Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS11545

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS11540 and HMPREF1078_RS11545 are separated by 19 nucleotidesHMPREF1078_RS11545 and HMPREF1078_RS11550 are separated by 47 nucleotides HMPREF1078_RS11540: HMPREF1078_RS11540 - M50 family metallopeptidase, at 247,145 to 248,284 _RS11540 HMPREF1078_RS11545: HMPREF1078_RS11545 - S41 family peptidase, at 248,304 to 249,995 _RS11545 HMPREF1078_RS11550: HMPREF1078_RS11550 - adenosine kinase, at 250,043 to 251,020 _RS11550 Position (kb) 248 249 250Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 247.326 kb on + strand, within HMPREF1078_RS11540at 247.338 kb on + strand, within HMPREF1078_RS11540at 247.338 kb on + strand, within HMPREF1078_RS11540at 247.351 kb on - strand, within HMPREF1078_RS11540at 247.359 kb on + strand, within HMPREF1078_RS11540at 247.360 kb on - strand, within HMPREF1078_RS11540at 247.366 kb on + strand, within HMPREF1078_RS11540at 247.366 kb on + strand, within HMPREF1078_RS11540at 247.405 kb on - strand, within HMPREF1078_RS11540at 247.405 kb on - strand, within HMPREF1078_RS11540at 247.485 kb on + strand, within HMPREF1078_RS11540at 247.485 kb on + strand, within HMPREF1078_RS11540at 247.485 kb on + strand, within HMPREF1078_RS11540at 247.564 kb on - strand, within HMPREF1078_RS11540at 247.604 kb on - strand, within HMPREF1078_RS11540at 247.604 kb on - strand, within HMPREF1078_RS11540at 247.604 kb on - strand, within HMPREF1078_RS11540at 247.628 kb on + strand, within HMPREF1078_RS11540at 247.629 kb on - strand, within HMPREF1078_RS11540at 247.629 kb on - strand, within HMPREF1078_RS11540at 247.630 kb on + strand, within HMPREF1078_RS11540at 247.630 kb on + strand, within HMPREF1078_RS11540at 247.631 kb on - strand, within HMPREF1078_RS11540at 247.697 kb on + strand, within HMPREF1078_RS11540at 247.697 kb on + strand, within HMPREF1078_RS11540at 247.697 kb on + strand, within HMPREF1078_RS11540at 247.697 kb on + strand, within HMPREF1078_RS11540at 247.697 kb on + strand, within HMPREF1078_RS11540at 247.824 kb on + strand, within HMPREF1078_RS11540at 247.824 kb on + strand, within HMPREF1078_RS11540at 247.825 kb on - strand, within HMPREF1078_RS11540at 247.825 kb on - strand, within HMPREF1078_RS11540at 247.859 kb on - strand, within HMPREF1078_RS11540at 247.859 kb on - strand, within HMPREF1078_RS11540at 248.107 kb on + strand, within HMPREF1078_RS11540at 248.130 kb on - strand, within HMPREF1078_RS11540at 248.153 kb on + strand, within HMPREF1078_RS11540at 248.296 kb on + strandat 248.307 kb on + strandat 248.307 kb on + strandat 248.307 kb on + strandat 248.308 kb on - strandat 248.308 kb on - strandat 248.308 kb on - strandat 248.313 kb on - strandat 248.313 kb on - strandat 248.325 kb on + strandat 248.356 kb on + strandat 248.356 kb on + strandat 248.357 kb on - strandat 248.357 kb on - strandat 248.358 kb on + strandat 248.358 kb on + strandat 