Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS14070 and HMPREF1078_RS14075 are separated by 107 nucleotides HMPREF1078_RS14075 and HMPREF1078_RS14080 are separated by 127 nucleotides HMPREF1078_RS14080 and HMPREF1078_RS14085 are separated by 10 nucleotides HMPREF1078_RS14085 and HMPREF1078_RS14090 are separated by 4 nucleotides
HMPREF1078_RS14070: HMPREF1078_RS14070 - alpha-glucan family phosphorylase, at 275,201 to 277,771
_RS14070
HMPREF1078_RS14075: HMPREF1078_RS14075 - glycosyltransferase, at 277,879 to 279,537
_RS14075
HMPREF1078_RS14080: HMPREF1078_RS14080 - hypothetical protein, at 279,665 to 279,949
_RS14080
HMPREF1078_RS14085: HMPREF1078_RS14085 - lysophospholipid acyltransferase family protein, at 279,960 to 280,505
_RS14085
HMPREF1078_RS14090: HMPREF1078_RS14090 - amidohydrolase, at 280,510 to 281,292
_RS14090
Position (kb) 277
278
279
280 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 276.952 kb on - strand, within HMPREF1078_RS14070 at 276.971 kb on + strand, within HMPREF1078_RS14070 at 277.048 kb on - strand, within HMPREF1078_RS14070 at 277.049 kb on + strand, within HMPREF1078_RS14070 at 277.049 kb on + strand, within HMPREF1078_RS14070 at 277.049 kb on + strand, within HMPREF1078_RS14070 at 277.049 kb on + strand, within HMPREF1078_RS14070 at 277.049 kb on + strand, within HMPREF1078_RS14070 at 277.049 kb on + strand, within HMPREF1078_RS14070 at 277.050 kb on - strand, within HMPREF1078_RS14070 at 277.050 kb on - strand, within HMPREF1078_RS14070 at 277.050 kb on - strand, within HMPREF1078_RS14070 at 277.050 kb on - strand, within HMPREF1078_RS14070 at 277.050 kb on - strand, within HMPREF1078_RS14070 at 277.093 kb on + strand, within HMPREF1078_RS14070 at 277.093 kb on + strand, within HMPREF1078_RS14070 at 277.093 kb on + strand, within HMPREF1078_RS14070 at 277.093 kb on + strand, within HMPREF1078_RS14070 at 277.094 kb on - strand, within HMPREF1078_RS14070 at 277.094 kb on - strand, within HMPREF1078_RS14070 at 277.094 kb on - strand, within HMPREF1078_RS14070 at 277.100 kb on - strand, within HMPREF1078_RS14070 at 277.111 kb on - strand, within HMPREF1078_RS14070 at 277.113 kb on - strand, within HMPREF1078_RS14070 at 277.133 kb on + strand, within HMPREF1078_RS14070 at 277.134 kb on - strand, within HMPREF1078_RS14070 at 277.153 kb on - strand, within HMPREF1078_RS14070 at 277.185 kb on - strand, within HMPREF1078_RS14070 at 277.219 kb on + strand, within HMPREF1078_RS14070 at 277.251 kb on + strand, within HMPREF1078_RS14070 at 277.277 kb on - strand, within HMPREF1078_RS14070 at 277.296 kb on + strand, within HMPREF1078_RS14070 at 277.309 kb on - strand, within HMPREF1078_RS14070 at 277.319 kb on + strand, within HMPREF1078_RS14070 at 277.320 kb on - strand, within HMPREF1078_RS14070 at 277.363 kb on - strand, within HMPREF1078_RS14070 at 277.377 kb on - strand, within HMPREF1078_RS14070 at 277.422 kb on + strand, within HMPREF1078_RS14070 at 277.422 kb on + strand, within HMPREF1078_RS14070 at 277.423 kb