Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS11225 and HMPREF1078_RS11230 are separated by 53 nucleotides HMPREF1078_RS11230 and HMPREF1078_RS11235 are separated by 10 nucleotides
HMPREF1078_RS11225: HMPREF1078_RS11225 - sensor histidine kinase, at 165,753 to 167,639
_RS11225
HMPREF1078_RS11230: HMPREF1078_RS11230 - META domain-containing protein, at 167,693 to 168,136
_RS11230
HMPREF1078_RS11235: HMPREF1078_RS11235 - META domain-containing protein, at 168,147 to 168,572
_RS11235
Position (kb) 167
168
169 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 166.697 kb on - strand, within HMPREF1078_RS11225 at 166.697 kb on - strand, within HMPREF1078_RS11225 at 166.785 kb on + strand, within HMPREF1078_RS11225 at 166.787 kb on + strand, within HMPREF1078_RS11225 at 166.813 kb on + strand, within HMPREF1078_RS11225 at 166.813 kb on + strand, within HMPREF1078_RS11225 at 166.818 kb on + strand, within HMPREF1078_RS11225 at 166.819 kb on - strand, within HMPREF1078_RS11225 at 166.820 kb on + strand, within HMPREF1078_RS11225 at 166.824 kb on - strand, within HMPREF1078_RS11225 at 166.850 kb on - strand, within HMPREF1078_RS11225 at 166.850 kb on - strand, within HMPREF1078_RS11225 at 166.862 kb on + strand, within HMPREF1078_RS11225 at 166.881 kb on + strand, within HMPREF1078_RS11225 at 166.881 kb on + strand, within HMPREF1078_RS11225 at 166.882 kb on - strand, within HMPREF1078_RS11225 at 166.882 kb on - strand, within HMPREF1078_RS11225 at 166.887 kb on + strand, within HMPREF1078_RS11225 at 166.887 kb on + strand, within HMPREF1078_RS11225 at 166.965 kb on - strand, within HMPREF1078_RS11225 at 167.005 kb on + strand, within HMPREF1078_RS11225 at 167.018 kb on - strand, within HMPREF1078_RS11225 at 167.044 kb on + strand, within HMPREF1078_RS11225 at 167.045 kb on - strand, within HMPREF1078_RS11225 at 167.048 kb on - strand, within HMPREF1078_RS11225 at 167.096 kb on + strand, within HMPREF1078_RS11225 at 167.114 kb on + strand, within HMPREF1078_RS11225 at 167.136 kb on - strand, within HMPREF1078_RS11225 at 167.141 kb on + strand, within HMPREF1078_RS11225 at 167.141 kb on + strand, within HMPREF1078_RS11225 at 167.215 kb on + strand, within HMPREF1078_RS11225 at 167.226 kb on + strand, within HMPREF1078_RS11225 at 167.227 kb on - strand, within HMPREF1078_RS11225 at 167.227 kb on - strand, within HMPREF1078_RS11225 at 167.247 kb on - strand, within HMPREF1078_RS11225 at 167.247 kb on - strand, within HMPREF1078_RS11225 at 167.295 kb on - strand, within HMPREF1078_RS11225 at 167.305 kb on + strand, within HMPREF1078_RS11225 at 167.306 kb on - strand, within HMPREF1078_RS11225 at 167.387 kb on - strand, within HMPREF1078_RS11225 at 167.439 kb on - strand, within HMPREF1078_RS11225 at 167.736 kb on + strand at 167.738 kb on + strand, within HMPREF1078_RS11230 at 167.738 kb on + strand, within HMPREF1078_RS11230 at 167.739 kb on - strand, within HMPREF1078_RS11230 