Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS11100

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS11090 and HMPREF1078_RS11095 are separated by 96 nucleotidesHMPREF1078_RS11095 and HMPREF1078_RS11100 are separated by 2 nucleotidesHMPREF1078_RS11100 and HMPREF1078_RS11105 are separated by 222 nucleotides HMPREF1078_RS11090: HMPREF1078_RS11090 - 6-phosphofructokinase, at 142,482 to 143,462 _RS11090 HMPREF1078_RS11095: HMPREF1078_RS11095 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 143,559 to 144,431 _RS11095 HMPREF1078_RS11100: HMPREF1078_RS11100 - (d)CMP kinase, at 144,434 to 145,126 _RS11100 HMPREF1078_RS11105: HMPREF1078_RS11105 - type IX secretion system protein PorQ, at 145,349 to 146,341 _RS11105 Position (kb) 144 145 146Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 143.445 kb on - strandat 143.445 kb on - strandat 143.450 kb on + strandat 143.451 kb on - strandat 143.457 kb on - strandat 143.457 kb on - strandat 143.462 kb on + strandat 143.462 kb on + strandat 143.463 kb on - strandat 143.463 kb on - strandat 143.463 kb on - strandat 143.463 kb on - strandat 143.472 kb on + strandat 143.473 kb on - strandat 143.478 kb on - strandat 143.480 kb on - strandat 143.480 kb on - strandat 143.504 kb on - strandat 143.554 kb on - strandat 144.436 kb on - strandat 144.509 kb on - strand, within HMPREF1078_RS11100at 144.509 kb on - strand, within HMPREF1078_RS11100at 144.682 kb on - strand, within HMPREF1078_RS11100at 144.682 kb on - strand, within HMPREF1078_RS11100at 144.801 kb on - strand, within HMPREF1078_RS11100at 144.877 kb on - strand, within HMPREF1078_RS11100at 144.922 kb on - strand, within HMPREF1078_RS11100at 144.997 kb on - strand, within HMPREF1078_RS11100at 145.034 kb on - strand, within HMPREF1078_RS11100at 145.036 kb on - strand, within HMPREF1078_RS11100at 145.036 kb on - strand, within HMPREF1078_RS11100at 145.036 kb on - strand, within HMPREF1078_RS11100at 145.036 kb on - strand, within HMPREF1078_RS11100at 145.036 kb on - strand, within HMPREF1078_RS11100at 145.036 kb on - strand, within HMPREF1078_RS11100at 145.036 kb on - strand, within HMPREF1078_RS11100at 145.040 kb on - strand, within HMPREF1078_RS11100at 145.040 kb on - strand, within HMPREF1078_RS11100at 145.040 kb on - strand, within HMPREF1078_RS11100at 145.042 kb on - strand, within HMPREF1078_RS11100at 145.042 kb on - strand, within HMPREF1078_RS11100at 145.112 kb on - strandat 145.112 kb on - strandat 145.116 kb on - strandat 145.116 kb on - strandat 145.131 kb on - strandat 145.131 kb on - strandat 145.135 kb on - strandat 145.137 kb on - strandat 145.137 kb on - strandat 145.160 kb on - strandat 145.160 kb on - strandat 145.161 kb on + strandat 145.188 kb on + strandat 145.265 kb on - strandat 145.352 kb on + strandat 145.367 kb on - strandat 145.407 kb on + strandat 145.484 kb on - strand, within HMPREF1078_RS11105at 145.522 kb on + strand, within HMPREF1078_RS11105at 145.523 kb on - strand, within HMPREF1078_RS11105at 145.558 kb on + strand, within HMPREF1078_RS11105at 145.560 kb on + strand, within HMPREF1078_RS11105at 145.561 kb on - strand, within HMPREF1078_RS11105at 145.561 kb on - strand, within HMPREF1078_RS11105at 145.561 kb on - strand, within HMPREF1078_RS11105at 145.616 kb on - strand, within HMPREF1078_RS11105at 145.618 kb on - strand, within HMPREF1078_RS11105at 145.629 kb on + strand, within HMPREF1078_RS11105at 145.629 kb on + strand, within HMPREF1078_RS11105at 145.638 kb on - strand, within HMPREF1078_RS11105at 145.641 kb on + strand, within HMPREF1078_RS11105at 145.641 kb on + strand, within HMPREF1078_RS11105at 145.641 kb on + strand, within HMPREF1078_RS11105at 145.641 kb on + strand, within HMPREF1078_RS11105at 145.641 kb on + strand, within HMPREF1078_RS11105at 145.641 kb on + strand, within HMPREF1078_RS11105at 145.642 kb on - strand, within HMPREF1078_RS11105at 145.642 kb on - strand, within HMPREF1078_RS11105at 145.642 kb on - strand, within HMPREF1078_RS11105at 145.665 kb on + strand, within HMPREF1078_RS11105at 145.784 kb on - strand, within HMPREF1078_RS11105at 145.828 kb on - strand, within HMPREF1078_RS11105at 145.868 kb on - strand, within HMPREF1078_RS11105at 145.935 kb on + strand, within HMPREF1078_RS11105at 145.936 kb on - strand, within HMPREF1078_RS11105at 146.068 kb on - strand, within HMPREF1078_RS11105at 146.068 kb on - strand, within HMPREF1078_RS11105at 146.108 kb on + strand, within HMPREF1078_RS11105at 146.110 kb on + strand, within HMPREF1078_RS11105at 146.110 kb on + strand, within HMPREF1078_RS11105at 146.111 kb on - strand, within HMPREF1078_RS11105at 146.111 kb on - strand, within HMPREF1078_RS11105at 146.111 kb on - strand, within HMPREF1078_RS11105at 146.111 kb on - strand, within HMPREF1078_RS11105at 146.111 kb on - strand, within HMPREF1078_RS11105at 146.112 kb on + strand, within HMPREF1078_RS11105