on - strand, within HMPREF1078_RS14070 at 277.468 kb on + strand, within HMPREF1078_RS14070 at 277.549 kb on + strand at 277.549 kb on + strand at 277.588 kb on + strand at 277.624 kb on + strand at 277.631 kb on + strand at 277.664 kb on + strand at 277.664 kb on + strand at 277.664 kb on + strand at 277.665 kb on - strand at 277.665 kb on - strand at 277.665 kb on - strand at 277.672 kb on + strand at 277.684 kb on - strand at 277.695 kb on - strand at 277.711 kb on + strand at 277.711 kb on + strand at 277.711 kb on + strand at 277.712 kb on - strand at 277.712 kb on - strand at 277.712 kb on - strand at 277.801 kb on + strand at 277.809 kb on + strand at 277.814 kb on + strand at 277.855 kb on + strand at 277.855 kb on + strand at 277.855 kb on + strand at 277.885 kb on - strand at 277.931 kb on + strand at 277.934 kb on + strand at 277.935 kb on - strand at 277.935 kb on - strand at 277.935 kb on - strand at 278.071 kb on - strand, within HMPREF1078_RS14075 at 278.071 kb on - strand, within HMPREF1078_RS14075 at 278.166 kb on + strand, within HMPREF1078_RS14075 at 278.207 kb on + strand, within HMPREF1078_RS14075 at 278.223 kb on - strand, within HMPREF1078_RS14075 at 278.225 kb on + strand, within HMPREF1078_RS14075 at 278.234 kb on + strand, within HMPREF1078_RS14075 at 278.268 kb on - strand, within HMPREF1078_RS14075 at 278.270 kb on + strand, within HMPREF1078_RS14075 at 278.306 kb on + strand, within HMPREF1078_RS14075 at 278.370 kb on + strand, within HMPREF1078_RS14075 at 278.370 kb on + strand, within HMPREF1078_RS14075 at 278.371 kb on - strand, within HMPREF1078_RS14075 at 278.371 kb on - strand, within HMPREF1078_RS14075 at 278.371 kb on - strand, within HMPREF1078_RS14075 at 278.371 kb on - strand, within HMPREF1078_RS14075 at 278.587 kb on - strand, within HMPREF1078_RS14075 at 278.587 kb on - strand, within HMPREF1078_RS14075 at 278.700 kb on + strand, within HMPREF1078_RS14075 at 278.715 kb on - strand, within HMPREF1078_RS14075 at 278.826 kb on + strand, within HMPREF1078_RS14075 at 278.859 kb on - strand, within HMPREF1078_RS14075 at 278.881 kb on - strand, within HMPREF1078_RS14075 at 278.913 kb on - strand, within HMPREF1078_RS14075 at 278.922 kb on + strand, within HMPREF1078_RS14075 at 278.922 kb on + strand, within HMPREF1078_RS14075 at 278.922 kb on + strand, within HMPREF1078_RS14075 at 278.923 kb on - strand, within HMPREF1078_RS14075 at 278.923 kb on - strand, within HMPREF1078_RS14075 at 278.923 kb on - strand, within HMPREF1078_RS14075 at 278.923 kb on - strand, within HMPREF1078_RS14075 at 278.924 kb on + strand, within HMPREF1078_RS14075 at 278.924 kb on + strand, within HMPREF1078_RS14075 at 278.924 kb on + strand, within HMPREF1078_RS14075 at 278.924 kb on + strand, within HMPREF1078_RS14075 at 278.924 kb on + strand, within HMPREF1078_RS14075 at 278.924 kb on + strand, within HMPREF1078_RS14075 at 278.924 kb on + strand, within HMPREF1078_RS14075 at 278.925 kb on - strand, within HMPREF1078_RS14075 at 278.925 