Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS11555

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS11550 and HMPREF1078_RS11555 are separated by 108 nucleotidesHMPREF1078_RS11555 and HMPREF1078_RS11560 are separated by 135 nucleotidesHMPREF1078_RS11560 and HMPREF1078_RS11565 are separated by 123 nucleotides HMPREF1078_RS11550: HMPREF1078_RS11550 - adenosine kinase, at 250,043 to 251,020 _RS11550 HMPREF1078_RS11555: HMPREF1078_RS11555 - tRNA-Asn, at 251,129 to 251,202 _RS11555 HMPREF1078_RS11560: HMPREF1078_RS11560 - tRNA-Asn, at 251,338 to 251,411 _RS11560 HMPREF1078_RS11565: HMPREF1078_RS11565 - tRNA (guanosine(46)-N7)-methyltransferase TrmB, at 251,535 to 252,293 _RS11565 Position (kb) 251 252Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 250.148 kb on - strand, within HMPREF1078_RS11550at 250.305 kb on - strand, within HMPREF1078_RS11550at 250.416 kb on + strand, within HMPREF1078_RS11550at 250.416 kb on + strand, within HMPREF1078_RS11550at 250.436 kb on + strand, within HMPREF1078_RS11550at 250.437 kb on - strand, within HMPREF1078_RS11550at 250.439 kb on + strand, within HMPREF1078_RS11550at 250.475 kb on + strand, within HMPREF1078_RS11550at 250.555 kb on - strand, within HMPREF1078_RS11550at 250.565 kb on - strand, within HMPREF1078_RS11550at 250.571 kb on - strand, within HMPREF1078_RS11550at 250.652 kb on - strand, within HMPREF1078_RS11550at 250.696 kb on + strand, within HMPREF1078_RS11550at 250.728 kb on + strand, within HMPREF1078_RS11550at 250.756 kb on - strand, within HMPREF1078_RS11550at 250.784 kb on - strand, within HMPREF1078_RS11550at 250.784 kb on - strand, within HMPREF1078_RS11550at 250.789 kb on + strand, within HMPREF1078_RS11550at 250.789 kb on + strand, within HMPREF1078_RS11550at 250.790 kb on + strand, within HMPREF1078_RS11550at 250.790 kb on - strand, within HMPREF1078_RS11550at 250.894 kb on + strand, within HMPREF1078_RS11550at 250.918 kb on + strand, within HMPREF1078_RS11550at 250.938 kb on - strandat 250.944 kb on - strandat 250.955 kb on + strandat 251.149 kb on + strand, within HMPREF1078_RS11555at 251.165 kb on + strand, within HMPREF1078_RS11555at 251.335 kb on + strandat 251.335 kb on + strandat 251.335 kb on + strandat 251.335 kb on + strandat 251.335 kb on + strandat 251.335 kb on + strandat 251.335 kb on + strandat 251.425 kb on + strandat 251.425 kb on + strandat 251.425 kb on + strandat 251.426 kb on - strandat 251.426 kb on - strandat 251.426 kb on - strandat 251.438 kb on + strandat 251.438 kb on + strandat 251.438 kb on + strandat 251.438 kb on + strandat 251.439 kb on - strandat 251.439 kb on - strandat 251.439 kb on - strandat 251.439 kb on - strandat 251.439 kb on - strandat 251.450 kb on + strandat 251.450 kb on + strandat 251.450 kb on + strandat 251.482 kb on - strandat 251.482 kb on - strandat 251.514 kb on + strandat 251.689 kb on + strand, within HMPREF1078_RS11565at 251.709 kb on + strand, within HMPREF1078_RS11565at 251.711 kb on + strand, within HMPREF1078_RS11565at 251.716 kb on + strand, within HMPREF1078_RS11565at 251.716 kb on + strand, within HMPREF1078_RS11565at 251.731 kb on + strand, within HMPREF1078_RS11565at 251.939 kb on + strand, within HMPREF1078_RS11565at 251.995 kb on + strand, within HMPREF1078_RS11565at 251.995 kb on + strand, within HMPREF1078_RS11565at 251.995 kb on + strand, within HMPREF1078_RS11565at 251.996 kb on - strand, within HMPREF1078_RS11565at 252.024 kb on + strand, within HMPREF1078_RS11565at 252.024 kb on + strand, within HMPREF1078_RS11565at 252.024 kb on + strand, within HMPREF1078_RS11565at 252.024 kb on + strand, within HMPREF1078_RS11565at 252.030 kb on + strand, within HMPREF1078_RS11565at 252.090 kb on + strand, within HMPREF1078_RS11565at 252.132 kb on + strand, within HMPREF1078_RS11565at 252.132 kb on + strand, within HMPREF1078_RS11565at 252.174 kb on + strand, within HMPREF1078_RS11565at 252.174 kb on + strand, within HMPREF1078_RS11565

