Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS14280 and HMPREF1078_RS14285 are separated by 85 nucleotides HMPREF1078_RS14285 and HMPREF1078_RS14290 are separated by 219 nucleotides
HMPREF1078_RS14280: HMPREF1078_RS14280 - alkaline phosphatase family protein, at 333,754 to 334,701
_RS14280
HMPREF1078_RS14285: HMPREF1078_RS14285 - IMP dehydrogenase, at 334,787 to 336,280
_RS14285
HMPREF1078_RS14290: HMPREF1078_RS14290 - pirin family protein, at 336,500 to 337,207
_RS14290
Position (kb) 334
335
336
337 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 333.809 kb on + strand at 333.903 kb on + strand, within HMPREF1078_RS14280 at 333.903 kb on + strand, within HMPREF1078_RS14280 at 333.904 kb on - strand, within HMPREF1078_RS14280 at 333.993 kb on + strand, within HMPREF1078_RS14280 at 334.111 kb on - strand, within HMPREF1078_RS14280 at 334.127 kb on - strand, within HMPREF1078_RS14280 at 334.127 kb on - strand, within HMPREF1078_RS14280 at 334.216 kb on + strand, within HMPREF1078_RS14280 at 334.218 kb on + strand, within HMPREF1078_RS14280 at 334.246 kb on + strand, within HMPREF1078_RS14280 at 334.264 kb on + strand, within HMPREF1078_RS14280 at 334.264 kb on + strand, within HMPREF1078_RS14280 at 334.265 kb on - strand, within HMPREF1078_RS14280 at 334.265 kb on - strand, within HMPREF1078_RS14280 at 334.328 kb on + strand, within HMPREF1078_RS14280 at 334.371 kb on + strand, within HMPREF1078_RS14280 at 334.371 kb on + strand, within HMPREF1078_RS14280 at 334.392 kb on + strand, within HMPREF1078_RS14280 at 334.392 kb on + strand, within HMPREF1078_RS14280 at 334.392 kb on + strand, within HMPREF1078_RS14280 at 334.393 kb on - strand, within HMPREF1078_RS14280 at 334.463 kb on - strand, within HMPREF1078_RS14280 at 334.463 kb on - strand, within HMPREF1078_RS14280 at 334.463 kb on - strand, within HMPREF1078_RS14280 at 334.464 kb on + strand, within HMPREF1078_RS14280 at 334.464 kb on + strand, within HMPREF1078_RS14280 at 334.465 kb on - strand, within HMPREF1078_RS14280 at 334.465 kb on - strand, within HMPREF1078_RS14280 at 334.531 kb on - strand, within HMPREF1078_RS14280 at 334.575 kb on - strand, within HMPREF1078_RS14280 at 334.617 kb on + strand at 334.626 kb on + strand at 334.626 kb on + strand at 334.627 kb on - strand at 334.627 kb on - strand at 334.679 kb on + strand at 334.680 kb on - strand at 334.682 kb on + strand at 334.683 kb on - strand at 334.683 kb on - strand at 334.683 kb on - strand at 334.692 kb on - strand at 334.699 kb on + strand at 334.706 kb on + strand at 334.707 kb on - strand at 334.717 kb on - strand at 334.726 kb on + strand at 334.738 kb on - strand at 334.766 kb on + strand at 334.776 kb on + strand at 334.891 kb on + strand at 334.891 kb on + strand at 334.966 kb on - strand, within HMPREF1078_RS14285 at 334.974 kb on + strand, within HMPREF1078_RS14285 at 334.974 kb on + strand, within HMPREF1078_RS14285 at 334.975 kb on - strand, within HMPREF1078_RS14285 at 334.975 kb on - strand, within HMPREF1078_RS14285 at 334.975 kb on - strand, within HMPREF1078_RS14285 at 334.975 kb on - strand, within HMPREF1078_RS14285 at 334.975 kb on - strand, within HMPREF1078_RS14285 at 334.975 kb on - strand, within HMPREF1078_RS14285 at 335.000 kb on - strand, within HMPREF1078_RS14285 at 335.087 kb on - strand, within HMPREF1078_RS14285 at 335.134 kb on - strand, within HMPREF1078_RS14285 at 335.134 kb on - strand, within HMPREF1078_RS14285 at 335.187 kb on + strand, within HMPREF1078_RS14285 at 335.188 