Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS13440 and HMPREF1078_RS13445 are separated by 32 nucleotides HMPREF1078_RS13445 and HMPREF1078_RS13450 are separated by 274 nucleotides
HMPREF1078_RS13440: HMPREF1078_RS13440 - glycoside hydrolase family 2 TIM barrel-domain containing protein, at 127,903 to 131,001
_RS13440
HMPREF1078_RS13445: HMPREF1078_RS13445 - Gfo/Idh/MocA family oxidoreductase, at 131,034 to 132,200
_RS13445
HMPREF1078_RS13450: HMPREF1078_RS13450 - BT4734/BF3469 family protein, at 132,475 to 134,562
_RS13450
Position (kb) 131
132
133 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 130.070 kb on + strand, within HMPREF1078_RS13440 at 130.111 kb on + strand, within HMPREF1078_RS13440 at 130.179 kb on + strand, within HMPREF1078_RS13440 at 130.249 kb on - strand, within HMPREF1078_RS13440 at 130.250 kb on + strand, within HMPREF1078_RS13440 at 130.251 kb on - strand, within HMPREF1078_RS13440 at 130.316 kb on + strand, within HMPREF1078_RS13440 at 130.317 kb on - strand, within HMPREF1078_RS13440 at 130.428 kb on - strand, within HMPREF1078_RS13440 at 130.502 kb on + strand, within HMPREF1078_RS13440 at 130.503 kb on - strand, within HMPREF1078_RS13440 at 130.537 kb on + strand, within HMPREF1078_RS13440 at 130.537 kb on + strand, within HMPREF1078_RS13440 at 130.538 kb on - strand, within HMPREF1078_RS13440 at 130.591 kb on + strand, within HMPREF1078_RS13440 at 130.592 kb on - strand, within HMPREF1078_RS13440 at 130.668 kb on - strand, within HMPREF1078_RS13440 at 130.668 kb on - strand, within HMPREF1078_RS13440 at 130.770 kb on + strand at 130.770 kb on + strand at 130.839 kb on + strand at 130.840 kb on - strand at 130.840 kb on - strand at 130.840 kb on - strand at 130.921 kb on - strand at 130.987 kb on + strand at 130.987 kb on + strand at 130.987 kb on + strand at 131.002 kb on - strand at 131.013 kb on + strand at 131.058 kb on + strand at 131.059 kb on - strand at 131.059 kb on - strand at 131.059 kb on - strand at 131.070 kb on - strand at 131.105 kb on + strand at 131.106 kb on - strand at 131.112 kb on + strand at 131.112 kb on + strand at 131.113 kb on - strand at 131.113 kb on - strand at 131.125 kb on - strand at 131.125 kb on - strand at 131.125 kb on - strand at 131.208 kb on - strand, within HMPREF1078_RS13445 at 131.285 kb on - strand, within HMPREF1078_RS13445 at 131.390 kb on - strand, within HMPREF1078_RS13445 at 131.408 kb on + strand, within HMPREF1078_RS13445 at 131.536 kb on - strand, within HMPREF1078_RS13445 at 131.561 kb on + strand, within HMPREF1078_RS13445 at 131.564 kb on - strand, within HMPREF1078_RS13445 at 131.602 kb on - strand, within HMPREF1078_RS13445 at 131.662 kb on - strand, within HMPREF1078_RS13445 at 131.662 kb on - strand, within HMPREF1078_RS13445 at 131.672 kb on + strand, within HMPREF1078_RS13445 at 131.696 kb on + strand, within HMPREF1078_RS13445 at 131.697 kb on - strand, within HMPREF1078_RS13445 at 131.697 kb on - strand, within HMPREF1078_RS13445 at 131.697 kb on - strand, within HMPREF1078_RS13445 at 131.698 kb on + strand, within HMPREF1078_RS13445 at 131.699 kb on - strand, within HMPREF1078_RS13445 at 131.703 kb on + strand, within HMPREF1078_RS13445 at 131.703 kb on + strand, within HMPREF1078_RS13445 at 131.708 kb on - strand, within HMPREF1078_RS13445 at 131.783 kb on - strand, within HMPREF1078_RS13445 at 131.783 kb on - strand, within HMPREF1078_RS13445 at 