb on + strand at 417.147 kb on + strand at 417.147 kb on + strand at 417.147 kb on + strand at 417.147 kb on + strand at 417.148 kb on - strand at 417.148 kb on - strand at 417.148 kb on - strand at 417.148 kb on - strand at 417.148 kb on - strand at 417.148 kb on - strand at 417.178 kb on + strand at 417.178 kb on + strand at 417.179 kb on - strand at 417.180 kb on + strand at 417.181 kb on - strand at 417.181 kb on - strand at 417.181 kb on - strand at 417.212 kb on + strand at 417.212 kb on + strand at 417.212 kb on + strand at 417.213 kb on - strand at 417.243 kb on + strand at 417.244 kb on - strand at 417.244 kb on - strand at 417.244 kb on - strand at 417.247 kb on + strand at 417.247 kb on + strand at 417.248 kb on - strand at 417.248 kb on - strand at 417.369 kb on + strand, within HMPREF1078_RS14600 at 417.499 kb on - strand at 418.060 kb on - strand at 418.060 kb on - strand at 418.062 kb on - strand at 418.062 kb on - strand at 418.062 kb on - strand at 418.062 kb on - strand at 418.068 kb on - strand at 418.068 kb on - strand at 418.068 kb on - strand at 418.070 kb on - strand at 418.080 kb on - strand at 418.080 kb on - strand at 418.080 kb on - strand at 418.080 kb on - strand at 418.082 kb on - strand at 418.082 kb on - strand at 418.082 kb on - strand at 418.082 kb on - strand at 418.082 kb on - strand at 418.082 kb on - strand at 418.082 kb on - strand at 418.087 kb on - strand at 418.087 kb on - strand at 418.087 kb on - strand at 418.087 kb on - strand at 418.115 kb on - strand at 418.115 kb on - strand at 418.115 kb on - strand at 418.117 kb on - strand at 418.117 kb on - strand at 418.117 kb on - strand at 418.174 kb on - strand, within HMPREF1078_RS14615 at 418.320 kb on - strand, within HMPREF1078_RS14615 at 418.324 kb on - strand, within HMPREF1078_RS14615 at 418.324 kb on - strand, within HMPREF1078_RS14615 at 418.324 kb on - strand, within HMPREF1078_RS14615
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 remove 416,311 + -1.7 416,312 - +1.9 416,329 - -1.4 416,329 - -2.1 416,350 + -1.0 416,351 - -1.1 416,351 - -2.4 416,351 - -1.9 416,361 - +2.3 416,361 - +0.7 416,391 + -0.1 416,392 - +1.0 416,407 + +1.8 416,407 + +0.1 416,407 + -0.2 416,408 - +1.5 416,411 + +2.5 416,419 + +0.1 416,448 + +1.0 416,451 + +0.9 416,451 + +1.6 416,451 + +1.4 416,451 + -2.0 416,451 + -1.9 416,460 + +1.9 416,475 - +1.4 416,482 - -0.6 416,521 + HMPREF1078_RS14590 0.16 -2.0 416,522 - HMPREF1078_RS14590 0.17 -0.2 416,597 + HMPREF1078_RS14590 0.53 -4.6 416,603 + HMPREF1078_RS14590 0.56 -0.9 416,603 + HMPREF1078_RS14590 0.56 +0.7 416,617 + HMPREF1078_RS14590 0.63 -1.3 416,620 - HMPREF1078_RS14590 0.65 +1.2 416,620 - HMPREF1078_RS14590 0.65 -0.6 416,625 + HMPREF1078_RS14590 0.67 -0.9 416,626 - HMPREF1078_RS14590 0.68 +0.5 416,634 + HMPREF1078_RS14590 0.72 -0.6 416,635 - HMPREF1078_RS14590 0.72 +0.7 416,662 + HMPREF1078_RS14590 0.85 +0.1 416,663 - HMPREF1078_RS14590 0.86 -1.1 416,663 - HMPREF1078_RS14590 