Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS12605 and HMPREF1078_RS12610 are separated by 106 nucleotides HMPREF1078_RS12610 and HMPREF1078_RS12615 are separated by 6 nucleotides
HMPREF1078_RS12605: HMPREF1078_RS12605 - BamA/TamA family outer membrane protein, at 539,649 to 541,952
_RS12605
HMPREF1078_RS12610: HMPREF1078_RS12610 - arginase, at 542,059 to 542,955
_RS12610
HMPREF1078_RS12615: HMPREF1078_RS12615 - ornithine--oxo-acid transaminase, at 542,962 to 544,170
_RS12615
Position (kb) 542
543 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 541.139 kb on + strand, within HMPREF1078_RS12605 at 541.226 kb on + strand, within HMPREF1078_RS12605 at 541.230 kb on + strand, within HMPREF1078_RS12605 at 541.230 kb on + strand, within HMPREF1078_RS12605 at 541.230 kb on + strand, within HMPREF1078_RS12605 at 541.230 kb on + strand, within HMPREF1078_RS12605 at 541.230 kb on + strand, within HMPREF1078_RS12605 at 541.231 kb on - strand, within HMPREF1078_RS12605 at 541.231 kb on - strand, within HMPREF1078_RS12605 at 541.236 kb on + strand, within HMPREF1078_RS12605 at 541.237 kb on - strand, within HMPREF1078_RS12605 at 541.257 kb on - strand, within HMPREF1078_RS12605 at 541.323 kb on + strand, within HMPREF1078_RS12605 at 541.416 kb on + strand, within HMPREF1078_RS12605 at 541.417 kb on - strand, within HMPREF1078_RS12605 at 541.422 kb on + strand, within HMPREF1078_RS12605 at 541.426 kb on - strand, within HMPREF1078_RS12605 at 541.476 kb on + strand, within HMPREF1078_RS12605 at 541.478 kb on + strand, within HMPREF1078_RS12605 at 541.479 kb on - strand, within HMPREF1078_RS12605 at 541.482 kb on + strand, within HMPREF1078_RS12605 at 541.521 kb on + strand, within HMPREF1078_RS12605 at 541.523 kb on + strand, within HMPREF1078_RS12605 at 541.720 kb on + strand, within HMPREF1078_RS12605 at 541.809 kb on + strand at 541.861 kb on + strand at 541.862 kb on - strand at 541.862 kb on - strand at 541.867 kb on - strand at 541.887 kb on + strand at 541.887 kb on + strand at 542.019 kb on - strand at 542.019 kb on - strand at 542.076 kb on + strand at 542.077 kb on - strand at 542.087 kb on - strand at 542.087 kb on - strand at 542.087 kb on - strand at 542.180 kb on - strand, within HMPREF1078_RS12610 at 542.180 kb on - strand, within HMPREF1078_RS12610 at 542.180 kb on - strand, within HMPREF1078_RS12610 at 542.180 kb on - strand, within HMPREF1078_RS12610 at 542.181 kb on + strand, within HMPREF1078_RS12610 at 542.182 kb on - strand, within HMPREF1078_RS12610 at 542.182 kb on - strand, within HMPREF1078_RS12610 at 542.185 kb on + strand, within HMPREF1078_RS12610 at 542.278 kb on + strand, within HMPREF1078_RS12610 at 542.278 kb on + strand, within HMPREF1078_RS12610 at 542.279 kb on - strand, within