Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS11005

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3
112,859	+				-0.7
112,860	-				-1.0
112,930	+				+2.5
112,930	+				-2.2
112,933	+				+0.4
112,937	+				-0.4
112,944	+				+2.0
112,944	+				-1.9
112,944	+				+0.7
112,945	-				-0.2
112,962	+				-1.6
112,972	-				+2.1
112,975	+				+1.6
112,975	+				-2.9
112,976	-				+1.4
113,120	+		HMPREF1078_RS11000	0.33	-0.3
113,120	+		HMPREF1078_RS11000	0.33	+2.3
113,120	+		HMPREF1078_RS11000	0.33	+0.1
113,120	+		HMPREF1078_RS11000	0.33	+0.7
113,178	+		HMPREF1078_RS11000	0.45	-3.8
113,179	-		HMPREF1078_RS11000	0.45	+0.2
113,182	+		HMPREF1078_RS11000	0.45	+0.9
113,182	+		HMPREF1078_RS11000	0.45	+1.1
113,182	+		HMPREF1078_RS11000	0.45	-1.5
113,182	+		HMPREF1078_RS11000	0.45	-1.0
113,183	-		HMPREF1078_RS11000	0.46	+1.1
113,183	-		HMPREF1078_RS11000	0.46	-0.5
113,183	-		HMPREF1078_RS11000	0.46	+0.5
113,300	+		HMPREF1078_RS11000	0.68	+0.3
113,301	-		HMPREF1078_RS11000	0.68	+0.3
113,304	+		HMPREF1078_RS11000	0.69	+0.8
113,304	+		HMPREF1078_RS11000	0.69	+1.1
113,304	+		HMPREF1078_RS11000	0.69	+1.6
113,304	+		HMPREF1078_RS11000	0.69	+3.5
113,305	-		HMPREF1078_RS11000	0.69	-4.6
113,305	-		HMPREF1078_RS11000	0.69	+0.5
113,305	-		HMPREF1078_RS11000	0.69	-3.0
113,305	-		HMPREF1078_RS11000	0.69	-2.4
113,314	-		HMPREF1078_RS11000	0.71	-0.7
113,454	+				+0.5
113,456	+				-1.0
113,457	-				-0.9
113,457	-				-1.2
113,457	-				+1.7
113,457	-				-0.5
113,461	+				+0.6
113,462	-				+3.0
113,476	-				-2.3
113,497	+				+0.6
113,498	-				+0.6
113,498	-				-2.0
113,499	+				-2.0
113,511	+				-0.6
113,511	+				-0.9
113,511	+				-1.7
113,511	+				+0.0
113,511	+				-1.7
113,511	+				-0.7
113,512	-				-3.3
113,512	-				-1.0
113,512	-				-2.9
113,513	+				+0.2
113,513	+				+0.0
113,514	-				-1.3
113,514	-				-1.4
113,515	+				+2.6
113,515	+				-1.3
113,515	+				+0.5
113,515	+				+0.6
113,516	-				+0.1
113,516	-				-2.4
113,516	-				-3.2
113,516	-				-0.2
113,517	+				-0.2
113,517	+				+0.9
113,517	+				+1.4
113,517	+				-0.6
113,517	+				-1.8
113,517	+				+1.6
113,518	-				-1.9
113,518	-				-2.1
113,518	-				-1.3
113,518	-				-1.7
113,518	-				+0.6
113,518	-				-1.0
113,518	-				-1.9
113,518	-				-3.2
113,518	-				-2.2
113,519	+				-0.1
113,520	-				-1.0
113,525	+				-1.2
