Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS11045 and HMPREF1078_RS11050 are separated by 468 nucleotides HMPREF1078_RS11050 and HMPREF1078_RS11055 are separated by 136 nucleotides
HMPREF1078_RS11045: HMPREF1078_RS11045 - hypothetical protein, at 127,830 to 128,189
_RS11045
HMPREF1078_RS11050: HMPREF1078_RS11050 - aldose epimerase family protein, at 128,658 to 129,794
_RS11050
HMPREF1078_RS11055: HMPREF1078_RS11055 - thymidylate synthase, at 129,931 to 130,725
_RS11055
Position (kb) 128
129
130 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 127.709 kb on - strand at 127.766 kb on - strand at 127.771 kb on + strand at 127.775 kb on + strand at 127.775 kb on + strand at 127.784 kb on + strand at 127.802 kb on + strand at 127.804 kb on + strand at 127.804 kb on + strand at 127.804 kb on + strand at 127.804 kb on + strand at 127.804 kb on + strand at 127.805 kb on - strand at 127.805 kb on - strand at 127.805 kb on - strand at 127.808 kb on + strand at 127.808 kb on + strand at 127.809 kb on - strand at 127.809 kb on - strand at 127.825 kb on + strand at 127.825 kb on + strand at 127.832 kb on - strand at 127.945 kb on + strand, within HMPREF1078_RS11045 at 127.946 kb on - strand, within HMPREF1078_RS11045 at 127.956 kb on + strand, within HMPREF1078_RS11045 at 127.957 kb on - strand, within HMPREF1078_RS11045 at 127.957 kb on - strand, within HMPREF1078_RS11045 at 127.957 kb on - strand, within HMPREF1078_RS11045 at 127.957 kb on - strand, within HMPREF1078_RS11045 at 127.957 kb on - strand, within HMPREF1078_RS11045 at 127.987 kb on + strand, within HMPREF1078_RS11045 at 127.987 kb on + strand, within HMPREF1078_RS11045 at 127.987 kb on + strand, within HMPREF1078_RS11045 at 127.988 kb on - strand, within HMPREF1078_RS11045 at 127.988 kb on - strand, within HMPREF1078_RS11045 at 127.988 kb on - strand, within HMPREF1078_RS11045 at 128.007 kb on - strand, within HMPREF1078_RS11045 at 128.007 kb on - strand, within HMPREF1078_RS11045 at 128.090 kb on - strand, within HMPREF1078_RS11045 at 128.106 kb on + strand, within HMPREF1078_RS11045 at 128.106 kb on + strand, within HMPREF1078_RS11045 at 128.145 kb on + strand, within HMPREF1078_RS11045 at 128.148 kb on + strand, within HMPREF1078_RS11045 at 128.149 kb on - strand, within HMPREF1078_RS11045 at 128.190 kb on - strand at 128.198 kb on + strand at 128.199 kb on - strand at 128.199 kb on - strand at 128.199 kb on - strand at 128.233 kb on - strand at 128.235 kb on - strand at 128.237 kb on + strand at 128.260 kb on + strand at 128.269 kb on - strand at 128.310 kb on - strand at 128.312 kb on + strand at 128.332 kb on - strand at 128.336 kb on + strand at 128.336 kb on + strand at 128.337 kb on - strand at 128.338 kb on + strand at 128.348 kb on + strand at 128.348 kb on + strand at 128.348 kb on + strand at 128.348 kb on + strand at 128.349 kb on - strand at 128.350 kb on + strand at 128.350 kb on + strand at 128.350 kb on + strand at 128.351 kb on - strand at 128.351 kb on - strand at 128.352 kb on + strand at 128.352 kb on + strand at 128.352 kb on + strand at 128.353 kb on - strand at 128.353 kb on - strand at 128.353 kb on - strand at 128.354 kb on + strand at 128.354 kb on + strand at 128.354 kb on + strand at 128.355 kb on - strand at 128.380 kb on - strand at 128.382 kb on + strand at 128.382 kb on + strand at 128.382 kb on + strand at 128.382 kb on + strand at 128.383 kb on - strand at 128.383 kb on - strand at 128.383 kb on - strand at 128.426 kb on + strand at 128.434 kb on + strand at 128.435 kb on - strand at 128.492 kb on + strand at 128.492 kb on + strand at 128.492 kb on + strand at 128.492 kb on + strand at 128.493 kb on - strand at 128.549 kb on + strand at 128.650 kb on + strand at 128.650 kb on + strand at 128.651 kb on - strand at 128.651 kb on - strand at 128.654 kb on + strand at 128.655 kb on - strand at 128.655 kb on - strand at 128.655 kb on - strand at 128.678 kb on + strand at 128.679 kb on - strand at 128.679 kb on - strand at 128.681 kb on - strand at 128.681 kb on - strand at 128.681 kb on - strand at 128.681 kb on - strand at 128.681 kb on - strand at 128.682 kb on + strand at 128.683 kb on - strand at 128.683 kb on - strand at 128.683 kb on - strand at 128.683 kb on - strand at 128.685 kb on - strand at 128.685 kb on - strand at 128.685 kb on - strand at 128.685 kb on - strand at 128.698 kb on + strand at 128.759 kb on - strand at 128.808 kb on + strand, within HMPREF1078_RS11050 at 128.809 kb on - strand, within HMPREF1078_RS11050 at 128.820 kb on - strand, within HMPREF1078_RS11050 at 128.851 kb on + strand, within HMPREF1078_RS11050 at 128.878 kb on + strand, within HMPREF1078_RS11050 at 128.946 kb on - strand, within HMPREF1078_RS11050 at 128.946 kb on - strand, within HMPREF1078_RS11050 at 128.948 kb on + strand, within HMPREF1078_RS11050 at 128.963 kb on + strand, within HMPREF1078_RS11050 at 128.963 kb on + strand, within HMPREF1078_RS11050 at 128.964 kb on - strand, within HMPREF1078_RS11050 at 128.972 kb on - strand, within HMPREF1078_RS11050 at 128.986 kb on - strand, within HMPREF1078_RS11050 at 128.986 kb on - strand, within HMPREF1078_RS11050 at 129.011 kb on + strand, within HMPREF1078_RS11050 at 129.012 kb on - strand, within HMPREF1078_RS11050 at 129.012 kb on - strand, within HMPREF1078_RS11050 at 129.061 kb on - strand, within HMPREF1078_RS11050 at 129.109 kb on + strand, within HMPREF1078_RS11050 at 129.110 kb on - strand, within HMPREF1078_RS11050 at 129.110 kb on - strand, within HMPREF1078_RS11050 at 129.110 kb on - strand, within HMPREF1078_RS11050 at 129.110 kb on - strand, within HMPREF1078_RS11050 at 129.110 kb on - strand, within HMPREF1078_RS11050 at 129.110 kb on - strand, within HMPREF1078_RS11050 at 129.110 kb on - strand, within HMPREF1078_RS11050 at 129.110 kb on - strand, within HMPREF1078_RS11050 at 129.128 kb on + strand, within HMPREF1078_RS11050 at 129.128 kb on + strand, within HMPREF1078_RS11050 at 129.129 kb on - strand, within HMPREF1078_RS11050 at 129.131 kb on + strand, within HMPREF1078_RS11050 at 129.132 kb on - strand, within HMPREF1078_RS11050 at 129.132 kb on - strand, within HMPREF1078_RS11050 at 129.132 kb on - strand, within