248.358 kb on + strandat 248.457 kb on - strandat 248.531 kb on + strand, within HMPREF1078_RS11545at 248.532 kb on - strand, within HMPREF1078_RS11545at 248.572 kb on + strand, within HMPREF1078_RS11545at 248.573 kb on - strand, within HMPREF1078_RS11545at 248.652 kb on - strand, within HMPREF1078_RS11545at 248.656 kb on + strand, within HMPREF1078_RS11545at 248.657 kb on - strand, within HMPREF1078_RS11545at 248.657 kb on - strand, within HMPREF1078_RS11545at 248.776 kb on + strand, within HMPREF1078_RS11545at 248.864 kb on + strand, within HMPREF1078_RS11545at 248.864 kb on + strand, within HMPREF1078_RS11545at 248.871 kb on + strand, within HMPREF1078_RS11545at 248.930 kb on - strand, within HMPREF1078_RS11545at 248.946 kb on - strand, within HMPREF1078_RS11545at 248.965 kb on + strand, within HMPREF1078_RS11545at 248.966 kb on - strand, within HMPREF1078_RS11545at 248.966 kb on - strand, within HMPREF1078_RS11545at 248.969 kb on - strand, within HMPREF1078_RS11545at 249.001 kb on + strand, within HMPREF1078_RS11545at 249.002 kb on - strand, within HMPREF1078_RS11545at 249.002 kb on - strand, within HMPREF1078_RS11545at 249.179 kb on - strand, within HMPREF1078_RS11545at 249.245 kb on + strand, within HMPREF1078_RS11545at 249.246 kb on - strand, within HMPREF1078_RS11545at 249.315 kb on + strand, within HMPREF1078_RS11545at 249.378 kb on - strand, within HMPREF1078_RS11545at 249.391 kb on + strand, within HMPREF1078_RS11545at 249.392 kb on - strand, within HMPREF1078_RS11545at 249.392 kb on - strand, within HMPREF1078_RS11545at 249.395 kb on + strand, within HMPREF1078_RS11545at 249.395 kb on + strand, within HMPREF1078_RS11545at 249.395 kb on + strand, within HMPREF1078_RS11545at 249.395 kb on + strand, within HMPREF1078_RS11545at 249.395 kb on + strand, within HMPREF1078_RS11545at 249.395 kb on + strand, within HMPREF1078_RS11545at 249.397 kb on + strand, within HMPREF1078_RS11545at 249.398 kb on - strand, within HMPREF1078_RS11545at 249.398 kb on - strand, within HMPREF1078_RS11545at 249.402 kb on + strand, within HMPREF1078_RS11545at 249.402 kb on + strand, within HMPREF1078_RS11545at 249.403 kb on - strand, within HMPREF1078_RS11545at 249.403 kb on - strand, within HMPREF1078_RS11545at 249.424 kb on + strand, within HMPREF1078_RS11545at 249.425 kb on - strand, within HMPREF1078_RS11545at 249.427 kb on + strand, within HMPREF1078_RS11545at 249.427 kb on - strand, within HMPREF1078_RS11545at 249.428 kb on - strand, within HMPREF1078_RS11545at 249.431 kb on + strand, within HMPREF1078_RS11545at 249.432 kb on - strand, within HMPREF1078_RS11545at 249.491 kb on - strand, within HMPREF1078_RS11545at 249.502 kb on - strand, within HMPREF1078_RS11545at 249.502 kb on - strand, within HMPREF1078_RS11545at 249.657 kb on - strand, within HMPREF1078_RS11545at 249.660 kb on - strand, within HMPREF1078_RS11545at 249.660 kb on - strand, within HMPREF1078_RS11545at 249.660 kb on - strand, within