kb on - strand, within HMPREF1078_RS14285 at 335.226 kb on + strand, within HMPREF1078_RS14285 at 335.226 kb on + strand, within HMPREF1078_RS14285 at 335.227 kb on - strand, within HMPREF1078_RS14285 at 335.227 kb on - strand, within HMPREF1078_RS14285 at 335.227 kb on - strand, within HMPREF1078_RS14285 at 335.230 kb on + strand, within HMPREF1078_RS14285 at 335.230 kb on + strand, within HMPREF1078_RS14285 at 335.230 kb on + strand, within HMPREF1078_RS14285 at 335.231 kb on - strand, within HMPREF1078_RS14285 at 335.511 kb on - strand, within HMPREF1078_RS14285 at 335.511 kb on - strand, within HMPREF1078_RS14285 at 335.511 kb on - strand, within HMPREF1078_RS14285 at 335.551 kb on + strand, within HMPREF1078_RS14285 at 335.554 kb on - strand, within HMPREF1078_RS14285 at 335.580 kb on - strand, within HMPREF1078_RS14285 at 335.613 kb on + strand, within HMPREF1078_RS14285 at 335.658 kb on + strand, within HMPREF1078_RS14285 at 335.894 kb on - strand, within HMPREF1078_RS14285 at 335.912 kb on + strand, within HMPREF1078_RS14285 at 335.924 kb on + strand, within HMPREF1078_RS14285 at 336.025 kb on + strand, within HMPREF1078_RS14285 at 336.218 kb on + strand at 336.237 kb on + strand at 336.257 kb on + strand at 336.257 kb on + strand at 336.258 kb on - strand at 336.258 kb on - strand at 336.258 kb on - strand at 336.288 kb on - strand at 336.289 kb on + strand at 336.307 kb on - strand at 336.337 kb on + strand at 336.337 kb on + strand at 336.337 kb on + strand at 336.345 kb on - strand at 336.469 kb on + strand at 336.470 kb on - strand at 336.470 kb on - strand at 336.496 kb on - strand at 336.526 kb on - strand at 336.574 kb on + strand, within HMPREF1078_RS14290 at 336.588 kb on - strand, within HMPREF1078_RS14290 at 336.591 kb on - strand, within HMPREF1078_RS14290 at 336.667 kb on + strand, within HMPREF1078_RS14290 at 336.679 kb on + strand, within HMPREF1078_RS14290 at 336.679 kb on + strand, within HMPREF1078_RS14290 at 336.679 kb on + strand, within HMPREF1078_RS14290 at 336.821 kb on - strand, within HMPREF1078_RS14290 at 336.891 kb on - strand, within HMPREF1078_RS14290 at 336.892 kb on + strand, within HMPREF1078_RS14290 at 336.892 kb on + strand, within HMPREF1078_RS14290 at 336.893 kb on - strand, within HMPREF1078_RS14290 at 336.893 kb on - strand, within HMPREF1078_RS14290 at 336.899 kb on + strand, within HMPREF1078_RS14290 at 336.899 kb on + strand, within HMPREF1078_RS14290 at 336.899 kb on + strand, within HMPREF1078_RS14290 at 336.899 kb on + strand, within HMPREF1078_RS14290 at 336.900 kb on - strand, within HMPREF1078_RS14290 at 336.900 kb on - strand, within HMPREF1078_RS14290 at 337.003 kb on + strand, within HMPREF1078_RS14290 at 337.004 kb on - strand, within HMPREF1078_RS14290 at 337.031 kb on + strand, within HMPREF1078_RS14290 at 337.155 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 remove 333,809 + +3.0 333,903 + HMPREF1078_RS14280 0.16 -1.0 333,903 + HMPREF1078_RS14280 0.16 -1.1 333,904 - HMPREF1078_RS14280 0.16 -1.8 333,993 + HMPREF1078_RS14280 0.25 -0.2 334,111 - HMPREF1078_RS14280 0.38 -1.6 334,127 - HMPREF1078_RS14280 0.39 +1.4 334,127 - HMPREF1078_RS14280 0.39 -0.9 334,216 + HMPREF1078_RS14280 0.49 -2.2 334,218 + HMPREF1078_RS14280 0.49 +0.8 334,246 + HMPREF1078_RS14280 0.52 -3.5 334,264 + HMPREF1078_RS14280 0.54 +1.3 334,264 + HMPREF1078_RS14280 0.54 +0.2 334,265 - HMPREF1078_RS14280 0.54 -0.8 334,265 - HMPREF1078_RS14280 0.54 +2.7 334,328 + HMPREF1078_RS14280 0.61 -3.7 334,371 + HMPREF1078_RS14280 0.65 -1.4 334,371 + HMPREF1078_RS14280 0.65 -2.6 334,392 + HMPREF1078_RS14280 0.67 +1.4 334,392 + HMPREF1078_RS14280 0.67 +0.9 334,392 + HMPREF1078_RS14280 0.67 +2.0 334,393 - HMPREF1078_RS14280 0.67 -0.7 334,463 - HMPREF1078_RS14280 0.75 -2.4 334,463 - HMPREF1078_RS14280 0.75 -0.0 334,463 - HMPREF1078_RS14280 0.75 -1.2 334,464 + HMPREF1078_RS14280 0.75 +0.7 334,464 + HMPREF1078_RS14280 0.75 -0.3 334,465 - HMPREF1078_RS14280 0.75 -2.2 334,465 - HMPREF1078_RS14280 0.75 +1.3 334,531 - HMPREF1078_RS14280 0.82 +2.3 334,575 - HMPREF1078_RS14280 0.87 +1.7 334,617 + -0.2 334,626 + -2.6 334,626 + +1.2 334,627 - -1.8 334,627 - -0.2 334,679 + +0.3 334,680 - +1.4 334,682 + -0.6 334,683 - +0.8 334,683 - -1.0 334,683 - +2.1 334,692 - -3.7 334,699 + +0.5 334,706 + -0.3 334,707 - +3.2 334,717 - -1.1 334,726 + +0.5 334,738 - +1.5 334,766 + -3.6 334,776 + -0.9 334,891 + -2.7 334,891 + -0.8 334,966 - HMPREF1078_RS14285 0.12 -0.8 334,974 + HMPREF1078_RS14285 0.13 -3.6 334,974 + HMPREF1078_RS14285 0.13 -0.3 334,975 - HMPREF1078_RS14285 0.13 -2.2 334,975 - HMPREF1078_RS14285 0.13 -2.7 334,975 - HMPREF1078_RS14285 0.13 -1.7 334,975 - HMPREF1078_RS14285 0.13 +0.2 334,975 - HMPREF1078_RS14285 0.13 -1.7 334,975 - HMPREF1078_RS14285 0.13 -0.1 335,000 - HMPREF1078_RS14285 0.14 -1.6 335,087 - HMPREF1078_RS14285 0.20 -0.8 335,134 - HMPREF1078_RS14285 0.23 -0.9 335,134 - HMPREF1078_RS14285 0.23 -1.3 335,187 + HMPREF1078_RS14285 0.27 -0.9 335,188 - HMPREF1078_RS14285 0.27 -1.1 335,226 + HMPREF1078_RS14285 0.29 -0.1 335,226 + HMPREF1078_RS14285 0.29 +0.2 335,227 - HMPREF1078_RS14285 0.29 -2.2 335,227 - HMPREF1078_RS14285 0.29 -1.6 335,227 - HMPREF1078_RS14285 0.29 -1.2 335,230 + HMPREF1078_RS14285 0.30 -2.5 335,230 + HMPREF1078_RS14285 0.30 -1.7 335,230 + HMPREF1078_RS14285 0.30 -1.2 335,231 - HMPREF1078_RS14285 0.30 -0.6 335,511 - HMPREF1078_RS14285 0.48 -0.8 335,511 - HMPREF1078_RS14285 0.48 -0.3 335,511 - HMPREF1078_RS14285 0.48 -0.9 335,551 + HMPREF1078_RS14285 0.51 -2.7 335,554 - HMPREF1078_RS14285 0.51 -1.8 335,580 - HMPREF1078_RS14285 0.53 -2.6 335,613 + HMPREF1078_RS14285 0.55 -1.8 335,658 + HMPREF1078_RS14285 0.58 +0.7 335,894 - HMPREF1078_RS14285 0.74 +0.7 335,912 + HMPREF1078_RS14285 0.75 -0.9 335,924 + HMPREF1078_RS14285 0.76 -2.1 336,025 + HMPREF1078_RS14285 0.83 -0.8 336,218 + -1.2 336,237 + -0.9 336,257 + -2.8 336,257 + -1.7 336,258 - -2.8 336,258 - -0.3 336,258 - -0.6 336,288 - +0.7 336,289 + -0.3 336,307 - +0.8 336,337 + -1.8 336,337 + -4.2 336,337 + -1.1 336,345 - +1.3 336,469 + -0.2 336,470 - -0.6 336,470 - -2.3 336,496 - -3.1 336,526 - +0.5 336,574 + HMPREF1078_RS14290 0.10 -1.0 336,588 - HMPREF1078_RS14290 0.12 +1.5 336,591 - HMPREF1078_RS14290 0.13 -1.4 336,667 + HMPREF1078_RS14290 0.24 -3.2 336,679 + HMPREF1078_RS14290 0.25 -2.4 336,679 + HMPREF1078_RS14290 0.25 -0.4 336,679 + HMPREF1078_RS14290 0.25 -1.4 336,821 - HMPREF1078_RS14290 0.45 -0.0 336,891 - HMPREF1078_RS14290 0.55 -1.3 336,892 + HMPREF1078_RS14290 0.55 -1.9 336,892 + HMPREF1078_RS14290 0.55 +1.2 336,893 - HMPREF1078_RS14290 0.56 +1.2 336,893 - HMPREF1078_RS14290 0.56 -2.8 336,899 + HMPREF1078_RS14290 0.56 -0.6 336,899 + HMPREF1078_RS14290 0.56 -1.5 336,899 + HMPREF1078_RS14290 0.56 -3.7 336,899 + HMPREF1078_RS14290 0.56 +1.6 336,900 - HMPREF1078_RS14290 0.56 -0.9 336,900 - HMPREF1078_RS14290 0.56 -1.9 337,003 + HMPREF1078_RS14290 0.71 -0.3 337,004 - HMPREF1078_RS14290 0.71 -0.6 337,031 + HMPREF1078_RS14290 0.75 +1.6 337,155 + -0.3
Or see this region's nucleotide sequence