113,525	+				+0.2
113,528	+				+0.6
113,531	-				-3.0
113,538	-				-0.6
113,556	+				-1.2
113,560	+				-3.1
113,560	+				-2.6
113,560	+				-2.5
113,574	+				+0.1
113,643	+				-2.4
113,662	+				-3.1
113,662	+				-1.6
113,705	+				-1.4
113,750	+				-2.7
113,752	+				-0.2
113,752	+				-1.0
113,752	+				-2.2
113,752	+				-3.7
113,753	-				-1.7
113,753	-				-1.2
113,753	-				-1.3
113,753	-				-2.7
113,763	-				-4.2
113,858	+		HMPREF1078_RS11005	0.10	-2.0
113,859	-		HMPREF1078_RS11005	0.10	-3.2
113,940	+		HMPREF1078_RS11005	0.13	-2.8
113,941	-		HMPREF1078_RS11005	0.13	-3.0
113,941	-		HMPREF1078_RS11005	0.13	-3.2
113,963	+		HMPREF1078_RS11005	0.14	-2.9
113,964	-		HMPREF1078_RS11005	0.14	-2.3
114,056	+		HMPREF1078_RS11005	0.17	-3.3
114,056	+		HMPREF1078_RS11005	0.17	-3.0
114,056	+		HMPREF1078_RS11005	0.17	-3.3
114,056	+		HMPREF1078_RS11005	0.17	-3.1
114,057	-		HMPREF1078_RS11005	0.17	-0.4
114,057	-		HMPREF1078_RS11005	0.17	-1.4
114,057	-		HMPREF1078_RS11005	0.17	-1.9
114,058	+		HMPREF1078_RS11005	0.17	-2.1
114,059	-		HMPREF1078_RS11005	0.17	-2.9
114,074	+		HMPREF1078_RS11005	0.18	-4.4
114,074	+		HMPREF1078_RS11005	0.18	-3.2
114,075	-		HMPREF1078_RS11005	0.18	-1.4
114,075	-		HMPREF1078_RS11005	0.18	+0.6
114,077	+		HMPREF1078_RS11005	0.18	-2.6
114,077	+		HMPREF1078_RS11005	0.18	+0.6
114,077	+		HMPREF1078_RS11005	0.18	-3.0
114,078	-		HMPREF1078_RS11005	0.18	-3.3
114,078	-		HMPREF1078_RS11005	0.18	-2.4
114,078	-		HMPREF1078_RS11005	0.18	-1.8
114,078	-		HMPREF1078_RS11005	0.18	-3.1
114,111	-		HMPREF1078_RS11005	0.19	+0.6
114,111	-		HMPREF1078_RS11005	0.19	-0.9
114,176	+		HMPREF1078_RS11005	0.21	+0.0
114,176	+		HMPREF1078_RS11005	0.21	-2.9
114,176	+		HMPREF1078_RS11005	0.21	-2.5
114,177	-		HMPREF1078_RS11005	0.21	-1.7
114,177	-		HMPREF1078_RS11005	0.21	+0.1
114,179	+		HMPREF1078_RS11005	0.21	+0.3
114,179	+		HMPREF1078_RS11005	0.21	-2.0
114,179	+		HMPREF1078_RS11005	0.21	-0.4
114,194	+		HMPREF1078_RS11005	0.22	-3.4
114,212	+		HMPREF1078_RS11005	0.22	-0.7
114,222	+		HMPREF1078_RS11005	0.23	-2.9
114,252	+		HMPREF1078_RS11005	0.24	-3.0
114,252	+		HMPREF1078_RS11005	0.24	-1.3
114,253	-		HMPREF1078_RS11005	0.24	+0.5
114,254	+		HMPREF1078_RS11005	0.24	-1.8
114,284	+		HMPREF1078_RS11005	0.25	-3.1
114,305	+		HMPREF1078_RS11005	0.25	-2.9