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3
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250,148 - HMPREF1078_RS11550 0.11 +0.1
250,305 - HMPREF1078_RS11550 0.27 +1.1
250,416 + HMPREF1078_RS11550 0.38 +1.6
250,416 + HMPREF1078_RS11550 0.38 -0.5
250,436 + HMPREF1078_RS11550 0.40 +0.4
250,437 - HMPREF1078_RS11550 0.40 +0.5
250,439 + HMPREF1078_RS11550 0.40 +0.6
250,475 + HMPREF1078_RS11550 0.44 +0.8
250,555 - HMPREF1078_RS11550 0.52 -0.2
250,565 - HMPREF1078_RS11550 0.53 +1.1
250,571 - HMPREF1078_RS11550 0.54 -3.4
250,652 - HMPREF1078_RS11550 0.62 +2.2
250,696 + HMPREF1078_RS11550 0.67 +1.5
250,728 + HMPREF1078_RS11550 0.70 -2.5
250,756 - HMPREF1078_RS11550 0.73 +0.5
250,784 - HMPREF1078_RS11550 0.76 +0.3
250,784 - HMPREF1078_RS11550 0.76 +1.3
250,789 + HMPREF1078_RS11550 0.76 +0.1
250,789 + HMPREF1078_RS11550 0.76 +1.7
250,790 + HMPREF1078_RS11550 0.76 +1.1
250,790 - HMPREF1078_RS11550 0.76 -2.2
250,894 + HMPREF1078_RS11550 0.87 -1.3
250,918 + HMPREF1078_RS11550 0.89 +1.7
250,938 - -2.5
250,944 - +0.9
250,955 + +1.2
251,149 + HMPREF1078_RS11555 0.27 -2.9
251,165 + HMPREF1078_RS11555 0.49 -2.2
251,335 + +0.2
251,335 + -1.3
251,335 + +0.4
251,335 + -1.4
251,335 + +0.8
251,335 + +0.3
251,335 + -0.0
251,425 + -0.6
251,425 + -1.0
251,425 + -2.5
251,426 - -0.9
251,426 - -4.9
251,426 - -2.4
251,438 + -0.2
251,438 + +0.7
251,438 + -0.5
251,438 + -1.5
251,439 - +1.1
251,439 - -0.2
251,439 - +1.1
251,439 - -1.8
251,439 - +1.3
251,450 + +1.0
251,450 + -1.8
251,450 + +0.1
251,482 - +1.1
251,482 - -0.1
251,514 + +1.3
251,689 + HMPREF1078_RS11565 0.20 +0.1
251,709 + HMPREF1078_RS11565 0.23 -0.3
251,711 + HMPREF1078_RS11565 0.23 +1.4
251,716 + HMPREF1078_RS11565 0.24 -2.3
251,716 + HMPREF1078_RS11565 0.24 -0.1
251,731 + HMPREF1078_RS11565 0.26 -3.0
251,939 + HMPREF1078_RS11565 0.53 -2.8
251,995 + HMPREF1078_RS11565 0.61 -1.0
251,995 + HMPREF1078_RS11565 0.61 +0.9
251,995 + HMPREF1078_RS11565 0.61 -0.2
251,996 - HMPREF1078_RS11565 0.61 -0.7
252,024 + HMPREF1078_RS11565 0.64 -0.1
252,024 + HMPREF1078_RS11565 0.64 +3.1
252,024 + HMPREF1078_RS11565 0.64 -1.0
252,024 + HMPREF1078_RS11565 0.64 -0.9
252,030 + HMPREF1078_RS11565 0.65 -2.0
252,090 + HMPREF1078_RS11565 0.73 -4.3
252,132 + HMPREF1078_RS11565 0.79 -0.1
252,132 + HMPREF1078_RS11565 0.79 +1.3
252,174 + HMPREF1078_RS11565 0.84 -0.2
252,174 + HMPREF1078_RS11565 0.84 +1.9

Or see this region's nucleotide sequence