kb on - strand, within HMPREF1078_RS14075 at 278.925 kb on - strand, within HMPREF1078_RS14075 at 278.925 kb on - strand, within HMPREF1078_RS14075 at 278.925 kb on - strand, within HMPREF1078_RS14075 at 278.925 kb on - strand, within HMPREF1078_RS14075 at 278.925 kb on - strand, within HMPREF1078_RS14075 at 278.930 kb on + strand, within HMPREF1078_RS14075 at 278.931 kb on - strand, within HMPREF1078_RS14075 at 279.024 kb on - strand, within HMPREF1078_RS14075 at 279.117 kb on + strand, within HMPREF1078_RS14075 at 279.117 kb on + strand, within HMPREF1078_RS14075 at 279.117 kb on + strand, within HMPREF1078_RS14075 at 279.118 kb on - strand, within HMPREF1078_RS14075 at 279.118 kb on - strand, within HMPREF1078_RS14075 at 279.118 kb on - strand, within HMPREF1078_RS14075 at 279.118 kb on - strand, within HMPREF1078_RS14075 at 279.118 kb on - strand, within HMPREF1078_RS14075 at 279.122 kb on - strand, within HMPREF1078_RS14075 at 279.138 kb on + strand, within HMPREF1078_RS14075 at 279.138 kb on + strand, within HMPREF1078_RS14075 at 279.161 kb on + strand, within HMPREF1078_RS14075 at 279.162 kb on - strand, within HMPREF1078_RS14075 at 279.247 kb on + strand, within HMPREF1078_RS14075 at 279.318 kb on + strand, within HMPREF1078_RS14075 at 279.400 kb on - strand at 279.411 kb on + strand at 279.418 kb on - strand at 279.435 kb on + strand at 279.461 kb on + strand at 279.462 kb on - strand at 279.466 kb on - strand at 279.477 kb on + strand at 279.480 kb on + strand at 279.484 kb on + strand at 279.484 kb on + strand at 279.485 kb on - strand at 279.485 kb on - strand at 279.510 kb on - strand at 279.528 kb on + strand at 279.528 kb on + strand at 279.551 kb on + strand at 279.630 kb on + strand at 279.646 kb on + strand at 279.664 kb on + strand at 279.665 kb on - strand at 279.739 kb on + strand, within HMPREF1078_RS14080 at 279.747 kb on - strand, within HMPREF1078_RS14080 at 279.795 kb on + strand, within HMPREF1078_RS14080 at 279.796 kb on - strand, within HMPREF1078_RS14080 at 279.802 kb on + strand, within HMPREF1078_RS14080 at 279.872 kb on + strand, within HMPREF1078_RS14080 at 279.876 kb on - strand, within HMPREF1078_RS14080 at 279.910 kb on - strand, within HMPREF1078_RS14080 at 279.919 kb on - strand, within HMPREF1078_RS14080 at 279.955 kb on - strand at 279.973 kb on + strand at 279.977 kb on + strand at 279.977 kb on + strand at 279.978 kb on - strand at 280.045 kb on + strand, within HMPREF1078_RS14085 at 280.046 kb on - strand, within HMPREF1078_RS14085 at 280.046 kb on - strand, within HMPREF1078_RS14085 at 280.046 kb on - strand, within HMPREF1078_RS14085 at 280.098 kb on + strand, within HMPREF1078_RS14085 at 280.098 kb on + strand, within HMPREF1078_RS14085 at 280.098 kb on + strand, within HMPREF1078_RS14085 at 280.365 kb on + strand, within HMPREF1078_RS14085 at 280.374 kb on + strand, within HMPREF1078_RS14085 at 280.405 kb on + strand, within HMPREF1078_RS14085 at 280.415 kb on + strand, within HMPREF1078_RS14085 at 