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3
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143,445 - +1.1
143,445 - -0.4
143,450 + -2.2
143,451 - -1.3
143,457 - +0.8
143,457 - -2.7
143,462 + -2.4
143,462 + +0.9
143,463 - -0.3
143,463 - -0.4
143,463 - +0.8
143,463 - -0.4
143,472 + +2.1
143,473 - +1.7
143,478 - -1.4
143,480 - -0.8
143,480 - +0.0
143,504 - -0.3
143,554 - -1.2
144,436 - -1.4
144,509 - HMPREF1078_RS11100 0.11 -2.3
144,509 - HMPREF1078_RS11100 0.11 +2.1
144,682 - HMPREF1078_RS11100 0.36 -1.3
144,682 - HMPREF1078_RS11100 0.36 -0.7
144,801 - HMPREF1078_RS11100 0.53 -2.9
144,877 - HMPREF1078_RS11100 0.64 -1.2
144,922 - HMPREF1078_RS11100 0.70 -2.4
144,997 - HMPREF1078_RS11100 0.81 -2.4
145,034 - HMPREF1078_RS11100 0.87 -3.3
145,036 - HMPREF1078_RS11100 0.87 -1.9
145,036 - HMPREF1078_RS11100 0.87 -1.6
145,036 - HMPREF1078_RS11100 0.87 -2.0
145,036 - HMPREF1078_RS11100 0.87 -1.6
145,036 - HMPREF1078_RS11100 0.87 +0.1
145,036 - HMPREF1078_RS11100 0.87 -1.0
145,036 - HMPREF1078_RS11100 0.87 -0.9
145,040 - HMPREF1078_RS11100 0.87 -2.7
145,040 - HMPREF1078_RS11100 0.87 -1.7
145,040 - HMPREF1078_RS11100 0.87 -1.3
145,042 - HMPREF1078_RS11100 0.88 -2.6
145,042 - HMPREF1078_RS11100 0.88 -1.9
145,112 - -1.2
145,112 - -2.4
145,116 - +0.1
145,116 - -0.7
145,131 - -0.1
145,131 - -0.1
145,135 - +0.9
145,137 - +2.6
145,137 - -1.2
145,160 - +0.8
145,160 - -0.9
145,161 + -1.3
145,188 + -0.1
145,265 - +0.5
145,352 + -5.6
145,367 - -3.2
145,407 + -1.2
145,484 - HMPREF1078_RS11105 0.14 -4.1
145,522 + HMPREF1078_RS11105 0.17 -3.0
145,523 - HMPREF1078_RS11105 0.18 -1.8
145,558 + HMPREF1078_RS11105 0.21 -3.7
145,560 + HMPREF1078_RS11105 0.21 -1.6
145,561 - HMPREF1078_RS11105 0.21 -0.7
145,561 - HMPREF1078_RS11105 0.21 +0.6
145,561 - HMPREF1078_RS11105 0.21 -2.2
145,616 - HMPREF1078_RS11105 0.27 -1.8
145,618 - HMPREF1078_RS11105 0.27 -3.3
145,629 + HMPREF1078_RS11105 0.28 -1.8
145,629 + HMPREF1078_RS11105 0.28 -2.9
145,638 - HMPREF1078_RS11105 0.29 -4.4
145,641 + HMPREF1078_RS11105 0.29 -1.8
145,641 + HMPREF1078_RS11105 0.29 -2.0
145,641 + HMPREF1078_RS11105 0.29 -0.4
145,641 + HMPREF1078_RS11105 0.29 -1.0
145,641 + HMPREF1078_RS11105 0.29 +2.1
145,641 + HMPREF1078_RS11105 0.29 -2.4
145,642 - HMPREF1078_RS11105 0.30 -1.7
145,642 - HMPREF1078_RS11105 0.30 -2.2
145,642 - HMPREF1078_RS11105 0.30 -1.9
145,665 + HMPREF1078_RS11105 0.32 -1.9
145,784 - HMPREF1078_RS11105 0.44 -2.5
145,828 - HMPREF1078_RS11105 0.48 -2.4
145,868 - HMPREF1078_RS11105 0.52 -0.2
145,935 + HMPREF1078_RS11105 0.59 -3.2
145,936 - HMPREF1078_RS11105 0.59 -1.9
146,068 - HMPREF1078_RS11105 0.72 -3.2
146,068 - HMPREF1078_RS11105 0.72 -2.9
146,108 + HMPREF1078_RS11105 0.76 -2.9
146,110 + HMPREF1078_RS11105 0.77 -0.7
146,110 + HMPREF1078_RS11105 0.77 -2.6
146,111 - HMPREF1078_RS11105 0.77 -1.4
146,111 - HMPREF1078_RS11105 0.77 -0.2
146,111 - HMPREF1078_RS11105 0.77 +0.1
146,111 - HMPREF1078_RS11105 0.77 -3.5
146,111 - HMPREF1078_RS11105 0.77 -1.9
146,112 + HMPREF1078_RS11105 0.77 -2.9

Or see this region's nucleotide sequence