at 167.739 kb on - strand, within HMPREF1078_RS11230 at 167.739 kb on - strand, within HMPREF1078_RS11230 at 167.739 kb on - strand, within HMPREF1078_RS11230 at 167.771 kb on + strand, within HMPREF1078_RS11230 at 167.772 kb on - strand, within HMPREF1078_RS11230 at 167.795 kb on - strand, within HMPREF1078_RS11230 at 167.872 kb on + strand, within HMPREF1078_RS11230 at 167.873 kb on - strand, within HMPREF1078_RS11230 at 167.878 kb on + strand, within HMPREF1078_RS11230 at 167.878 kb on + strand, within HMPREF1078_RS11230 at 167.878 kb on + strand, within HMPREF1078_RS11230 at 167.879 kb on - strand, within HMPREF1078_RS11230 at 167.879 kb on - strand, within HMPREF1078_RS11230 at 167.879 kb on - strand, within HMPREF1078_RS11230 at 167.899 kb on - strand, within HMPREF1078_RS11230 at 168.022 kb on + strand, within HMPREF1078_RS11230 at 168.022 kb on + strand, within HMPREF1078_RS11230 at 168.031 kb on + strand, within HMPREF1078_RS11230 at 168.031 kb on + strand, within HMPREF1078_RS11230 at 168.032 kb on - strand, within HMPREF1078_RS11230 at 168.032 kb on - strand, within HMPREF1078_RS11230 at 168.032 kb on - strand, within HMPREF1078_RS11230 at 168.077 kb on - strand, within HMPREF1078_RS11230 at 168.077 kb on - strand, within HMPREF1078_RS11230 at 168.077 kb on - strand, within HMPREF1078_RS11230 at 168.120 kb on + strand at 168.120 kb on + strand at 168.120 kb on + strand at 168.120 kb on + strand at 168.120 kb on + strand at 168.120 kb on + strand at 168.120 kb on + strand at 168.120 kb on + strand at 168.120 kb on + strand at 168.120 kb on + strand at 168.120 kb on + strand at 168.121 kb on - strand at 168.121 kb on - strand at 168.121 kb on - strand at 168.121 kb on - strand at 168.121 kb on - strand at 168.121 kb on - strand at 168.121 kb on - strand at 168.121 kb on - strand at 168.121 kb on - strand at 168.121 kb on - strand at 168.126 kb on + strand at 168.126 kb on + strand at 168.127 kb on - strand at 168.127 kb on - strand at 168.127 kb on - strand at 168.127 kb on - strand at 168.148 kb on + strand at 168.296 kb on + strand, within HMPREF1078_RS11235 at 168.296 kb on + strand, within HMPREF1078_RS11235 at 168.296 kb on + strand, within HMPREF1078_RS11235 at 168.329 kb on + strand, within HMPREF1078_RS11235 at 168.365 kb on + strand, within HMPREF1078_RS11235 at 168.365 kb on + strand, within HMPREF1078_RS11235 at 168.366 kb on - strand, within HMPREF1078_RS11235 at 168.366 kb on - strand, within HMPREF1078_RS11235 at 168.368 kb on + strand, within HMPREF1078_RS11235 at 168.369 kb on - strand, within HMPREF1078_RS11235 at 168.369 kb on - strand, within HMPREF1078_RS11235 at 168.369 kb on - strand, within HMPREF1078_RS11235 at 168.369 kb on - strand, within HMPREF1078_RS11235 at 168.392 kb on + strand, within HMPREF1078_RS11235 at 168.396 kb on - strand, within HMPREF1078_RS11235 at 168.396 kb on - strand, within HMPREF1078_RS11235 at 168.396 