HMPREF1078_RS12610 at 542.376 kb on + strand, within HMPREF1078_RS12610 at 542.386 kb on + strand, within HMPREF1078_RS12610 at 542.487 kb on + strand, within HMPREF1078_RS12610 at 542.487 kb on + strand, within HMPREF1078_RS12610 at 542.545 kb on - strand, within HMPREF1078_RS12610 at 542.545 kb on - strand, within HMPREF1078_RS12610 at 542.708 kb on + strand, within HMPREF1078_RS12610 at 542.709 kb on - strand, within HMPREF1078_RS12610 at 542.730 kb on + strand, within HMPREF1078_RS12610 at 542.731 kb on - strand, within HMPREF1078_RS12610 at 542.811 kb on - strand, within HMPREF1078_RS12610 at 542.811 kb on - strand, within HMPREF1078_RS12610 at 542.811 kb on - strand, within HMPREF1078_RS12610 at 542.932 kb on + strand at 542.933 kb on - strand at 542.933 kb on - strand at 542.955 kb on + strand at 542.956 kb on - strand at 542.979 kb on + strand at 542.979 kb on + strand at 542.980 kb on - strand at 543.051 kb on + strand at 543.051 kb on + strand at 543.052 kb on - strand at 543.105 kb on + strand, within HMPREF1078_RS12615 at 543.280 kb on + strand, within HMPREF1078_RS12615 at 543.280 kb on + strand, within HMPREF1078_RS12615 at 543.314 kb on + strand, within HMPREF1078_RS12615 at 543.413 kb on - strand, within HMPREF1078_RS12615 at 543.422 kb on - strand, within HMPREF1078_RS12615 at 543.443 kb on + strand, within HMPREF1078_RS12615 at 543.513 kb on + strand, within HMPREF1078_RS12615 at 543.514 kb on - strand, within HMPREF1078_RS12615 at 543.514 kb on - strand, within HMPREF1078_RS12615 at 543.514 kb on - strand, within HMPREF1078_RS12615 at 543.514 kb on - strand, within HMPREF1078_RS12615 at 543.533 kb on + strand, within HMPREF1078_RS12615 at 543.533 kb on + strand, within HMPREF1078_RS12615 at 543.533 kb on + strand, within HMPREF1078_RS12615 at 543.540 kb on + strand, within HMPREF1078_RS12615 at 543.587 kb on - strand, within HMPREF1078_RS12615 at 543.589 kb on - strand, within HMPREF1078_RS12615 at 543.681 kb on + strand, within HMPREF1078_RS12615 at 543.682 kb on - strand, within HMPREF1078_RS12615 at 543.682 kb on - strand, within HMPREF1078_RS12615 at 543.683 kb on + strand, within HMPREF1078_RS12615 at 543.915 kb on - strand, within HMPREF1078_RS12615 at 543.915 kb on - strand, within HMPREF1078_RS12615
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 remove 541,139 + HMPREF1078_RS12605 0.65 -0.3 541,226 + HMPREF1078_RS12605 0.68 -2.1 541,230 + HMPREF1078_RS12605 0.69 -2.6 541,230 + HMPREF1078_RS12605 0.69 -3.1 541,230 + HMPREF1078_RS12605 0.69 -0.9 541,230 + HMPREF1078_RS12605 0.69 -0.5 541,230 + HMPREF1078_RS12605 0.69 -1.0 541,231 - HMPREF1078_RS12605 0.69 -0.7 541,231 - HMPREF1078_RS12605 0.69 -2.8 541,236 + HMPREF1078_RS12605 0.69 +0.5 541,237 - HMPREF1078_RS12605 0.69 -1.5 541,257 - HMPREF1078_RS12605 