HMPREF1078_RS11545at 249.660 kb on - strand, within HMPREF1078_RS11545at 249.660 kb on - strand, within HMPREF1078_RS11545at 249.661 kb on + strand, within HMPREF1078_RS11545at 249.661 kb on + strand, within HMPREF1078_RS11545at 249.661 kb on + strand, within HMPREF1078_RS11545at 249.662 kb on - strand, within HMPREF1078_RS11545at 249.662 kb on - strand, within HMPREF1078_RS11545at 249.691 kb on + strand, within HMPREF1078_RS11545at 249.692 kb on - strand, within HMPREF1078_RS11545at 249.692 kb on - strand, within HMPREF1078_RS11545at 249.692 kb on - strand, within HMPREF1078_RS11545at 249.692 kb on - strand, within HMPREF1078_RS11545at 249.770 kb on - strand, within HMPREF1078_RS11545at 249.786 kb on + strand, within HMPREF1078_RS11545at 249.786 kb on + strand, within HMPREF1078_RS11545at 249.786 kb on + strand, within HMPREF1078_RS11545at 249.878 kb on + strandat 249.879 kb on - strandat 249.879 kb on - strandat 249.891 kb on - strandat 249.992 kb on - strandat 249.992 kb on - strandat 249.995 kb on + strandat 249.995 kb on + strandat 249.996 kb on - strandat 250.000 kb on + strandat 250.008 kb on + strandat 250.021 kb on - strandat 250.026 kb on + strandat 250.026 kb on + strandat 250.028 kb on + strandat 250.030 kb on + strandat 250.030 kb on + strandat 250.031 kb on - strandat 250.052 kb on + strandat 250.052 kb on + strandat 250.055 kb on - strandat 250.055 kb on - strandat 250.055 kb on - strandat 250.055 kb on - strandat 250.057 kb on + strandat 250.112 kb on - strandat 250.122 kb on - strandat 250.148 kb on - strand, within HMPREF1078_RS11550at 250.305 kb on - strand, within HMPREF1078_RS11550at 250.416 kb on + strand, within HMPREF1078_RS11550at 250.416 kb on + strand, within HMPREF1078_RS11550at 250.436 kb on + strand, within HMPREF1078_RS11550at 250.437 kb on - strand, within HMPREF1078_RS11550at 250.439 kb on + strand, within HMPREF1078_RS11550at 250.475 kb on + strand, within HMPREF1078_RS11550at 250.555 kb on - strand, within HMPREF1078_RS11550at 250.565 kb on - strand, within HMPREF1078_RS11550at 250.571 kb on - strand, within HMPREF1078_RS11550at 250.652 kb on - strand, within HMPREF1078_RS11550at 250.696 kb on + strand, within HMPREF1078_RS11550at 250.728 kb on + strand, within HMPREF1078_RS11550at 250.756 kb on - strand, within HMPREF1078_RS11550at 250.784 kb on - strand, within HMPREF1078_RS11550at 250.784 kb on - strand, within HMPREF1078_RS11550at 250.789 kb on + strand, within HMPREF1078_RS11550at 250.789 kb on + strand, within HMPREF1078_RS11550at 250.790 kb on + strand, within HMPREF1078_RS11550at 250.790 kb on - strand, within HMPREF1078_RS11550at 250.894 kb on + strand, within HMPREF1078_RS11550at 250.918 kb on + strand, within HMPREF1078_RS11550at 250.938 kb on - strandat 250.944 kb on - strandat 250.955 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3
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247,326 + HMPREF1078_RS11540 0.16 +0.9