kb on - strand, within HMPREF1078_RS11235 at 168.396 kb on - strand, within HMPREF1078_RS11235 at 168.404 kb on + strand, within HMPREF1078_RS11235 at 168.416 kb on + strand, within HMPREF1078_RS11235 at 168.453 kb on - strand, within HMPREF1078_RS11235 at 168.464 kb on + strand, within HMPREF1078_RS11235 at 168.474 kb on - strand, within HMPREF1078_RS11235 at 168.474 kb on - strand, within HMPREF1078_RS11235 at 168.474 kb on - strand, within HMPREF1078_RS11235 at 168.560 kb on + strand at 168.594 kb on + strand at 168.605 kb on - strand at 168.651 kb on + strand at 168.695 kb on + strand at 168.695 kb on + strand at 168.695 kb on + strand at 168.696 kb on - strand at 168.696 kb on - strand at 168.696 kb on - strand at 168.696 kb on - strand at 168.700 kb on + strand at 168.767 kb on - strand at 168.840 kb on + strand at 168.841 kb on - strand at 168.841 kb on - strand at 168.853 kb on + strand at 168.859 kb on + strand at 168.860 kb on - strand at 168.865 kb on - strand at 168.886 kb on - strand at 168.886 kb on - strand at 168.890 kb on + strand at 168.909 kb on + strand at 168.911 kb on + strand at 168.926 kb on - strand at 168.957 kb on + strand at 168.957 kb on + strand at 169.063 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 remove 166,697 - HMPREF1078_RS11225 0.50 -0.2 166,697 - HMPREF1078_RS11225 0.50 -0.9 166,785 + HMPREF1078_RS11225 0.55 +0.7 166,787 + HMPREF1078_RS11225 0.55 -0.6 166,813 + HMPREF1078_RS11225 0.56 -0.2 166,813 + HMPREF1078_RS11225 0.56 -1.0 166,818 + HMPREF1078_RS11225 0.56 +0.5 166,819 - HMPREF1078_RS11225 0.56 -1.7 166,820 + HMPREF1078_RS11225 0.57 +0.6 166,824 - HMPREF1078_RS11225 0.57 +0.1 166,850 - HMPREF1078_RS11225 0.58 -1.3 166,850 - HMPREF1078_RS11225 0.58 -1.3 166,862 + HMPREF1078_RS11225 0.59 -1.1 166,881 + HMPREF1078_RS11225 0.60 +0.3 166,881 + HMPREF1078_RS11225 0.60 -2.4 166,882 - HMPREF1078_RS11225 0.60 -0.3 166,882 - HMPREF1078_RS11225 0.60 +1.6 166,887 + HMPREF1078_RS11225 0.60 +0.9 166,887 + HMPREF1078_RS11225 0.60 -2.2 166,965 - HMPREF1078_RS11225 0.64 -0.4 167,005 + HMPREF1078_RS11225 0.66 +1.1 167,018 - HMPREF1078_RS11225 0.67 -0.4 167,044 + HMPREF1078_RS11225 0.68 +1.2 167,045 - HMPREF1078_RS11225 0.68 -1.8 167,048 - HMPREF1078_RS11225 0.69 +2.6 167,096 + HMPREF1078_RS11225 0.71 -1.3 167,114 + HMPREF1078_RS11225 0.72 -0.7 167,136 - HMPREF1078_RS11225 0.73 -1.2 167,141 + HMPREF1078_RS11225 0.74 +0.5 167,141 + HMPREF1078_RS11225 0.74 +0.7 167,215 + HMPREF1078_RS11225 0.77 +0.7 167,226 + HMPREF1078_RS11225 0.78 +2.2 167,227 - HMPREF1078_RS11225 0.78 -1.4 167,227 - HMPREF1078_RS11225 0.78 -0.2 167,247 - HMPREF1078_RS11225 0.79 -0.4 167,247 - HMPREF1078_RS11225 0.79 -0.3 167,295 - HMPREF1078_RS11225 0.82 -0.4 167,305 + HMPREF1078_RS11225 0.82 -1.4 167,306 - HMPREF1078_RS11225 0.82 -0.4 167,387 - HMPREF1078_RS11225 0.87 -1.1 167,439 - HMPREF1078_RS11225 0.89 +0.6 167,736 + +0.8 167,738 + HMPREF1078_RS11230 0.10 -1.0 