Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS12820 and HMPREF1078_RS12825 overlap by 32 nucleotides HMPREF1078_RS12825 and HMPREF1078_RS12830 are separated by 21 nucleotides HMPREF1078_RS12830 and HMPREF1078_RS12835 are separated by 113 nucleotides
HMPREF1078_RS12820: HMPREF1078_RS12820 - Na+/H+ antiporter NhaC, at 591,637 to 593,103
_RS12820
HMPREF1078_RS12825: HMPREF1078_RS12825 - dicarboxylate/amino acid:cation symporter, at 593,072 to 594,259
_RS12825
HMPREF1078_RS12830: HMPREF1078_RS12830 - 3'-5' exonuclease, at 594,281 to 594,805
_RS12830
HMPREF1078_RS12835: HMPREF1078_RS12835 - S41 family peptidase, at 594,919 to 598,158
_RS12835
Position (kb) 593
594
595 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 592.077 kb on - strand, within HMPREF1078_RS12820 at 592.158 kb on - strand, within HMPREF1078_RS12820 at 592.158 kb on - strand, within HMPREF1078_RS12820 at 592.158 kb on - strand, within HMPREF1078_RS12820 at 592.222 kb on - strand, within HMPREF1078_RS12820 at 592.222 kb on - strand, within HMPREF1078_RS12820 at 592.254 kb on + strand, within HMPREF1078_RS12820 at 592.350 kb on + strand, within HMPREF1078_RS12820 at 592.350 kb on + strand, within HMPREF1078_RS12820 at 592.350 kb on + strand, within HMPREF1078_RS12820 at 592.351 kb on - strand, within HMPREF1078_RS12820 at 592.351 kb on - strand, within HMPREF1078_RS12820 at 592.561 kb on + strand, within HMPREF1078_RS12820 at 592.569 kb on + strand, within HMPREF1078_RS12820 at 592.570 kb on - strand, within HMPREF1078_RS12820 at 592.578 kb on - strand, within HMPREF1078_RS12820 at 592.811 kb on - strand, within HMPREF1078_RS12820 at 592.812 kb on + strand, within HMPREF1078_RS12820 at 592.813 kb on - strand, within HMPREF1078_RS12820 at 592.813 kb on - strand, within HMPREF1078_RS12820 at 592.836 kb on + strand, within HMPREF1078_RS12820 at 592.836 kb on + strand, within HMPREF1078_RS12820 at 592.837 kb on - strand, within HMPREF1078_RS12820 at 592.849 kb on - strand, within HMPREF1078_RS12820 at 592.852 kb on + strand, within HMPREF1078_RS12820 at 592.853 kb on - strand, within HMPREF1078_RS12820 at 592.890 kb on + strand, within HMPREF1078_RS12820 at 592.895 kb on + strand, within HMPREF1078_RS12820 at 592.896 kb on - strand, within HMPREF1078_RS12820 at 592.923 kb on - strand, within HMPREF1078_RS12820 at 592.926 kb on - strand, within HMPREF1078_RS12820 at 592.938 kb on + strand, within HMPREF1078_RS12820 at 592.947 kb on + strand, within HMPREF1078_RS12820 at 592.948 kb on - strand, within HMPREF1078_RS12820 at 593.012 kb on + strand at 593.182 kb on + strand at 593.227 kb on + strand, within HMPREF1078_RS12825 at 593.320 kb on + strand, within HMPREF1078_RS12825 at 593.321 kb on - strand, within HMPREF1078_RS12825 at 593.371 kb on + strand, within HMPREF1078_RS12825 at 593.374 kb on - strand, within HMPREF1078_RS12825 at 593.440 kb on + strand, within HMPREF1078_RS12825 at 593.458 kb on + strand, within HMPREF1078_RS12825 at 593.488 kb on - strand, within HMPREF1078_RS12825 at 593.516 kb on + strand, within HMPREF1078_RS12825 at 593.518 kb on + strand, within HMPREF1078_RS12825 at 593.668 kb on + strand, within HMPREF1078_RS12825 at 593.697 kb on + strand, within HMPREF1078_RS12825 at 593.697 kb on + strand, within HMPREF1078_RS12825 at 593.722 kb on - strand, within HMPREF1078_RS12825 at 593.725 kb on + strand, within HMPREF1078_RS12825 at 593.725 kb on + strand, within HMPREF1078_RS12825 at 593.725 kb on + strand, within HMPREF1078_RS12825 at 593.726 kb on - strand, within HMPREF1078_RS12825 at 593.915 kb on - strand, within HMPREF1078_RS12825 at 593.918 kb on - strand, within HMPREF1078_RS12825 at 593.947 kb on + strand, within HMPREF1078_RS12825 at 593.972 kb on + strand, within HMPREF1078_RS12825 at 593.973 kb on - strand, within HMPREF1078_RS12825 at 593.974 kb on + strand, within HMPREF1078_RS12825 at 593.974 kb on + strand, within HMPREF1078_RS12825 at 593.974 kb on + strand, within HMPREF1078_RS12825 at 593.975 kb on - strand, within HMPREF1078_RS12825 at 593.975 kb on - strand, within HMPREF1078_RS12825 at 593.975 kb on - strand, within HMPREF1078_RS12825 at 594.071 kb on - strand, within HMPREF1078_RS12825 at 594.091 kb on - strand, within HMPREF1078_RS12825 at 594.349 kb on - strand, within HMPREF1078_RS12830 at 594.413 kb on + strand, within HMPREF1078_RS12830 at 594.439 kb on - strand, within HMPREF1078_RS12830 at 594.469 kb on - strand, within HMPREF1078_RS12830 at 594.469 kb on - strand, within HMPREF1078_RS12830 at 594.477 kb on + strand, within HMPREF1078_RS12830 at 594.622 kb on + strand, within HMPREF1078_RS12830 at 594.635 kb on + strand, within HMPREF1078_RS12830 at 594.715 kb on + strand, within HMPREF1078_RS12830 at 594.716 kb on - strand, within HMPREF1078_RS12830 at 594.730 kb on + strand, within HMPREF1078_RS12830 at 594.730 kb on + strand, within HMPREF1078_RS12830 at 594.730 kb on + strand, within HMPREF1078_RS12830 at 594.751 kb on + strand, within HMPREF1078_RS12830 at 594.821 kb on - strand at 594.910 kb on - strand at 594.925 kb on - strand at 595.153 kb on - strand at 595.154 kb on + strand at 595.160 kb on - strand at 595.195 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 remove 592,077 - HMPREF1078_RS12820 0.30 +0.1 592,158 - HMPREF1078_RS12820 0.36 -2.7 592,158 - HMPREF1078_RS12820 0.36 -2.9 592,158 - HMPREF1078_RS12820 0.36 -0.9 592,222 - HMPREF1078_RS12820 0.40 -2.0 592,222 - HMPREF1078_RS12820 0.40 -1.3 592,254 + HMPREF1078_RS12820 0.42 -3.2 592,350 + HMPREF1078_RS12820 0.49 +1.0 592,350 + HMPREF1078_RS12820 0.49 -0.3 592,350 + HMPREF1078_RS12820 0.49 +0.1 592,351 - HMPREF1078_RS12820 0.49 -2.5 592,351 - HMPREF1078_RS12820 0.49 -2.6 592,561 + HMPREF1078_RS12820 0.63 -2.5 592,569 + HMPREF1078_RS12820 0.64 +1.6 592,570 - HMPREF1078_RS12820 0.64 -3.4 592,578 - HMPREF1078_RS12820 0.64 -2.3 592,811 - HMPREF1078_RS12820 0.80 +0.1 592,812 + HMPREF1078_RS12820 0.80 +0.6 592,813 - HMPREF1078_RS12820 0.80 -0.5 592,813 - HMPREF1078_RS12820 0.80 -0.5 592,836 + HMPREF1078_RS12820 0.82 -0.9 592,836 + HMPREF1078_RS12820 0.82 +0.7 592,837 - HMPREF1078_RS12820 0.82 -4.4 592,849 - HMPREF1078_RS12820 0.83 -4.7 592,852 + HMPREF1078_RS12820 0.83 -3.3 592,853 - HMPREF1078_RS12820 0.83 -3.5 592,890 + HMPREF1078_RS12820 0.85 +2.6 592,895 + HMPREF1078_RS12820 0.86 -0.8 592,896 - HMPREF1078_RS12820 0.86 +0.5 592,923 - HMPREF1078_RS12820 0.88 -4.4 592,926 - HMPREF1078_RS12820 0.88 -3.9 592,938 + HMPREF1078_RS12820 0.89 -0.3 592,947 + HMPREF1078_RS12820 0.89 -1.9 592,948 - HMPREF1078_RS12820 0.89 -4.7 593,012 + -0.2 593,182 + -2.7 593,227 + HMPREF1078_RS12825 0.13 -0.7 593,320 + HMPREF1078_RS12825 0.21 -4.5 593,321 - HMPREF1078_RS12825 0.21 -1.4 593,371 + HMPREF1078_RS12825 0.25 -3.0 593,374 - HMPREF1078_RS12825 0.25 -3.0 593,440 + HMPREF1078_RS12825 0.31 +0.1 593,458 + HMPREF1078_RS12825 0.32 -1.6 593,488 - HMPREF1078_RS12825 0.35 -3.9 593,516 + HMPREF1078_RS12825 0.37 -3.1 593,518 + HMPREF1078_RS12825 0.38 -2.6 593,668 + HMPREF1078_RS12825 0.50 -2.9 593,697 + HMPREF1078_RS12825 0.53 -2.3 593,697 + HMPREF1078_RS12825 0.53 -4.1 593,722 - HMPREF1078_RS12825 0.55 -2.1 593,725 + HMPREF1078_RS12825 0.55 -0.7 593,725 + HMPREF1078_RS12825 0.55 -2.1 593,725 + HMPREF1078_RS12825 0.55 -5.3 593,726 - HMPREF1078_RS12825 0.55 -4.3 593,915 - HMPREF1078_RS12825 0.71 -1.2 593,918 - HMPREF1078_RS12825 0.71 -3.7 593,947 + HMPREF1078_RS12825 0.74 -4.3 593,972 + HMPREF1078_RS12825 0.76 -4.2 593,973 - HMPREF1078_RS12825 0.76 -3.3 593,974 + HMPREF1078_RS12825 0.76 -3.6 593,974 + HMPREF1078_RS12825 0.76 -3.7 593,974 + HMPREF1078_RS12825 0.76 -4.0 593,975 - HMPREF1078_RS12825 0.76 -3.7 593,975 - HMPREF1078_RS12825 0.76 -3.5 593,975 - HMPREF1078_RS12825 0.76 -3.7 594,071 - HMPREF1078_RS12825 0.84 -2.9 594,091 - HMPREF1078_RS12825 0.86 -2.1 594,349 - HMPREF1078_RS12830 0.13 -1.0 594,413 + HMPREF1078_RS12830 0.25 -0.1 594,439 - HMPREF1078_RS12830 0.30 +2.3 594,469 - HMPREF1078_RS12830 0.36 -0.2 594,469 - HMPREF1078_RS12830 0.36 -0.4 594,477 + HMPREF1078_RS12830 0.37 -1.2 594,622 + HMPREF1078_RS12830 0.65 +1.9 594,635 + HMPREF1078_RS12830 0.67 +2.7 594,715 + HMPREF1078_RS12830 0.83 -2.9 594,716 - HMPREF1078_RS12830 0.83 -1.6 594,730 + HMPREF1078_RS12830 0.86 -0.9 594,730 + HMPREF1078_RS12830 0.86 -2.3 594,730 + HMPREF1078_RS12830 0.86 -0.9 594,751 + HMPREF1078_RS12830 0.90 +1.1 594,821 - -1.7 594,910 - +1.7 594,925 - -1.6 595,153 - +1.3 595,154 + +0.3 595,160 - -1.3 595,195 - +0.8
Or see this region's nucleotide sequence