0.70 -1.1 541,323 + HMPREF1078_RS12605 0.73 -0.0 541,416 + HMPREF1078_RS12605 0.77 +1.9 541,417 - HMPREF1078_RS12605 0.77 -0.5 541,422 + HMPREF1078_RS12605 0.77 -2.4 541,426 - HMPREF1078_RS12605 0.77 +0.2 541,476 + HMPREF1078_RS12605 0.79 -0.1 541,478 + HMPREF1078_RS12605 0.79 +1.0 541,479 - HMPREF1078_RS12605 0.79 +2.4 541,482 + HMPREF1078_RS12605 0.80 -1.3 541,521 + HMPREF1078_RS12605 0.81 -2.0 541,523 + HMPREF1078_RS12605 0.81 -1.9 541,720 + HMPREF1078_RS12605 0.90 -0.2 541,809 + -2.5 541,861 + -3.7 541,862 - -0.6 541,862 - +1.2 541,867 - -0.3 541,887 + +1.1 541,887 + -2.7 542,019 - -0.2 542,019 - -0.1 542,076 + +0.1 542,077 - +0.8 542,087 - +1.0 542,087 - -1.3 542,087 - +3.3 542,180 - HMPREF1078_RS12610 0.13 -4.1 542,180 - HMPREF1078_RS12610 0.13 -0.0 542,180 - HMPREF1078_RS12610 0.13 -0.2 542,180 - HMPREF1078_RS12610 0.13 +1.0 542,181 + HMPREF1078_RS12610 0.14 -1.8 542,182 - HMPREF1078_RS12610 0.14 +1.3 542,182 - HMPREF1078_RS12610 0.14 +3.2 542,185 + HMPREF1078_RS12610 0.14 -1.8 542,278 + HMPREF1078_RS12610 0.24 +0.3 542,278 + HMPREF1078_RS12610 0.24 -0.2 542,279 - HMPREF1078_RS12610 0.25 -4.3 542,376 + HMPREF1078_RS12610 0.35 -2.7 542,386 + HMPREF1078_RS12610 0.36 +3.1 542,487 + HMPREF1078_RS12610 0.48 -0.9 542,487 + HMPREF1078_RS12610 0.48 +0.8 542,545 - HMPREF1078_RS12610 0.54 -0.0 542,545 - HMPREF1078_RS12610 0.54 +1.5 542,708 + HMPREF1078_RS12610 0.72 +0.2 542,709 - HMPREF1078_RS12610 0.72 -1.2 542,730 + HMPREF1078_RS12610 0.75 +1.7 542,731 - HMPREF1078_RS12610 0.75 +0.1 542,811 - HMPREF1078_RS12610 0.84 +0.5 542,811 - HMPREF1078_RS12610 0.84 -0.5 542,811 - HMPREF1078_RS12610 0.84 -0.0 542,932 + +1.7 542,933 - +1.1 542,933 - +0.2 542,955 + -2.9 542,956 - +2.5 542,979 + -0.2 542,979 + -2.2 542,980 - -1.2 543,051 + +0.4 543,051 + -1.5 543,052 - -0.4 543,105 + HMPREF1078_RS12615 0.12 +1.0 543,280 + HMPREF1078_RS12615 0.26 -1.5 543,280 + HMPREF1078_RS12615 0.26 +1.7 543,314 + HMPREF1078_RS12615 0.29 +0.2 543,413 - HMPREF1078_RS12615 0.37 +0.9 543,422 - HMPREF1078_RS12615 0.38 +1.4 543,443 + HMPREF1078_RS12615 0.40 +2.5 543,513 + HMPREF1078_RS12615 0.46 +1.4 543,514 - HMPREF1078_RS12615 0.46 +1.3 543,514 - HMPREF1078_RS12615 0.46 +0.9 543,514 - HMPREF1078_RS12615 0.46 -1.5 543,514 - HMPREF1078_RS12615 0.46 +1.7 543,533 + HMPREF1078_RS12615 0.47 +1.6 543,533 + HMPREF1078_RS12615 0.47 +0.4 543,533 + HMPREF1078_RS12615 0.47 -0.6 543,540 + HMPREF1078_RS12615 0.48 -2.0 543,587 - HMPREF1078_RS12615 0.52 -0.7 543,589 - HMPREF1078_RS12615 0.52 +0.2 543,681 + HMPREF1078_RS12615 0.59 -1.1 543,682 - HMPREF1078_RS12615 0.60 -1.7 543,682 - HMPREF1078_RS12615 0.60 -1.4 543,683 + HMPREF1078_RS12615 0.60 +0.5 543,915 - HMPREF1078_RS12615 0.79 +1.7 543,915 - HMPREF1078_RS12615 0.79 -0.9
Or see this region's nucleotide sequence