247,338 + HMPREF1078_RS11540 0.17 -0.0
247,338 + HMPREF1078_RS11540 0.17 -0.3
247,351 - HMPREF1078_RS11540 0.18 -2.5
247,359 + HMPREF1078_RS11540 0.19 +1.1
247,360 - HMPREF1078_RS11540 0.19 +0.7
247,366 + HMPREF1078_RS11540 0.19 -0.3
247,366 + HMPREF1078_RS11540 0.19 -0.6
247,405 - HMPREF1078_RS11540 0.23 +0.6
247,405 - HMPREF1078_RS11540 0.23 -0.3
247,485 + HMPREF1078_RS11540 0.30 -1.8
247,485 + HMPREF1078_RS11540 0.30 +0.4
247,485 + HMPREF1078_RS11540 0.30 -0.6
247,564 - HMPREF1078_RS11540 0.37 -0.9
247,604 - HMPREF1078_RS11540 0.40 -0.3
247,604 - HMPREF1078_RS11540 0.40 +1.5
247,604 - HMPREF1078_RS11540 0.40 -3.0
247,628 + HMPREF1078_RS11540 0.42 +2.8
247,629 - HMPREF1078_RS11540 0.42 -3.0
247,629 - HMPREF1078_RS11540 0.42 +0.1
247,630 + HMPREF1078_RS11540 0.43 +1.9
247,630 + HMPREF1078_RS11540 0.43 -1.3
247,631 - HMPREF1078_RS11540 0.43 +0.1
247,697 + HMPREF1078_RS11540 0.48 -0.6
247,697 + HMPREF1078_RS11540 0.48 -2.0
247,697 + HMPREF1078_RS11540 0.48 -2.8
247,697 + HMPREF1078_RS11540 0.48 -1.0
247,697 + HMPREF1078_RS11540 0.48 -0.7
247,824 + HMPREF1078_RS11540 0.60 -3.9
247,824 + HMPREF1078_RS11540 0.60 -2.4
247,825 - HMPREF1078_RS11540 0.60 -2.4
247,825 - HMPREF1078_RS11540 0.60 +1.4
247,859 - HMPREF1078_RS11540 0.63 -0.1
247,859 - HMPREF1078_RS11540 0.63 -1.5
248,107 + HMPREF1078_RS11540 0.84 +1.9
248,130 - HMPREF1078_RS11540 0.86 -1.7
248,153 + HMPREF1078_RS11540 0.88 -3.0
248,296 + +1.2
248,307 + -0.3
248,307 + -0.2
248,307 + -0.3
248,308 - +3.2
248,308 - +0.1
248,308 - -1.8
248,313 - +2.1
248,313 - +1.3
248,325 + -0.5
248,356 + -0.7
248,356 + -1.8
248,357 - +0.7
248,357 - -2.8
248,358 + -3.2
248,358 + -0.1
248,358 + +0.5
248,457 - -0.3
248,531 + HMPREF1078_RS11545 0.13 -0.9
248,532 - HMPREF1078_RS11545 0.13 -1.9
248,572 + HMPREF1078_RS11545 0.16 +0.5
248,573 - HMPREF1078_RS11545 0.16 -3.3
248,652 - HMPREF1078_RS11545 0.21 -2.5
248,656 + HMPREF1078_RS11545 0.21 -2.3
248,657 - HMPREF1078_RS11545 0.21 -3.1
248,657 - HMPREF1078_RS11545 0.21 -3.1
248,776 + HMPREF1078_RS11545 0.28 -3.7
248,864 + HMPREF1078_RS11545 0.33 -2.6
248,864 + HMPREF1078_RS11545 0.33 -2.0
248,871 + HMPREF1078_RS11545 0.34 -3.6
248,930 - HMPREF1078_RS11545 0.37 -1.2
248,946 - HMPREF1078_RS11545 0.38 -1.9
248,965 + HMPREF1078_RS11545 0.39 -2.4
248,966 - HMPREF1078_RS11545 0.39 -2.0
248,966 - HMPREF1078_RS11545 0.39 -0.9
248,969 - HMPREF1078_RS11545 0.39 -0.9
249,001 + HMPREF1078_RS11545 0.41 -1.8
249,002 - HMPREF1078_RS11545 0.41 -2.6
249,002 - HMPREF1078_RS11545 0.41 -2.3
249,179 - HMPREF1078_RS11545 0.52 -1.6
249,245 + HMPREF1078_RS11545 0.56 -0.7
249,246 - HMPREF1078_RS11545 0.56 -2.5
249,315 + HMPREF1078_RS11545 0.60 -1.6
249,378 - HMPREF1078_RS11545 0.63 -2.6
249,391 + HMPREF1078_RS11545 0.64 -2.7
249,392 - HMPREF1078_RS11545 0.64 -1.5
249,392 - HMPREF1078_RS11545 0.64 -0.3
249,395 + HMPREF1078_RS11545 0.64 -2.9
249,395 + HMPREF1078_RS11545 0.64 -2.6
249,395 + HMPREF1078_RS11545 0.64 -2.0
