Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS14505

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS14495 and HMPREF1078_RS14500 are separated by 75 nucleotidesHMPREF1078_RS14500 and HMPREF1078_RS14505 overlap by 14 nucleotidesHMPREF1078_RS14505 and HMPREF1078_RS14510 are separated by 29 nucleotides HMPREF1078_RS14495: HMPREF1078_RS14495 - glycoside hydrolase family 2 TIM barrel-domain containing protein, at 394,180 to 398,201 _RS14495 HMPREF1078_RS14500: HMPREF1078_RS14500 - type III pantothenate kinase, at 398,277 to 399,056 _RS14500 HMPREF1078_RS14505: HMPREF1078_RS14505 - hypothetical protein, at 399,043 to 400,332 _RS14505 HMPREF1078_RS14510: HMPREF1078_RS14510 - tetratricopeptide repeat protein, at 400,362 to 401,726 _RS14510 Position (kb) 399 400 401Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 398.121 kb on + strandat 398.199 kb on + strandat 398.199 kb on + strandat 398.210 kb on + strandat 398.212 kb on + strandat 398.215 kb on + strandat 398.216 kb on - strandat 398.276 kb on + strandat 398.277 kb on - strandat 398.281 kb on - strandat 398.339 kb on + strandat 398.374 kb on + strand, within HMPREF1078_RS14500at 398.376 kb on + strand, within HMPREF1078_RS14500at 398.376 kb on + strand, within HMPREF1078_RS14500at 398.376 kb on + strand, within HMPREF1078_RS14500at 398.377 kb on - strand, within HMPREF1078_RS14500at 398.377 kb on - strand, within HMPREF1078_RS14500at 398.377 kb on - strand, within HMPREF1078_RS14500at 398.377 kb on - strand, within HMPREF1078_RS14500at 398.377 kb on - strand, within HMPREF1078_RS14500at 398.377 kb on - strand, within HMPREF1078_RS14500at 398.377 kb on - strand, within HMPREF1078_RS14500at 398.381 kb on + strand, within HMPREF1078_RS14500at 398.382 kb on - strand, within HMPREF1078_RS14500at 398.441 kb on + strand, within HMPREF1078_RS14500at 398.441 kb on + strand, within HMPREF1078_RS14500at 398.455 kb on - strand, within HMPREF1078_RS14500at 398.473 kb on + strand, within HMPREF1078_RS14500at 398.488 kb on + strand, within HMPREF1078_RS14500at 398.488 kb on + strand, within HMPREF1078_RS14500at 398.489 kb on - strand, within HMPREF1078_RS14500at 398.492 kb on + strand, within HMPREF1078_RS14500at 398.492 kb on + strand, within HMPREF1078_RS14500at 398.492 kb on + strand, within HMPREF1078_RS14500at 398.493 kb on - strand, within HMPREF1078_RS14500at 398.514 kb on + strand, within HMPREF1078_RS14500at 398.514 kb on + strand, within HMPREF1078_RS14500at 398.515 kb on - strand, within HMPREF1078_RS14500at 398.515 kb on - strand, within HMPREF1078_RS14500at 398.561 kb on - strand, within HMPREF1078_RS14500at 398.583 kb on + strand, within HMPREF1078_RS14500at 398.584 kb on - strand, within HMPREF1078_RS14500at 398.585 kb on + strand, within HMPREF1078_RS14500at 398.603 kb on - strand, within HMPREF1078_RS14500at 398.640 kb on + strand, within