HMPREF1078_RS11050 at 129.179 kb on - strand, within HMPREF1078_RS11050 at 129.182 kb on + strand, within HMPREF1078_RS11050 at 129.183 kb on - strand, within HMPREF1078_RS11050 at 129.183 kb on - strand, within HMPREF1078_RS11050 at 129.230 kb on - strand, within HMPREF1078_RS11050 at 129.230 kb on - strand, within HMPREF1078_RS11050 at 129.265 kb on - strand, within HMPREF1078_RS11050 at 129.266 kb on - strand, within HMPREF1078_RS11050 at 129.266 kb on - strand, within HMPREF1078_RS11050 at 129.322 kb on + strand, within HMPREF1078_RS11050 at 129.323 kb on - strand, within HMPREF1078_RS11050 at 129.323 kb on - strand, within HMPREF1078_RS11050 at 129.375 kb on - strand, within HMPREF1078_RS11050 at 129.380 kb on - strand, within HMPREF1078_RS11050 at 129.380 kb on - strand, within HMPREF1078_RS11050 at 129.506 kb on + strand, within HMPREF1078_RS11050 at 129.507 kb on - strand, within HMPREF1078_RS11050 at 129.507 kb on - strand, within HMPREF1078_RS11050 at 129.527 kb on - strand, within HMPREF1078_RS11050 at 129.527 kb on - strand, within HMPREF1078_RS11050 at 129.527 kb on - strand, within HMPREF1078_RS11050 at 129.544 kb on + strand, within HMPREF1078_RS11050 at 129.598 kb on - strand, within HMPREF1078_RS11050 at 129.658 kb on + strand, within HMPREF1078_RS11050 at 129.658 kb on + strand, within HMPREF1078_RS11050 at 129.658 kb on + strand, within HMPREF1078_RS11050 at 129.658 kb on + strand, within HMPREF1078_RS11050 at 129.658 kb on + strand, within HMPREF1078_RS11050 at 129.659 kb on - strand, within HMPREF1078_RS11050 at 129.659 kb on - strand, within HMPREF1078_RS11050 at 129.659 kb on - strand, within HMPREF1078_RS11050 at 129.660 kb on + strand, within HMPREF1078_RS11050 at 129.660 kb on + strand, within HMPREF1078_RS11050 at 129.660 kb on + strand, within HMPREF1078_RS11050 at 129.660 kb on + strand, within HMPREF1078_RS11050 at 129.660 kb on + strand, within HMPREF1078_RS11050 at 129.661 kb on - strand, within HMPREF1078_RS11050 at 129.661 kb on - strand, within HMPREF1078_RS11050 at 129.661 kb on - strand, within HMPREF1078_RS11050 at 129.661 kb on - strand, within HMPREF1078_RS11050 at 129.661 kb on - strand, within HMPREF1078_RS11050 at 129.779 kb on + strand at 129.779 kb on + strand at 129.779 kb on + strand at 129.779 kb on + strand at 129.779 kb on + strand at 129.779 kb on + strand at 129.779 kb on + strand at 129.779 kb on + strand at 129.780 kb on - strand at 129.780 kb on - strand at 129.780 kb on - strand at 129.780 kb on - strand at 129.780 kb on - strand at 129.780 kb on - strand at 129.780 kb on - strand at 129.780 kb on - strand at 129.780 kb on - strand at 129.780 kb on - strand at 129.780 kb on - strand at 129.780 kb on - strand at 129.780 kb on - strand at 129.783 kb on + strand at 129.783 kb on + strand at 129.783 kb on + strand at 129.784 kb on - strand at 129.784 kb on - strand at 129.784 kb on - strand at 129.784 kb on - strand at 129.784 kb on - strand at 129.784 kb on - strand at 129.798 kb on - strand at 129.805 kb on - strand at 129.807 kb on + strand at 129.807 kb on + strand at 129.823 kb on - strand at 129.837 kb on + strand at 129.847 kb on + strand at 129.847 kb on + strand at 130.723 kb on + strand at 130.764 kb on + strand at 130.766 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 remove 127,709 - -1.9 127,766 - +0.7 127,771 + +1.6 127,775 + +0.4 127,775 + +1.0 127,784 + +0.4 127,802 + +0.8 127,804 + -1.3 127,804 + -0.5 127,804 + -1.9 127,804 + -0.3 127,804 + +0.1 127,805 - +1.7 127,805 - -0.0 127,805 - +0.7 127,808 + +0.1 127,808 + -0.5 127,809 - -1.6 127,809 - +2.6 127,825 + -0.9 127,825 + +0.9 127,832 - +1.5 127,945 + HMPREF1078_RS11045 0.32 +3.1 127,946 - HMPREF1078_RS11045 0.32 -0.7 127,956 + HMPREF1078_RS11045 0.35 -1.6 127,957 - HMPREF1078_RS11045 0.35 -0.2 127,957 - HMPREF1078_RS11045 0.35 +1.3 127,957 - HMPREF1078_RS11045 0.35 +3.5 127,957 - HMPREF1078_RS11045 0.35 +1.5 127,957 - HMPREF1078_RS11045 0.35 +0.0 127,987 + HMPREF1078_RS11045 0.44 -2.2 127,987 + HMPREF1078_RS11045 0.44 +0.8 127,987 + HMPREF1078_RS11045 0.44 +2.4 127,988 - HMPREF1078_RS11045 0.44 -0.8 127,988 - HMPREF1078_RS11045 0.44 -0.0 127,988 - HMPREF1078_RS11045 0.44 +0.5 128,007 - HMPREF1078_RS11045 0.49 +0.1 128,007 - HMPREF1078_RS11045 0.49 +0.2 128,090 - HMPREF1078_RS11045 0.72 -0.8 128,106 + HMPREF1078_RS11045 0.77 +0.4 128,106 + HMPREF1078_RS11045 0.77 +0.1 128,145 + HMPREF1078_RS11045 0.88 -3.7 128,148 + HMPREF1078_RS11045 0.88 +0.3 128,149 - HMPREF1078_RS11045 0.89 +0.6 128,190 - +0.3 128,198 + -3.0 128,199 - +0.8 128,199 - +1.2 128,199 - -0.1 128,233 - +0.7 128,235 - +3.6 128,237 + -0.6 128,260 + +1.3 128,269 - -0.1 128,310 - +1.1 128,312 + +0.1 128,332 - +0.9 128,336 + +0.1 128,336 + +0.4 128,337 - -5.2 128,338 + +0.4 128,348 + +0.3 128,348 + -0.0 128,348 + -0.4 128,348 + +0.8 128,349 - -0.5 128,350 + -2.9 128,350 + +0.4 128,350 + -1.7 128,351 - -1.0 128,351 - -1.6 128,352 + -3.1 128,352 + -0.6 128,352 + -0.7 128,353 - +2.1 128,353 - -0.4 128,353 - +2.2 128,354 + -0.6 128,354 + +0.0 128,354 + +1.2 128,355 - +2.7 128,380 - -0.0 128,382 + +1.3 128,382 + -2.4 128,382 + +0.9 128,382 + -1.9 128,383 - +2.2 128,383 - -3.2 128,383 - +1.4 128,426 + +1.8 128,434 + -0.6 128,435 - +0.1 128,492 + -1.7 128,492 + -3.5 128,492 + -1.0 128,492 + -0.6 128,493 - +2.1 128,549 + +2.3 128,650 + +1.0 128,650 + -4.5 128,651 - +1.2 128,651 - +2.3 128,654 + -0.9 128,655 - -3.1 128,655 - +0.1 128,655 - +2.3 128,678 + +1.0 128,679 - +1.3 128,679 - -0.7 128,681 - -0.9 128,681 - +1.3 128,681 - -0.9 128,681 - -1.3 128,681 - -0.8 128,682 + +0.7 128,683 - +1.5 128,683 - +0.4 128,683 - +0.9 128,683 - -2.1 128,685 - +1.7 128,685 - +1.5 128,685 - +0.7 128,685 - -2.2 128,698 + -0.1 128,759 - +1.8 128,808 + HMPREF1078_RS11050 0.13 -0.6 128,809 - HMPREF1078_RS11050 0.13 +0.4 128,820 - HMPREF1078_RS11050 0.14 +0.6 128,851 + HMPREF1078_RS11050 0.17 -0.7 128,878 + HMPREF1078_RS11050 0.19 -3.5 128,946 - HMPREF1078_RS11050 0.25 -0.9 128,946 - HMPREF1078_RS11050 0.25 +0.9 128,948 + HMPREF1078_RS11050 0.26 -1.9 128,963 + HMPREF1078_RS11050 0.27 +0.8 128,963 + HMPREF1078_RS11050 0.27 -0.2 128,964 - HMPREF1078_RS11050 0.27 +0.7 128,972 - HMPREF1078_RS11050 0.28 +1.1 128,986 - HMPREF1078_RS11050 0.29 -3.5 128,986 - HMPREF1078_RS11050 0.29 +1.6 129,011 + HMPREF1078_RS11050 0.31 +2.2 129,012 - HMPREF1078_RS11050 0.31 +0.9 129,012 - HMPREF1078_RS11050 0.31 -0.4 129,061 - HMPREF1078_RS11050 0.35 -4.7 129,109 + HMPREF1078_RS11050 0.40 -1.1 129,110 - HMPREF1078_RS11050 0.40 -1.8 129,110 - HMPREF1078_RS11050 0.40 -0.2 129,110 - HMPREF1078_RS11050 0.40 +1.3 129,110 - HMPREF1078_RS11050 0.40 +1.4 129,110 - HMPREF1078_RS11050 0.40 -0.7 129,110 - HMPREF1078_RS11050 0.40 -0.4 129,110 - HMPREF1078_RS11050 0.40 +0.6 129,110 - HMPREF1078_RS11050 0.40 +1.5 129,128 + HMPREF1078_RS11050 0.41 +1.9 129,128 + HMPREF1078_RS11050 0.41 -1.8 129,129 - HMPREF1078_RS11050 0.41 +0.2 129,131 + HMPREF1078_RS11050 0.42 +0.1 129,132 - HMPREF1078_RS11050 0.42 +0.8 129,132 - HMPREF1078_RS11050 0.42 +0.4 129,132 - HMPREF1078_RS11050 0.42 +1.3 129,179 - HMPREF1078_RS11050 0.46 -2.8 129,182 + HMPREF1078_RS11050 0.46 +1.0 129,183 - HMPREF1078_RS11050 0.46 +0.7 129,183 - HMPREF1078_RS11050 0.46 +1.4 129,230 - HMPREF1078_RS11050 0.50 -0.7 129,230 - HMPREF1078_RS11050 0.50 -1.4 129,265 - HMPREF1078_RS11050 0.53 -1.2 129,266 - HMPREF1078_RS11050 0.53 -1.0 129,266 - HMPREF1078_RS11050 0.53 +1.0 129,322 + HMPREF1078_RS11050 0.58 +2.1 129,323 - HMPREF1078_RS11050 0.58 -1.9 129,323 - HMPREF1078_RS11050 0.58 +0.5 129,375 - HMPREF1078_RS11050 0.63 -0.5 129,380 - HMPREF1078_RS11050 0.64 -2.0 129,380 - HMPREF1078_RS11050 0.64 +0.1 129,506 + HMPREF1078_RS11050 0.75 -0.5 129,507 - HMPREF1078_RS11050 0.75 +2.0 129,507 - HMPREF1078_RS11050 0.75 +1.0 129,527 - HMPREF1078_RS11050 0.76 +1.0 129,527 - HMPREF1078_RS11050 0.76 -3.4 129,527 - HMPREF1078_RS11050 0.76 +1.1 129,544 + HMPREF1078_RS11050 0.78 -3.5 129,598 - HMPREF1078_RS11050 0.83 -0.0 129,658 + HMPREF1078_RS11050 0.88 +2.2 129,658 + HMPREF1078_RS11050 0.88 -1.4 129,658 + HMPREF1078_RS11050 0.88 +0.6 129,658 + HMPREF1078_RS11050 0.88 +0.5 129,658 + HMPREF1078_RS11050 0.88 +0.4 129,659 - HMPREF1078_RS11050 0.88 +0.6 129,659 - HMPREF1078_RS11050 0.88 -0.6 129,659 - HMPREF1078_RS11050 0.88 +0.3 129,660 + HMPREF1078_RS11050 0.88 +2.1 129,660 + HMPREF1078_RS11050 0.88 +0.0 129,660 + HMPREF1078_RS11050 0.88 -0.1 129,660 + HMPREF1078_RS11050 0.88 +0.8 129,660 + HMPREF1078_RS11050 0.88 +3.4 129,661 - HMPREF1078_RS11050 0.88 +2.1 129,661 - HMPREF1078_RS11050 0.88 -0.4 129,661 - HMPREF1078_RS11050 0.88 +0.8 129,661 - HMPREF1078_RS11050 0.88 -0.6 129,661 - HMPREF1078_RS11050 0.88 -0.3 129,779 + +2.0 129,779 + +2.2 129,779 + -1.0 129,779 + -0.3 129,779 + -1.7 129,779 + -0.5 129,779 + -1.4 129,779 + +1.4 129,780 - +0.9 129,780 - -0.0 129,780 - -0.5 129,780 - +2.1 129,780 - -0.9 129,780 - +1.8 129,780 - -0.7 129,780 - +2.0 129,780 - +0.2 129,780 - +0.6 129,780 - -2.8 129,780 - -3.0 129,780 - +1.1 129,783 + -1.1 129,783 + -1.0 129,783 + +0.5 129,784 - +0.1 129,784 - +0.0 129,784 - -3.2 129,784 - -0.7 129,784 - +1.0 129,784 - +1.0 129,798 - +0.1 129,805 - -1.7 129,807 + -1.7 129,807 + -0.3 129,823 - -0.4 129,837 + +0.4 129,847 + -0.7 129,847 + -0.9 130,723 + +1.1 130,764 + -1.9 130,766 + +1.4
Or see this region's nucleotide sequence