114,305	+		HMPREF1078_RS11005	0.25	-1.8
114,305	+		HMPREF1078_RS11005	0.25	-2.9
114,305	+		HMPREF1078_RS11005	0.25	-3.6
114,306	-		HMPREF1078_RS11005	0.25	-2.2
114,306	-		HMPREF1078_RS11005	0.25	-1.0
114,306	-		HMPREF1078_RS11005	0.25	-2.9
114,306	-		HMPREF1078_RS11005	0.25	-1.3
114,316	-		HMPREF1078_RS11005	0.26	-0.8
114,353	+		HMPREF1078_RS11005	0.27	-0.1
114,354	-		HMPREF1078_RS11005	0.27	-2.0
114,364	+		HMPREF1078_RS11005	0.27	-0.9
114,392	+		HMPREF1078_RS11005	0.28	-3.2
114,392	+		HMPREF1078_RS11005	0.28	-0.7
114,405	+		HMPREF1078_RS11005	0.29	-2.9
114,405	+		HMPREF1078_RS11005	0.29	-2.4
114,405	+		HMPREF1078_RS11005	0.29	-2.2
114,406	-		HMPREF1078_RS11005	0.29	-1.3
114,406	-		HMPREF1078_RS11005	0.29	-3.5
114,406	-		HMPREF1078_RS11005	0.29	-1.6
114,411	-		HMPREF1078_RS11005	0.29	-3.6
114,418	+		HMPREF1078_RS11005	0.29	-3.2
114,428	+		HMPREF1078_RS11005	0.29	-2.8
114,437	-		HMPREF1078_RS11005	0.30	-1.6
114,462	+		HMPREF1078_RS11005	0.31	-2.4
114,495	-		HMPREF1078_RS11005	0.32	-2.3
114,500	+		HMPREF1078_RS11005	0.32	-3.3
114,516	-		HMPREF1078_RS11005	0.32	-1.0
114,591	+		HMPREF1078_RS11005	0.35	-2.0
114,608	+		HMPREF1078_RS11005	0.35	-3.1
114,609	-		HMPREF1078_RS11005	0.35	-0.7
114,643	+		HMPREF1078_RS11005	0.37	-2.4
114,644	-		HMPREF1078_RS11005	0.37	-3.0
114,923	+		HMPREF1078_RS11005	0.46	-3.3
114,950	+		HMPREF1078_RS11005	0.47	-0.5
114,950	+		HMPREF1078_RS11005	0.47	-0.8
114,971	+		HMPREF1078_RS11005	0.47	-4.3
114,975	-		HMPREF1078_RS11005	0.48	-1.4
115,019	+		HMPREF1078_RS11005	0.49	-0.8
115,030	+		HMPREF1078_RS11005	0.49	-2.6
115,055	+		HMPREF1078_RS11005	0.50	-2.9
115,055	+		HMPREF1078_RS11005	0.50	-0.7
115,055	+		HMPREF1078_RS11005	0.50	+2.1
115,055	+		HMPREF1078_RS11005	0.50	-4.8
115,056	-		HMPREF1078_RS11005	0.50	+0.1
115,056	-		HMPREF1078_RS11005	0.50	-2.4
115,056	-		HMPREF1078_RS11005	0.50	-2.9
115,056	-		HMPREF1078_RS11005	0.50	-0.4
115,056	-		HMPREF1078_RS11005	0.50	-2.6
115,056	-		HMPREF1078_RS11005	0.50	-2.2
115,068	-		HMPREF1078_RS11005	0.51	-1.0
115,068	-		HMPREF1078_RS11005	0.51	-1.4
115,070	+		HMPREF1078_RS11005	0.51	-2.3
115,070	+		HMPREF1078_RS11005	0.51	+0.3
115,070	+		HMPREF1078_RS11005	0.51	-0.8
115,070	+		HMPREF1078_RS11005	0.51	-0.4
115,071	-		HMPREF1078_RS11005	0.51	-0.2
115,071	-		HMPREF1078_RS11005	0.51	-0.7