HMPREF1078_RS14500at 398.687 kb on + strand, within HMPREF1078_RS14500at 398.687 kb on + strand, within HMPREF1078_RS14500at 398.688 kb on - strand, within HMPREF1078_RS14500at 398.690 kb on + strand, within HMPREF1078_RS14500at 398.690 kb on + strand, within HMPREF1078_RS14500at 398.690 kb on + strand, within HMPREF1078_RS14500at 398.691 kb on - strand, within HMPREF1078_RS14500at 398.691 kb on - strand, within HMPREF1078_RS14500at 398.691 kb on - strand, within HMPREF1078_RS14500at 398.691 kb on - strand, within HMPREF1078_RS14500at 398.691 kb on - strand, within HMPREF1078_RS14500at 398.691 kb on - strand, within HMPREF1078_RS14500at 398.694 kb on + strand, within HMPREF1078_RS14500at 398.694 kb on + strand, within HMPREF1078_RS14500at 398.695 kb on - strand, within HMPREF1078_RS14500at 398.695 kb on - strand, within HMPREF1078_RS14500at 398.736 kb on - strand, within HMPREF1078_RS14500at 398.814 kb on + strand, within HMPREF1078_RS14500at 398.814 kb on + strand, within HMPREF1078_RS14500at 398.815 kb on - strand, within HMPREF1078_RS14500at 398.815 kb on - strand, within HMPREF1078_RS14500at 398.864 kb on - strand, within HMPREF1078_RS14500at 398.866 kb on + strand, within HMPREF1078_RS14500at 398.866 kb on + strand, within HMPREF1078_RS14500at 398.873 kb on + strand, within HMPREF1078_RS14500at 398.873 kb on + strand, within HMPREF1078_RS14500at 398.875 kb on + strand, within HMPREF1078_RS14500at 398.875 kb on + strand, within HMPREF1078_RS14500at 398.875 kb on + strand, within HMPREF1078_RS14500at 398.895 kb on + strand, within HMPREF1078_RS14500at 398.895 kb on + strand, within HMPREF1078_RS14500at 398.896 kb on - strand, within HMPREF1078_RS14500at 398.896 kb on - strand, within HMPREF1078_RS14500at 398.896 kb on - strand, within HMPREF1078_RS14500at 398.898 kb on - strand, within HMPREF1078_RS14500at 398.914 kb on + strand, within HMPREF1078_RS14500at 398.919 kb on + strand, within HMPREF1078_RS14500at 398.919 kb on + strand, within HMPREF1078_RS14500at 398.920 kb on - strand, within HMPREF1078_RS14500at 399.022 kb on + strandat 399.035 kb on - strandat 399.041 kb on + strandat 399.065 kb on + strandat 399.082 kb on - strandat 399.083 kb on + strandat 399.117 kb on + strandat 399.117 kb on + strandat 399.227 kb on + strand, within HMPREF1078_RS14505at 399.250 kb on + strand, within HMPREF1078_RS14505at 399.250 kb on + strand, within HMPREF1078_RS14505at 399.250 kb on + strand, within HMPREF1078_RS14505at 399.250 kb on + strand, within HMPREF1078_RS14505at 399.361 kb on + strand, within HMPREF1078_RS14505at 399.361 kb on + strand, within HMPREF1078_RS14505at 399.361 kb on + strand, within HMPREF1078_RS14505at 399.427 kb on + strand, within HMPREF1078_RS14505at 399.427 kb on + strand, within HMPREF1078_RS14505at 399.427 kb on + strand, within HMPREF1078_RS14505at 399.436 kb on + strand, within