167,738 + HMPREF1078_RS11230 0.10 +0.3 167,739 - HMPREF1078_RS11230 0.10 +1.3 167,739 - HMPREF1078_RS11230 0.10 +0.7 167,739 - HMPREF1078_RS11230 0.10 -1.9 167,739 - HMPREF1078_RS11230 0.10 +2.0 167,771 + HMPREF1078_RS11230 0.18 +1.4 167,772 - HMPREF1078_RS11230 0.18 -1.2 167,795 - HMPREF1078_RS11230 0.23 +3.1 167,872 + HMPREF1078_RS11230 0.40 -0.1 167,873 - HMPREF1078_RS11230 0.41 +1.6 167,878 + HMPREF1078_RS11230 0.42 +1.2 167,878 + HMPREF1078_RS11230 0.42 -0.7 167,878 + HMPREF1078_RS11230 0.42 -1.3 167,879 - HMPREF1078_RS11230 0.42 -0.1 167,879 - HMPREF1078_RS11230 0.42 +3.1 167,879 - HMPREF1078_RS11230 0.42 +0.5 167,899 - HMPREF1078_RS11230 0.46 +1.5 168,022 + HMPREF1078_RS11230 0.74 -0.7 168,022 + HMPREF1078_RS11230 0.74 -0.4 168,031 + HMPREF1078_RS11230 0.76 -0.3 168,031 + HMPREF1078_RS11230 0.76 -0.4 168,032 - HMPREF1078_RS11230 0.76 +1.1 168,032 - HMPREF1078_RS11230 0.76 +1.1 168,032 - HMPREF1078_RS11230 0.76 +1.1 168,077 - HMPREF1078_RS11230 0.86 -0.4 168,077 - HMPREF1078_RS11230 0.86 -0.2 168,077 - HMPREF1078_RS11230 0.86 +0.6 168,120 + +0.7 168,120 + -1.6 168,120 + +1.3 168,120 + +1.1 168,120 + +0.2 168,120 + -2.9 168,120 + +0.7 168,120 + +1.1 168,120 + -0.9 168,120 + -1.3 168,120 + +2.6 168,121 - -0.6 168,121 - -3.5 168,121 - -0.4 168,121 - +0.3 168,121 - -0.1 168,121 - +0.3 168,121 - -1.1 168,121 - +1.0 168,121 - -0.2 168,121 - -1.9 168,126 + +1.6 168,126 + -0.7 168,127 - +0.3 168,127 - -0.2 168,127 - -0.1 168,127 - -1.4 168,148 + -0.4 168,296 + HMPREF1078_RS11235 0.35 +0.0 168,296 + HMPREF1078_RS11235 0.35 +0.2 168,296 + HMPREF1078_RS11235 0.35 +4.0 168,329 + HMPREF1078_RS11235 0.43 -1.0 168,365 + HMPREF1078_RS11235 0.51 -1.1 168,365 + HMPREF1078_RS11235 0.51 -0.4 168,366 - HMPREF1078_RS11235 0.51 +0.6 168,366 - HMPREF1078_RS11235 0.51 +0.1 168,368 + HMPREF1078_RS11235 0.52 +0.3 168,369 - HMPREF1078_RS11235 0.52 +0.6 168,369 - HMPREF1078_RS11235 0.52 -2.7 168,369 - HMPREF1078_RS11235 0.52 -1.7 168,369 - HMPREF1078_RS11235 0.52 +1.4 168,392 + HMPREF1078_RS11235 0.58 +0.7 168,396 - HMPREF1078_RS11235 0.58 +0.2 168,396 - HMPREF1078_RS11235 0.58 -0.6 168,396 - HMPREF1078_RS11235 0.58 -1.6 168,396 - HMPREF1078_RS11235 0.58 -1.9 168,404 + HMPREF1078_RS11235 0.60 +0.3 168,416 + HMPREF1078_RS11235 0.63 -0.5 168,453 - HMPREF1078_RS11235 0.72 -1.6 168,464 + HMPREF1078_RS11235 0.74 -0.9 168,474 - HMPREF1078_RS11235 0.77 +0.7 168,474 - HMPREF1078_RS11235 0.77 +1.1 168,474 - HMPREF1078_RS11235 0.77 -0.4 168,560 + -1.0 168,594 + -0.9 168,605 - -0.5 168,651 + -2.0 168,695 + +1.2 168,695 + +0.6 168,695 + +0.7 168,696 - -0.2 168,696 - -2.9 168,696 - +1.9 168,696 - +0.4 168,700 + +0.1 168,767 - -1.9 168,840 + -0.3 168,841 - -2.2 168,841 - +0.6 168,853 + +0.7 168,859 + +2.0 168,860 - -1.2 168,865 - +0.1 168,886 - +0.2 168,886 - +1.2 168,890 + +0.6 168,909 + +1.3 168,911 + +1.0 168,926 - +2.0 168,957 + +0.6 168,957 + -0.2 169,063 + +2.1
Or see this region's nucleotide sequence