115,073	-		HMPREF1078_RS11005	0.51	-2.2
115,077	+		HMPREF1078_RS11005	0.51	-3.1
115,078	-		HMPREF1078_RS11005	0.51	-1.9
115,083	-		HMPREF1078_RS11005	0.51	-3.4
115,088	+		HMPREF1078_RS11005	0.51	-2.9
115,089	-		HMPREF1078_RS11005	0.51	-2.5
115,107	-		HMPREF1078_RS11005	0.52	-1.8
115,136	+		HMPREF1078_RS11005	0.53	-2.9
115,153	+		HMPREF1078_RS11005	0.54	-2.1
115,311	+		HMPREF1078_RS11005	0.59	-1.6
115,312	-		HMPREF1078_RS11005	0.59	-1.4
115,329	-		HMPREF1078_RS11005	0.59	-3.3
115,331	-		HMPREF1078_RS11005	0.59	-2.2
115,386	-		HMPREF1078_RS11005	0.61	-3.3
115,386	-		HMPREF1078_RS11005	0.61	-2.2
115,390	-		HMPREF1078_RS11005	0.61	-3.4
115,421	+		HMPREF1078_RS11005	0.62	-0.5
115,421	+		HMPREF1078_RS11005	0.62	-0.9
115,421	+		HMPREF1078_RS11005	0.62	-2.0
115,527	+		HMPREF1078_RS11005	0.66	-1.7
115,531	+		HMPREF1078_RS11005	0.66	-3.2
115,532	+		HMPREF1078_RS11005	0.66	-2.3
115,533	-		HMPREF1078_RS11005	0.66	-1.9
115,535	+		HMPREF1078_RS11005	0.66	+0.5
115,536	-		HMPREF1078_RS11005	0.66	-0.9
115,536	-		HMPREF1078_RS11005	0.66	+0.1
115,592	+		HMPREF1078_RS11005	0.68	-1.9
115,643	+		HMPREF1078_RS11005	0.70	-2.1
115,643	+		HMPREF1078_RS11005	0.70	-1.9
115,679	+		HMPREF1078_RS11005	0.71	-2.6
115,679	+		HMPREF1078_RS11005	0.71	-2.1
115,739	+		HMPREF1078_RS11005	0.73	-2.8
115,739	+		HMPREF1078_RS11005	0.73	-1.0
115,740	-		HMPREF1078_RS11005	0.73	-2.3
115,804	-		HMPREF1078_RS11005	0.75	-2.8
115,806	-		HMPREF1078_RS11005	0.75	-4.4
115,853	+		HMPREF1078_RS11005	0.77	-1.9
115,854	-		HMPREF1078_RS11005	0.77	-2.4
115,854	-		HMPREF1078_RS11005	0.77	-3.1
115,857	+		HMPREF1078_RS11005	0.77	-1.6
115,857	+		HMPREF1078_RS11005	0.77	+0.0
115,857	+		HMPREF1078_RS11005	0.77	-1.9
115,858	-		HMPREF1078_RS11005	0.77	-2.0
115,858	-		HMPREF1078_RS11005	0.77	-1.4
115,862	-		HMPREF1078_RS11005	0.77	-2.2
116,070	+		HMPREF1078_RS11005	0.84	-1.4
116,187	+		HMPREF1078_RS11005	0.88	-0.8
116,188	-		HMPREF1078_RS11005	0.88	-2.6
116,188	-		HMPREF1078_RS11005	0.88	-2.8
116,194	+		HMPREF1078_RS11005	0.88	-2.1
116,201	+		HMPREF1078_RS11005	0.89	-1.9
116,201	+		HMPREF1078_RS11005	0.89	-2.4
116,261	-				-3.0
116,291	+				-3.0
116,291	+				-3.5
116,291	+				+2.6
116,291	+				-2.8
116,292	-				-0.4
116,306	-				-0.2
116,308	-				-3.2
116,308	-				-0.7
116,308	-				-2.2
116,308	-				-1.3
116,309	+				-2.1