HMPREF1078_RS14505at 399.438 kb on + strand, within HMPREF1078_RS14505at 399.471 kb on + strand, within HMPREF1078_RS14505at 399.517 kb on + strand, within HMPREF1078_RS14505at 399.537 kb on + strand, within HMPREF1078_RS14505at 399.591 kb on + strand, within HMPREF1078_RS14505at 399.591 kb on + strand, within HMPREF1078_RS14505at 399.611 kb on + strand, within HMPREF1078_RS14505at 399.611 kb on + strand, within HMPREF1078_RS14505at 399.640 kb on + strand, within HMPREF1078_RS14505at 399.640 kb on + strand, within HMPREF1078_RS14505at 399.640 kb on + strand, within HMPREF1078_RS14505at 399.640 kb on + strand, within HMPREF1078_RS14505at 399.640 kb on + strand, within HMPREF1078_RS14505at 399.640 kb on + strand, within HMPREF1078_RS14505at 399.642 kb on + strand, within HMPREF1078_RS14505at 399.642 kb on + strand, within HMPREF1078_RS14505at 399.642 kb on + strand, within HMPREF1078_RS14505at 399.645 kb on + strand, within HMPREF1078_RS14505at 399.645 kb on + strand, within HMPREF1078_RS14505at 399.704 kb on - strand, within HMPREF1078_RS14505at 399.711 kb on + strand, within HMPREF1078_RS14505at 399.740 kb on + strand, within HMPREF1078_RS14505at 399.740 kb on + strand, within HMPREF1078_RS14505at 399.741 kb on - strand, within HMPREF1078_RS14505at 399.784 kb on + strand, within HMPREF1078_RS14505at 399.784 kb on + strand, within HMPREF1078_RS14505at 399.803 kb on - strand, within HMPREF1078_RS14505at 399.804 kb on + strand, within HMPREF1078_RS14505at 399.804 kb on + strand, within HMPREF1078_RS14505at 399.804 kb on + strand, within HMPREF1078_RS14505at 399.843 kb on + strand, within HMPREF1078_RS14505at 399.843 kb on + strand, within HMPREF1078_RS14505at 399.873 kb on + strand, within HMPREF1078_RS14505at 399.898 kb on + strand, within HMPREF1078_RS14505at 399.923 kb on + strand, within HMPREF1078_RS14505at 400.021 kb on + strand, within HMPREF1078_RS14505at 400.021 kb on + strand, within HMPREF1078_RS14505at 400.021 kb on + strand, within HMPREF1078_RS14505at 400.021 kb on + strand, within HMPREF1078_RS14505at 400.023 kb on + strand, within HMPREF1078_RS14505at 400.023 kb on + strand, within HMPREF1078_RS14505at 400.023 kb on + strand, within HMPREF1078_RS14505at 400.023 kb on + strand, within HMPREF1078_RS14505at 400.033 kb on + strand, within HMPREF1078_RS14505at 400.041 kb on + strand, within HMPREF1078_RS14505at 400.041 kb on + strand, within HMPREF1078_RS14505at 400.104 kb on + strand, within HMPREF1078_RS14505at 400.141 kb on + strand, within HMPREF1078_RS14505at 400.143 kb on + strand, within HMPREF1078_RS14505at 400.143 kb on + strand, within HMPREF1078_RS14505at 400.181 kb on + strand, within HMPREF1078_RS14505at 400.267 kb on + strandat 400.290 kb on + strandat 400.290 kb on + strandat 400.351 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3
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398,121 + +1.1