131.784 kb on + strand, within HMPREF1078_RS13445 at 131.784 kb on + strand, within HMPREF1078_RS13445 at 131.784 kb on + strand, within HMPREF1078_RS13445 at 131.784 kb on + strand, within HMPREF1078_RS13445 at 131.784 kb on + strand, within HMPREF1078_RS13445 at 131.784 kb on + strand, within HMPREF1078_RS13445 at 131.784 kb on + strand, within HMPREF1078_RS13445 at 131.784 kb on + strand, within HMPREF1078_RS13445 at 131.784 kb on + strand, within HMPREF1078_RS13445 at 131.784 kb on + strand, within HMPREF1078_RS13445 at 131.785 kb on - strand, within HMPREF1078_RS13445 at 131.785 kb on - strand, within HMPREF1078_RS13445 at 131.785 kb on - strand, within HMPREF1078_RS13445 at 131.785 kb on - strand, within HMPREF1078_RS13445 at 131.785 kb on - strand, within HMPREF1078_RS13445 at 131.785 kb on - strand, within HMPREF1078_RS13445 at 131.785 kb on - strand, within HMPREF1078_RS13445 at 131.871 kb on - strand, within HMPREF1078_RS13445 at 131.909 kb on + strand, within HMPREF1078_RS13445 at 131.909 kb on + strand, within HMPREF1078_RS13445 at 131.909 kb on + strand, within HMPREF1078_RS13445 at 131.909 kb on + strand, within HMPREF1078_RS13445 at 132.096 kb on + strand at 132.097 kb on - strand at 132.159 kb on - strand at 132.206 kb on + strand at 132.236 kb on - strand at 132.260 kb on + strand at 132.260 kb on + strand at 132.307 kb on + strand at 132.308 kb on - strand at 132.308 kb on - strand at 132.308 kb on - strand at 132.316 kb on + strand at 132.317 kb on - strand at 132.317 kb on - strand at 132.319 kb on - strand at 132.344 kb on - strand at 132.347 kb on + strand at 132.381 kb on + strand at 132.384 kb on - strand at 132.387 kb on - strand at 132.389 kb on + strand at 132.389 kb on + strand at 132.418 kb on - strand at 132.430 kb on + strand at 132.430 kb on + strand at 132.432 kb on + strand at 132.433 kb on - strand at 132.441 kb on + strand at 132.442 kb on - strand at 132.442 kb on - strand at 132.442 kb on - strand at 132.458 kb on - strand at 132.504 kb on - strand at 132.504 kb on - strand at 132.507 kb on + strand at 132.588 kb on - strand at 132.632 kb on - strand at 132.681 kb on - strand at 132.835 kb on + strand, within HMPREF1078_RS13450 at 132.835 kb on + strand, within HMPREF1078_RS13450 at 132.835 kb on + strand, within HMPREF1078_RS13450 at 132.837 kb on + strand, within HMPREF1078_RS13450 at 132.968 kb on + strand, within HMPREF1078_RS13450 at 132.982 kb on - strand, within HMPREF1078_RS13450 at 133.005 kb on + strand, within HMPREF1078_RS13450 at 133.005 kb on + strand, within HMPREF1078_RS13450 at 133.054 kb on + strand, within HMPREF1078_RS13450 at 133.055 kb on - strand, within HMPREF1078_RS13450 at 133.092 kb on + strand, within HMPREF1078_RS13450 at 133.167 kb on - strand, within HMPREF1078_RS13450 at 133.167 kb on - strand, within HMPREF1078_RS13450
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 remove 130,070 + HMPREF1078_RS13440 0.70 -2.4 130,111 + HMPREF1078_RS13440 0.71 +0.6 130,179 + HMPREF1078_RS13440 0.73 -2.7 130,249 - HMPREF1078_RS13440 0.76 -3.5 130,250 + HMPREF1078_RS13440 0.76 -2.3 130,251 - HMPREF1078_RS13440 0.76 +0.1 130,316 + HMPREF1078_RS13440 0.78 -1.3 130,317 - HMPREF1078_RS13440 0.78 +0.7 130,428 - HMPREF1078_RS13440 0.81 +1.9 130,502 + HMPREF1078_RS13440 0.84 +0.9 130,503 - HMPREF1078_RS13440 0.84 -0.5 130,537 + HMPREF1078_RS13440 0.85 -0.3 130,537 + HMPREF1078_RS13440 0.85 +0.0 130,538 - HMPREF1078_RS13440 0.85 -0.3 130,591 + HMPREF1078_RS13440 0.87 -0.1 130,592 - HMPREF1078_RS13440 0.87 -2.6 130,668 - HMPREF1078_RS13440 0.89 +0.0 130,668 - HMPREF1078_RS13440 0.89 -1.0 130,770 + +2.0 130,770 + -2.9 130,839 + -0.6 130,840 - -0.9 130,840 - -0.1 130,840 - -0.8 130,921 - +1.5 130,987 + +0.1 130,987 + -0.9 130,987 + -2.3 131,002 - +0.7 131,013 + +1.7 131,058 + -1.6 131,059 - -0.4 131,059 - -1.5 131,059 - -1.0 131,070 - -1.3 131,105 + -3.2 131,106 - -1.9 131,112 + +2.0 131,112 + -1.5 131,113 - -1.7 131,113 - -3.4 131,125 - -3.2 131,125 - -0.1 131,125 - +0.5 131,208 - HMPREF1078_RS13445 0.15 +0.7 131,285 - HMPREF1078_RS13445 0.22 -0.0 131,390 - HMPREF1078_RS13445 0.31 -2.4 131,408 + HMPREF1078_RS13445 0.32 +0.1 131,536 - HMPREF1078_RS13445 0.43 -1.0 131,561 + HMPREF1078_RS13445 0.45 +0.9 131,564 - HMPREF1078_RS13445 0.45 -1.4 131,602 - HMPREF1078_RS13445 0.49 -1.0 131,662 - HMPREF1078_RS13445 0.54 -0.5 131,662 - HMPREF1078_RS13445 0.54 -2.4 131,672 + HMPREF1078_RS13445 0.55 -0.2 131,696 + HMPREF1078_RS13445 0.57 -1.5 131,697 - HMPREF1078_RS13445 0.57 -0.3 131,697 - HMPREF1078_RS13445 0.57 -1.0 131,697 - HMPREF1078_RS13445 0.57 +0.6 131,698 + HMPREF1078_RS13445 0.57 -0.5 131,699 - HMPREF1078_RS13445 0.57 -5.0 131,703 + HMPREF1078_RS13445 0.57 -2.6 131,703 + HMPREF1078_RS13445 0.57 +0.2 131,708 - HMPREF1078_RS13445 0.58 -3.1 131,783 - HMPREF1078_RS13445 0.64 -1.8 131,783 - HMPREF1078_RS13445 0.64 -1.4 131,784 + HMPREF1078_RS13445 0.64 -1.1 131,784 + HMPREF1078_RS13445 0.64 -2.3 131,784 + HMPREF1078_RS13445 0.64 -1.0 131,784 + HMPREF1078_RS13445 0.64 -4.0 131,784 + HMPREF1078_RS13445 0.64 -0.7 131,784 + HMPREF1078_RS13445 0.64 -1.9 131,784 + HMPREF1078_RS13445 0.64 +0.2 131,784 + HMPREF1078_RS13445 0.64 -1.3 131,784 + HMPREF1078_RS13445 0.64 +2.4 131,784 + HMPREF1078_RS13445 0.64 +2.4 131,785 - HMPREF1078_RS13445 0.64 -2.1 131,785 - HMPREF1078_RS13445 0.64 -0.2 131,785 - HMPREF1078_RS13445 0.64 -1.0 131,785 - HMPREF1078_RS13445 0.64 -1.0 131,785 - HMPREF1078_RS13445 0.64 -3.1 131,785 - HMPREF1078_RS13445 0.64 +1.6 131,785 - HMPREF1078_RS13445 0.64 -1.1 131,871 - HMPREF1078_RS13445 0.72 -1.0 131,909 + HMPREF1078_RS13445 0.75 -0.6 131,909 + HMPREF1078_RS13445 0.75 -1.8 131,909 + HMPREF1078_RS13445 0.75 -2.0 131,909 + HMPREF1078_RS13445 0.75 -1.5 132,096 + -0.2 132,097 - -0.3 132,159 - +0.6 132,206 + -1.9 132,236 - +0.9 132,260 + -2.5 132,260 + -1.8 132,307 + +2.2 132,308 - -2.4 132,308 - -0.4 132,308 - -1.4 132,316 + +0.7 132,317 - +1.7 132,317 - -0.3 132,319 - -2.1 132,344 - +0.4 132,347 + -3.3 132,381 + -0.6 132,384 - -1.5 132,387 - -2.1 132,389 + -3.5 132,389 + +1.4 132,418 - -1.7 132,430 + +0.1 132,430 + +0.0 132,432 + -2.3 132,433 - -1.7 132,441 + -0.8 132,442 - +1.4 132,442 - +0.1 132,442 - -0.8 132,458 - -2.7 132,504 - -3.4 132,504 - -4.1 132,507 + +0.3 132,588 - +1.2 132,632 - -1.6 132,681 - -2.8 132,835 + HMPREF1078_RS13450 0.17 -0.5 132,835 + HMPREF1078_RS13450 0.17 -0.7 132,835 + HMPREF1078_RS13450 0.17 -0.8 132,837 + HMPREF1078_RS13450 0.17 -3.1 132,968 + HMPREF1078_RS13450 0.24 +0.5 132,982 - HMPREF1078_RS13450 0.24 +2.2 133,005 + HMPREF1078_RS13450 0.25 -3.6 133,005 + HMPREF1078_RS13450 0.25 +0.1 133,054 + HMPREF1078_RS13450 0.28 -0.7 133,055 - HMPREF1078_RS13450 0.28 -0.1 133,092 + HMPREF1078_RS13450 0.30 -2.0 133,167 - HMPREF1078_RS13450 0.33 +0.8 133,167 - HMPREF1078_RS13450 0.33 -1.2
Or see this region's nucleotide sequence