280.437 kb on - strand, within HMPREF1078_RS14085 at 280.507 kb on - strand at 280.533 kb on + strand at 280.533 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 remove 276,952 - HMPREF1078_RS14070 0.68 -3.2 276,971 + HMPREF1078_RS14070 0.69 -5.0 277,048 - HMPREF1078_RS14070 0.72 -3.5 277,049 + HMPREF1078_RS14070 0.72 -2.2 277,049 + HMPREF1078_RS14070 0.72 -2.6 277,049 + HMPREF1078_RS14070 0.72 -3.8 277,049 + HMPREF1078_RS14070 0.72 -3.0 277,049 + HMPREF1078_RS14070 0.72 -2.0 277,049 + HMPREF1078_RS14070 0.72 -2.9 277,050 - HMPREF1078_RS14070 0.72 -2.9 277,050 - HMPREF1078_RS14070 0.72 -3.0 277,050 - HMPREF1078_RS14070 0.72 -4.5 277,050 - HMPREF1078_RS14070 0.72 -3.3 277,050 - HMPREF1078_RS14070 0.72 -4.0 277,093 + HMPREF1078_RS14070 0.74 -2.8 277,093 + HMPREF1078_RS14070 0.74 -2.8 277,093 + HMPREF1078_RS14070 0.74 -3.5 277,093 + HMPREF1078_RS14070 0.74 -4.1 277,094 - HMPREF1078_RS14070 0.74 -1.2 277,094 - HMPREF1078_RS14070 0.74 -0.9 277,094 - HMPREF1078_RS14070 0.74 -3.4 277,100 - HMPREF1078_RS14070 0.74 -5.1 277,111 - HMPREF1078_RS14070 0.74 -3.3 277,113 - HMPREF1078_RS14070 0.74 -3.5 277,133 + HMPREF1078_RS14070 0.75 -2.8 277,134 - HMPREF1078_RS14070 0.75 -3.7 277,153 - HMPREF1078_RS14070 0.76 -3.6 277,185 - HMPREF1078_RS14070 0.77 -4.1 277,219 + HMPREF1078_RS14070 0.78 +0.2 277,251 + HMPREF1078_RS14070 0.80 -3.6 277,277 - HMPREF1078_RS14070 0.81 -4.6 277,296 + HMPREF1078_RS14070 0.81 -0.8 277,309 - HMPREF1078_RS14070 0.82 -3.2 277,319 + HMPREF1078_RS14070 0.82 -3.0 277,320 - HMPREF1078_RS14070 0.82 -2.7 277,363 - HMPREF1078_RS14070 0.84 -2.4 277,377 - HMPREF1078_RS14070 0.85 -2.4 277,422 + HMPREF1078_RS14070 0.86 -3.8 277,422 + HMPREF1078_RS14070 0.86 -1.1 277,423 - HMPREF1078_RS14070 0.86 -1.8 277,468 + HMPREF1078_RS14070 0.88 -2.6 277,549 + -3.2 277,549 + -1.1 277,588 + -0.1 277,624 + -3.8 277,631 + -3.6 277,664 + -2.5 277,664 + -2.8 277,664 + -2.7 277,665 - -3.1 277,665 - -3.8 277,665 - -3.8 277,672 + -2.4 277,684 - -1.2 277,695 - -3.8 277,711 + -0.8 277,711 + -2.5 277,711 + -1.2 277,712 - -2.2 277,712 - -0.1 277,712 - -3.3 277,801 + -1.3 277,809 + -0.9 277,814 + -1.7 277,855 + +0.7 277,855 + -1.8 277,855 + +1.2 277,885 - -3.8 277,931 + -2.1 277,934 + -2.7 277,935 - -3.9 277,935 - -2.8 277,935 - -2.1 278,071 - HMPREF1078_RS14075 0.12 -3.0 278,071 - HMPREF1078_RS14075 0.12 -2.4 278,166 + HMPREF1078_RS14075 0.17 -4.0 278,207 + HMPREF1078_RS14075 0.20 -4.0 278,223 - HMPREF1078_RS14075 0.21 -2.0 278,225 + HMPREF1078_RS14075 0.21 -2.5 278,234 + HMPREF1078_RS14075 0.21 -2.2 278,268 - HMPREF1078_RS14075 0.23 -1.9 278,270 + HMPREF1078_RS14075 0.24 -2.2 278,306 + HMPREF1078_RS14075 0.26 -1.2 278,370 + HMPREF1078_RS14075 0.30 -4.0 278,370 + HMPREF1078_RS14075 0.30 -3.0 278,371 - HMPREF1078_RS14075 0.30 -3.0 278,371 - HMPREF1078_RS14075 0.30 -2.6 278,371 - HMPREF1078_RS14075 0.30 -0.7 278,371 - HMPREF1078_RS14075 0.30 -3.0 278,587 - HMPREF1078_RS14075 0.43 +1.2 278,587 - HMPREF1078_RS14075 0.43 -3.6 278,700 + HMPREF1078_RS14075 0.49 -2.7 278,715 - HMPREF1078_RS14075 0.50 -0.5 278,826 + HMPREF1078_RS14075 0.57 -2.3 278,859 - HMPREF1078_RS14075 0.59 -3.1 278,881 - HMPREF1078_RS14075 0.60 -3.2 278,913 - HMPREF1078_RS14075 0.62 -4.3 278,922 + HMPREF1078_RS14075 0.63 -0.9 278,922 + HMPREF1078_RS14075 0.63 -2.5 278,922 + HMPREF1078_RS14075 0.63 -2.8 278,923 - HMPREF1078_RS14075 0.63 -1.8 278,923 - HMPREF1078_RS14075 0.63 -3.2 278,923 - HMPREF1078_RS14075 0.63 -2.9 278,923 - HMPREF1078_RS14075 0.63 -3.1 278,924 + HMPREF1078_RS14075 0.63 -3.6 278,924 + HMPREF1078_RS14075 0.63 -2.6 278,924 + HMPREF1078_RS14075 0.63 -2.5 278,924 + HMPREF1078_RS14075 0.63 -0.6 278,924 + HMPREF1078_RS14075 0.63 -1.6 278,924 + HMPREF1078_RS14075 0.63 -3.5 278,924 + HMPREF1078_RS14075 0.63 +0.2 278,925 - HMPREF1078_RS14075 0.63 -2.4 278,925 - HMPREF1078_RS14075 0.63 -0.3 278,925 - HMPREF1078_RS14075 0.63 -0.8 278,925 - HMPREF1078_RS14075 0.63 -4.4 278,925 - HMPREF1078_RS14075 0.63 -1.5 278,925 - HMPREF1078_RS14075 0.63 -2.6 278,925 - HMPREF1078_RS14075 0.63 -1.3 278,930 + HMPREF1078_RS14075 0.63 -0.8 278,931 - HMPREF1078_RS14075 0.63 -0.9 279,024 - HMPREF1078_RS14075 0.69 -2.1 279,117 + HMPREF1078_RS14075 0.75 -1.8 279,117 + HMPREF1078_RS14075 0.75 -1.3 279,117 + HMPREF1078_RS14075 0.75 -2.9 279,118 - HMPREF1078_RS14075 0.75 -2.9 279,118 - HMPREF1078_RS14075 0.75 -2.2 279,118 - HMPREF1078_RS14075 0.75 -3.0 279,118 - HMPREF1078_RS14075 0.75 -1.5 279,118 - HMPREF1078_RS14075 0.75 -3.6 279,122 - HMPREF1078_RS14075 0.75 -1.8 279,138 + HMPREF1078_RS14075 0.76 -1.3 279,138 + HMPREF1078_RS14075 0.76 -2.1 279,161 + HMPREF1078_RS14075 0.77 -2.8 279,162 - HMPREF1078_RS14075 0.77 -2.3 279,247 + HMPREF1078_RS14075 0.82 -3.8 279,318 + HMPREF1078_RS14075 0.87 -3.8 279,400 - -1.0 279,411 + -2.3 279,418 - -2.6 279,435 + -3.2 279,461 + -3.8 279,462 - -2.6 279,466 - -0.8 279,477 + -3.4 279,480 + -3.7 279,484 + -1.5 279,484 + -2.0 279,485 - -1.6 279,485 - -2.6 279,510 - -2.5 279,528 + -1.8 279,528 + -4.0 279,551 + -2.2 279,630 + +0.6 279,646 + -1.3 279,664 + -2.5 279,665 - -2.4 279,739 + HMPREF1078_RS14080 0.26 -0.6 279,747 - HMPREF1078_RS14080 0.29 -0.3 279,795 + HMPREF1078_RS14080 0.46 +0.3 279,796 - HMPREF1078_RS14080 0.46 -1.1 279,802 + HMPREF1078_RS14080 0.48 +2.6 279,872 + HMPREF1078_RS14080 0.73 +0.3 279,876 - HMPREF1078_RS14080 0.74 -0.2 279,910 - HMPREF1078_RS14080 0.86 -2.6 279,919 - HMPREF1078_RS14080 0.89 -2.8 279,955 - -0.3 279,973 + -2.2 279,977 + -2.2 279,977 + -2.2 279,978 - +0.2 280,045 + HMPREF1078_RS14085 0.16 -2.3 280,046 - HMPREF1078_RS14085 0.16 -1.2 280,046 - HMPREF1078_RS14085 0.16 -0.8 280,046 - HMPREF1078_RS14085 0.16 -0.9 280,098 + HMPREF1078_RS14085 0.25 -1.7 280,098 + HMPREF1078_RS14085 0.25 -0.6 280,098 + HMPREF1078_RS14085 0.25 -2.3 280,365 + HMPREF1078_RS14085 0.74 -1.5 280,374 + HMPREF1078_RS14085 0.76 -0.1 280,405 + HMPREF1078_RS14085 0.82 -0.9 280,415 + HMPREF1078_RS14085 0.83 -2.4 280,437 - HMPREF1078_RS14085 0.87 -3.3 280,507 - +0.9 280,533 + +0.8 280,533 + -2.8
Or see this region's nucleotide sequence