116,312	+				-3.5
116,313	-				-0.9
116,313	-				-0.7
116,385	-				-3.1
116,423	+				-3.0
116,423	+				-2.2
116,424	-				-2.9
116,424	-				-1.9
116,424	-				-1.6
116,424	-				-2.9
116,424	-				-4.0
116,459	+				-1.7
116,484	-				-2.8
116,484	-				-1.3
116,530	+				-0.7
116,565	+				-1.2
116,566	-				-1.4
116,566	-				-2.0
116,567	+				-1.8
116,567	+				-2.2
116,568	-				-1.9
116,568	-				-2.8
116,568	-				-2.3
116,698	-				-3.6
116,831	-		HMPREF1078_RS11010	0.16	+0.1
116,850	-		HMPREF1078_RS11010	0.17	-2.2
116,868	-		HMPREF1078_RS11010	0.18	-3.1
116,891	+		HMPREF1078_RS11010	0.19	-1.2
116,891	+		HMPREF1078_RS11010	0.19	-1.4
116,891	+		HMPREF1078_RS11010	0.19	-1.8
116,891	+		HMPREF1078_RS11010	0.19	-1.9
116,892	-		HMPREF1078_RS11010	0.19	-1.9
116,892	-		HMPREF1078_RS11010	0.19	-0.7
116,913	+		HMPREF1078_RS11010	0.20	-2.6
116,914	-		HMPREF1078_RS11010	0.20	-2.9
116,919	-		HMPREF1078_RS11010	0.21	-0.5
116,945	-		HMPREF1078_RS11010	0.22	-0.9
116,954	-		HMPREF1078_RS11010	0.23	-2.9
116,993	+		HMPREF1078_RS11010	0.25	-1.2
116,993	+		HMPREF1078_RS11010	0.25	-2.2
116,993	+		HMPREF1078_RS11010	0.25	-1.4
116,993	+		HMPREF1078_RS11010	0.25	+1.1
116,994	-		HMPREF1078_RS11010	0.25	-0.9
116,994	-		HMPREF1078_RS11010	0.25	-2.4
116,994	-		HMPREF1078_RS11010	0.25	-0.9
116,996	-		HMPREF1078_RS11010	0.25	-0.2
117,037	+		HMPREF1078_RS11010	0.28	-3.4
117,043	-		HMPREF1078_RS11010	0.28	-2.6
117,102	-		HMPREF1078_RS11010	0.31	-0.7
117,102	-		HMPREF1078_RS11010	0.31	-1.7
117,140	+		HMPREF1078_RS11010	0.33	-3.1
117,156	-		HMPREF1078_RS11010	0.34	-2.1
117,160	-		HMPREF1078_RS11010	0.35	-1.9
117,165	+		HMPREF1078_RS11010	0.35	-1.7
117,260	+		HMPREF1078_RS11010	0.40	-2.9
117,299	+		HMPREF1078_RS11010	0.42	-2.2
117,299	+		HMPREF1078_RS11010	0.42	-2.1
117,299	+		HMPREF1078_RS11010	0.42	+0.3
117,299	+		HMPREF1078_RS11010	0.42	-3.3
117,300	-		HMPREF1078_RS11010	0.43	-2.6
117,300	-		HMPREF1078_RS11010	0.43	-1.6
117,328	+		HMPREF1078_RS11010	0.44	-2.9
117,337	+		HMPREF1078_RS11010	0.45	-3.9
117,337	+		HMPREF1078_RS11010	0.45	-1.9
117,338	-		HMPREF1078_RS11010	0.45	-1.6
117,338	-		HMPREF1078_RS11010	0.45	-3.1
117,408	+		HMPREF1078_RS11010	0.49	-2.8
117,453	-		HMPREF1078_RS11010	0.51	-0.2
117,453	-		HMPREF1078_RS11010	0.51	-1.1
117,497	+		HMPREF1078_RS11010	0.54	-1.0