249,395 + HMPREF1078_RS11545 0.64 -1.9
249,395 + HMPREF1078_RS11545 0.64 -2.9
249,395 + HMPREF1078_RS11545 0.64 -1.8
249,397 + HMPREF1078_RS11545 0.65 -1.6
249,398 - HMPREF1078_RS11545 0.65 -1.3
249,398 - HMPREF1078_RS11545 0.65 -3.5
249,402 + HMPREF1078_RS11545 0.65 -3.0
249,402 + HMPREF1078_RS11545 0.65 -1.5
249,403 - HMPREF1078_RS11545 0.65 -4.3
249,403 - HMPREF1078_RS11545 0.65 -0.6
249,424 + HMPREF1078_RS11545 0.66 -1.3
249,425 - HMPREF1078_RS11545 0.66 -2.0
249,427 + HMPREF1078_RS11545 0.66 -2.7
249,427 - HMPREF1078_RS11545 0.66 -6.2
249,428 - HMPREF1078_RS11545 0.66 -3.0
249,431 + HMPREF1078_RS11545 0.67 -2.2
249,432 - HMPREF1078_RS11545 0.67 -1.0
249,491 - HMPREF1078_RS11545 0.70 -3.9
249,502 - HMPREF1078_RS11545 0.71 -0.7
249,502 - HMPREF1078_RS11545 0.71 -0.9
249,657 - HMPREF1078_RS11545 0.80 -3.7
249,660 - HMPREF1078_RS11545 0.80 -3.1
249,660 - HMPREF1078_RS11545 0.80 +0.5
249,660 - HMPREF1078_RS11545 0.80 -1.6
249,660 - HMPREF1078_RS11545 0.80 +0.1
249,660 - HMPREF1078_RS11545 0.80 -2.6
249,661 + HMPREF1078_RS11545 0.80 +0.1
249,661 + HMPREF1078_RS11545 0.80 -1.7
249,661 + HMPREF1078_RS11545 0.80 -1.0
249,662 - HMPREF1078_RS11545 0.80 -2.8
249,662 - HMPREF1078_RS11545 0.80 -0.9
249,691 + HMPREF1078_RS11545 0.82 -0.4
249,692 - HMPREF1078_RS11545 0.82 -3.1
249,692 - HMPREF1078_RS11545 0.82 -1.6
249,692 - HMPREF1078_RS11545 0.82 -1.2
249,692 - HMPREF1078_RS11545 0.82 +0.2
249,770 - HMPREF1078_RS11545 0.87 -2.3
249,786 + HMPREF1078_RS11545 0.88 -4.0
249,786 + HMPREF1078_RS11545 0.88 +0.5
249,786 + HMPREF1078_RS11545 0.88 -3.6
249,878 + +1.0
249,879 - -2.5
249,879 - -0.9
249,891 - -3.2
249,992 - -2.3
249,992 - -0.9
249,995 + -0.5
249,995 + +0.1
249,996 - -4.3
250,000 + -0.6
250,008 + -0.2
250,021 - -1.6
250,026 + -4.3
250,026 + -3.0
250,028 + -0.1
250,030 + -3.0
250,030 + -1.2
250,031 - -0.8
250,052 + -1.1
250,052 + -4.4
250,055 - -0.6
250,055 - -1.0
250,055 - -0.2
250,055 - +2.9
250,057 + -2.4
250,112 - -1.8
250,122 - +3.6
250,148 - HMPREF1078_RS11550 0.11 +0.1
250,305 - HMPREF1078_RS11550 0.27 +1.1
250,416 + HMPREF1078_RS11550 0.38 +1.6
250,416 + HMPREF1078_RS11550 0.38 -0.5
250,436 + HMPREF1078_RS11550 0.40 +0.4
250,437 - HMPREF1078_RS11550 0.40 +0.5
250,439 + HMPREF1078_RS11550 0.40 +0.6
250,475 + HMPREF1078_RS11550 0.44 +0.8
250,555 - HMPREF1078_RS11550 0.52 -0.2
250,565 - HMPREF1078_RS11550 0.53 +1.1
250,571 - HMPREF1078_RS11550 0.54 -3.4
250,652 - HMPREF1078_RS11550 0.62 +2.2
250,696 + HMPREF1078_RS11550 0.67 +1.5
250,728 + HMPREF1078_RS11550 0.70 -2.5
250,756 - HMPREF1078_RS11550 0.73 +0.5
250,784 - HMPREF1078_RS11550 0.76 +0.3
250,784 - HMPREF1078_RS11550 0.76 +1.3
250,789 + HMPREF1078_RS11550 0.76 +0.1
250,789 + HMPREF1078_RS11550 0.76 +1.7
250,790 + HMPREF1078_RS11550 0.76 +1.1
250,790 - HMPREF1078_RS11550 0.76 -2.2
250,894 + HMPREF1078_RS11550 0.87 -1.3
250,918 + HMPREF1078_RS11550 0.89 +1.7
250,938 - -2.5
250,944 - +0.9
250,955 + +1.2

Or see this region's nucleotide sequence