398,199 + +0.3
398,199 + +2.8
398,210 + +1.9
398,212 + +3.3
398,215 + -0.0
398,216 - -1.7
398,276 + +0.9
398,277 - -0.9
398,281 - -1.2
398,339 + -1.5
398,374 + HMPREF1078_RS14500 0.12 +1.5
398,376 + HMPREF1078_RS14500 0.13 +1.1
398,376 + HMPREF1078_RS14500 0.13 -4.5
398,376 + HMPREF1078_RS14500 0.13 -1.9
398,377 - HMPREF1078_RS14500 0.13 -0.9
398,377 - HMPREF1078_RS14500 0.13 +1.6
398,377 - HMPREF1078_RS14500 0.13 -1.8
398,377 - HMPREF1078_RS14500 0.13 -0.8
398,377 - HMPREF1078_RS14500 0.13 -2.0
398,377 - HMPREF1078_RS14500 0.13 +2.6
398,377 - HMPREF1078_RS14500 0.13 +0.2
398,381 + HMPREF1078_RS14500 0.13 -0.8
398,382 - HMPREF1078_RS14500 0.13 +1.6
398,441 + HMPREF1078_RS14500 0.21 -0.6
398,441 + HMPREF1078_RS14500 0.21 +0.1
398,455 - HMPREF1078_RS14500 0.23 -1.4
398,473 + HMPREF1078_RS14500 0.25 +1.2
398,488 + HMPREF1078_RS14500 0.27 -1.8
398,488 + HMPREF1078_RS14500 0.27 -0.8
398,489 - HMPREF1078_RS14500 0.27 -0.4
398,492 + HMPREF1078_RS14500 0.28 +0.3
398,492 + HMPREF1078_RS14500 0.28 +0.1
398,492 + HMPREF1078_RS14500 0.28 -2.5
398,493 - HMPREF1078_RS14500 0.28 +0.6
398,514 + HMPREF1078_RS14500 0.30 +0.5
398,514 + HMPREF1078_RS14500 0.30 -2.9
398,515 - HMPREF1078_RS14500 0.31 -0.9
398,515 - HMPREF1078_RS14500 0.31 +2.2
398,561 - HMPREF1078_RS14500 0.36 +1.4
398,583 + HMPREF1078_RS14500 0.39 -1.1
398,584 - HMPREF1078_RS14500 0.39 +0.3
398,585 + HMPREF1078_RS14500 0.39 -0.3
398,603 - HMPREF1078_RS14500 0.42 -3.9
398,640 + HMPREF1078_RS14500 0.47 +1.1
398,687 + HMPREF1078_RS14500 0.53 +1.6
398,687 + HMPREF1078_RS14500 0.53 -2.7
398,688 - HMPREF1078_RS14500 0.53 -0.3
398,690 + HMPREF1078_RS14500 0.53 +1.0
398,690 + HMPREF1078_RS14500 0.53 -0.2
398,690 + HMPREF1078_RS14500 0.53 -0.8
398,691 - HMPREF1078_RS14500 0.53 +0.9
398,691 - HMPREF1078_RS14500 0.53 -3.7
398,691 - HMPREF1078_RS14500 0.53 -3.3
398,691 - HMPREF1078_RS14500 0.53 -1.1
398,691 - HMPREF1078_RS14500 0.53 -1.1
398,691 - HMPREF1078_RS14500 0.53 -1.7
398,694 + HMPREF1078_RS14500 0.53 -1.9
398,694 + HMPREF1078_RS14500 0.53 -0.1
398,695 - HMPREF1078_RS14500 0.54 -3.2
398,695 - HMPREF1078_RS14500 0.54 -1.1
398,736 - HMPREF1078_RS14500 0.59 +1.0
398,814 + HMPREF1078_RS14500 0.69 +0.7
398,814 + HMPREF1078_RS14500 0.69 -2.3
398,815 - HMPREF1078_RS14500 0.69 +0.4
398,815 - HMPREF1078_RS14500 0.69 +2.9
398,864 - HMPREF1078_RS14500 0.75 -0.2
398,866 + HMPREF1078_RS14500 0.76 -1.8
398,866 + HMPREF1078_RS14500 0.76 -1.7
398,873 + HMPREF1078_RS14500 0.76 +2.0
398,873 + HMPREF1078_RS14500 0.76 +0.1
398,875 + HMPREF1078_RS14500 0.77 -2.7
398,875 + HMPREF1078_RS14500 0.77 -2.3
398,875 + HMPREF1078_RS14500 0.77 +1.6
398,895 + HMPREF1078_RS14500 0.79 -2.7
398,895 + HMPREF1078_RS14500 0.79 -1.2
398,896 - HMPREF1078_RS14500 0.79 -0.8
398,896 - HMPREF1078_RS14500 0.79 +0.1
398,896 - HMPREF1078_RS14500 0.79 +0.2
398,898 - HMPREF1078_RS14500 0.80 -0.3