0.86 +0.7 416,663 - HMPREF1078_RS14590 0.86 +0.2 416,668 + HMPREF1078_RS14590 0.88 -1.4 416,669 - HMPREF1078_RS14590 0.89 +0.7 416,690 - +1.2 416,690 - +0.9 416,757 + HMPREF1078_RS14595 0.21 -2.7 416,768 - HMPREF1078_RS14595 0.25 -0.3 416,768 - HMPREF1078_RS14595 0.25 +0.2 416,770 - HMPREF1078_RS14595 0.25 +1.3 416,872 - HMPREF1078_RS14595 0.57 -0.2 416,901 + HMPREF1078_RS14595 0.66 +0.7 416,902 - HMPREF1078_RS14595 0.66 -0.9 416,921 + HMPREF1078_RS14595 0.72 -0.6 416,922 - HMPREF1078_RS14595 0.72 +1.2 416,935 + HMPREF1078_RS14595 0.76 -2.5 416,936 - HMPREF1078_RS14595 0.77 +2.2 416,982 + +0.6 416,983 - -1.2 416,985 + +1.0 416,985 + +0.7 416,985 + +1.8 416,985 + +2.1 416,985 + -1.8 416,986 - -1.3 416,989 + +0.0 416,989 + -0.6 416,989 + +1.4 416,989 + +1.1 416,989 + -1.9 416,989 + +0.5 416,990 - +0.1 416,990 - -2.0 417,011 + -2.2 417,012 - -1.3 417,013 + -0.6 417,013 + +0.6 417,014 - -0.6 417,014 - +1.3 417,014 - -1.8 417,014 - +2.5 417,014 - -0.9 417,014 - -0.5 417,028 - +1.5 417,031 + -0.1 417,058 + -1.7 417,059 - -0.9 417,091 + +0.7 417,139 + -1.5 417,139 + -1.5 417,139 + -0.3 417,141 + -1.6 417,141 + +0.2 417,141 + -3.7 417,141 + +1.6 417,141 + -2.3 417,141 + +1.2 417,141 + -0.1 417,141 + -1.8 417,141 + +0.7 417,141 + -1.2 417,141 + -1.3 417,141 + +0.6 417,141 + -1.0 417,142 - -2.4 417,142 - +1.9 417,142 - -2.3 417,142 - -2.6 417,142 - -1.3 417,145 + -0.0 417,145 + +0.9 417,145 + +1.8 417,145 + -3.5 417,145 + -2.2 417,145 + -0.4 417,145 + +0.4 417,145 + -0.9 417,145 + +1.4 417,145 + -0.3 417,145 + +1.2 417,145 + +1.4 417,145 + +0.4 417,145 + +0.3 417,145 + -0.9 417,146 - +1.9 417,146 - +0.2 417,146 - +0.8 417,146 - +1.0 417,146 - -2.8 417,146 - -1.8 417,146 - -1.4 417,146 - -2.7 417,146 - +1.7 417,146 - +2.1 417,147 + -2.3 417,147 + -1.7 417,147 + +1.2 417,147 + -1.4 417,147 + +1.2 417,147 + +0.3 417,148 - -1.8 417,148 - -0.8 417,148 - -0.9 417,148 - -1.0 417,148 - -0.1 417,148 - -0.5 417,178 + +0.1 417,178 + +1.6 417,179 - -3.4 417,180 + -0.9 417,181 - -0.3 417,181 - -0.7 417,181 - +1.9 417,212 + -0.4 417,212 + -1.0 417,212 + +1.2 417,213 - +0.5 417,243 + -0.1 417,244 - -0.6 417,244 - -1.5 417,244 - +0.7 417,247 + +2.7 417,247 + +0.3 417,248 - +1.2 417,248 - +0.1 417,369 + HMPREF1078_RS14600 0.88 -3.3 417,499 - +0.5 418,060 - -0.1 418,060 - -2.2 418,062 - -2.2 418,062 - +2.5 418,062 - -2.5 418,062 - -0.1 418,068 - -1.0 418,068 - -0.9 418,068 - -1.7 418,070 - -0.3 418,080 - +1.0 418,080 - +0.2 418,080 - -2.2 418,080 - -0.9 418,082 - -2.3 418,082 - -1.7 418,082 - +2.2 418,082 - +1.2 418,082 - -0.8 418,082 - -1.2 418,082 - -1.8 418,087 - -0.4 418,087 - -0.3 418,087 - +0.2 418,087 - -1.1 418,115 - -0.9 418,115 - -1.6 418,115 - +1.2 418,117 - -2.1 418,117 - +0.7 418,117 - -0.6 418,174 - HMPREF1078_RS14615 0.13 +1.2 418,320 - HMPREF1078_RS14615 0.34 +0.7 418,324 - HMPREF1078_RS14615 0.35 -1.5 418,324 - HMPREF1078_RS14615 0.35 -0.1 418,324 - HMPREF1078_RS14615 0.35 -0.6
Or see this region's nucleotide sequence