398,914 + HMPREF1078_RS14500 0.82 -1.1
398,919 + HMPREF1078_RS14500 0.82 +1.0
398,919 + HMPREF1078_RS14500 0.82 -2.7
398,920 - HMPREF1078_RS14500 0.82 -4.3
399,022 + -3.9
399,035 - +0.7
399,041 + -5.0
399,065 + -4.9
399,082 - -1.5
399,083 + -4.2
399,117 + -3.5
399,117 + -4.0
399,227 + HMPREF1078_RS14505 0.14 -5.6
399,250 + HMPREF1078_RS14505 0.16 -1.6
399,250 + HMPREF1078_RS14505 0.16 -4.4
399,250 + HMPREF1078_RS14505 0.16 -4.9
399,250 + HMPREF1078_RS14505 0.16 -5.1
399,361 + HMPREF1078_RS14505 0.25 -3.6
399,361 + HMPREF1078_RS14505 0.25 -1.3
399,361 + HMPREF1078_RS14505 0.25 -5.1
399,427 + HMPREF1078_RS14505 0.30 -0.8
399,427 + HMPREF1078_RS14505 0.30 -4.9
399,427 + HMPREF1078_RS14505 0.30 -3.6
399,436 + HMPREF1078_RS14505 0.30 -3.4
399,438 + HMPREF1078_RS14505 0.31 -6.4
399,471 + HMPREF1078_RS14505 0.33 -5.4
399,517 + HMPREF1078_RS14505 0.37 -1.5
399,537 + HMPREF1078_RS14505 0.38 -3.5
399,591 + HMPREF1078_RS14505 0.42 -5.1
399,591 + HMPREF1078_RS14505 0.42 -4.6
399,611 + HMPREF1078_RS14505 0.44 -4.2
399,611 + HMPREF1078_RS14505 0.44 -3.1
399,640 + HMPREF1078_RS14505 0.46 -2.3
399,640 + HMPREF1078_RS14505 0.46 -4.2
399,640 + HMPREF1078_RS14505 0.46 -3.0
399,640 + HMPREF1078_RS14505 0.46 -3.0
399,640 + HMPREF1078_RS14505 0.46 -4.0
399,640 + HMPREF1078_RS14505 0.46 -5.7
399,642 + HMPREF1078_RS14505 0.46 -4.9
399,642 + HMPREF1078_RS14505 0.46 -3.3
399,642 + HMPREF1078_RS14505 0.46 -3.8
399,645 + HMPREF1078_RS14505 0.47 -5.4
399,645 + HMPREF1078_RS14505 0.47 -5.3
399,704 - HMPREF1078_RS14505 0.51 -0.1
399,711 + HMPREF1078_RS14505 0.52 -5.0
399,740 + HMPREF1078_RS14505 0.54 -4.5
399,740 + HMPREF1078_RS14505 0.54 -5.6
399,741 - HMPREF1078_RS14505 0.54 -0.8
399,784 + HMPREF1078_RS14505 0.57 -3.7
399,784 + HMPREF1078_RS14505 0.57 -5.0
399,803 - HMPREF1078_RS14505 0.59 -0.6
399,804 + HMPREF1078_RS14505 0.59 -3.8
399,804 + HMPREF1078_RS14505 0.59 -1.1
399,804 + HMPREF1078_RS14505 0.59 -2.1
399,843 + HMPREF1078_RS14505 0.62 -5.2
399,843 + HMPREF1078_RS14505 0.62 -5.1
399,873 + HMPREF1078_RS14505 0.64 -2.6
399,898 + HMPREF1078_RS14505 0.66 -5.3
399,923 + HMPREF1078_RS14505 0.68 -5.3
400,021 + HMPREF1078_RS14505 0.76 -2.6
400,021 + HMPREF1078_RS14505 0.76 -4.8
400,021 + HMPREF1078_RS14505 0.76 -4.7
400,021 + HMPREF1078_RS14505 0.76 -2.7
400,023 + HMPREF1078_RS14505 0.76 -3.3
400,023 + HMPREF1078_RS14505 0.76 -4.0
400,023 + HMPREF1078_RS14505 0.76 -4.2
400,023 + HMPREF1078_RS14505 0.76 -5.0
400,033 + HMPREF1078_RS14505 0.77 -2.5
400,041 + HMPREF1078_RS14505 0.77 -4.9
400,041 + HMPREF1078_RS14505 0.77 -3.8
400,104 + HMPREF1078_RS14505 0.82 -5.3
400,141 + HMPREF1078_RS14505 0.85 -5.5
400,143 + HMPREF1078_RS14505 0.85 -2.1
400,143 + HMPREF1078_RS14505 0.85 -5.8
400,181 + HMPREF1078_RS14505 0.88 -4.5
400,267 + -3.3
400,290 + -6.0
400,290 + -4.0
400,351 + -3.5

Or see this region's nucleotide sequence