Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS10575 and HMPREF1078_RS10580 overlap by 4 nucleotides HMPREF1078_RS10580 and HMPREF1078_RS10585 are separated by 178 nucleotides
HMPREF1078_RS10575: HMPREF1078_RS10575 - argininosuccinate synthase, at 13,827 to 15,026
_RS10575
HMPREF1078_RS10580: HMPREF1078_RS10580 - N-acetyl-gamma-glutamyl-phosphate reductase, at 15,023 to 15,991
_RS10580
HMPREF1078_RS10585: HMPREF1078_RS10585 - aspartate aminotransferase family protein, at 16,170 to 17,297
_RS10585
Position (kb) 15
16 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 14.052 kb on + strand, within HMPREF1078_RS10575 at 14.054 kb on + strand, within HMPREF1078_RS10575 at 14.071 kb on + strand, within HMPREF1078_RS10575 at 14.084 kb on + strand, within HMPREF1078_RS10575 at 14.085 kb on - strand, within HMPREF1078_RS10575 at 14.085 kb on - strand, within HMPREF1078_RS10575 at 14.115 kb on - strand, within HMPREF1078_RS10575 at 14.115 kb on - strand, within HMPREF1078_RS10575 at 14.142 kb on + strand, within HMPREF1078_RS10575 at 14.302 kb on - strand, within HMPREF1078_RS10575 at 14.346 kb on + strand, within HMPREF1078_RS10575 at 14.353 kb on - strand, within HMPREF1078_RS10575 at 14.353 kb on - strand, within HMPREF1078_RS10575 at 14.359 kb on + strand, within HMPREF1078_RS10575 at 14.359 kb on + strand, within HMPREF1078_RS10575 at 14.360 kb on - strand, within HMPREF1078_RS10575 at 14.360 kb on - strand, within HMPREF1078_RS10575 at 14.515 kb on + strand, within HMPREF1078_RS10575 at 14.569 kb on - strand, within HMPREF1078_RS10575 at 14.569 kb on - strand, within HMPREF1078_RS10575 at 14.600 kb on + strand, within HMPREF1078_RS10575 at 14.600 kb on + strand, within HMPREF1078_RS10575 at 14.600 kb on + strand, within HMPREF1078_RS10575 at 14.600 kb on + strand, within HMPREF1078_RS10575 at 14.627 kb on - strand, within HMPREF1078_RS10575 at 14.688 kb on - strand, within HMPREF1078_RS10575 at 14.710 kb on - strand, within HMPREF1078_RS10575 at 14.736 kb on + strand, within HMPREF1078_RS10575 at 14.828 kb on + strand, within HMPREF1078_RS10575 at 15.023 kb on - strand at 15.041 kb on - strand at 15.059 kb on - strand at 15.059 kb on - strand at 15.124 kb on + strand, within HMPREF1078_RS10580 at 15.125 kb on - strand, within HMPREF1078_RS10580 at 15.190 kb on - strand, within HMPREF1078_RS10580 at 15.277 kb on + strand, within HMPREF1078_RS10580 at 15.354 kb on - strand, within HMPREF1078_RS10580 at 15.401 kb on - strand, within HMPREF1078_RS10580 at 15.401 kb on - strand, within HMPREF1078_RS10580 at 15.401 kb on - strand, within HMPREF1078_RS10580 at 15.489 kb on + strand, within HMPREF1078_RS10580 at 15.490 kb on - strand, within HMPREF1078_RS10580 at 15.563 kb on - strand, within HMPREF1078_RS10580 at 15.575 kb on + strand, within HMPREF1078_RS10580 at 15.621 kb on + strand, within HMPREF1078_RS10580 at 15.649 kb on + strand, within HMPREF1078_RS10580 at 15.650 kb on - strand, within HMPREF1078_RS10580 at 15.761 kb on + strand, within HMPREF1078_RS10580 at 15.761 kb on + strand, within HMPREF1078_RS10580 at 15.762 kb on - strand, within HMPREF1078_RS10580 at 15.762 kb on - strand, within HMPREF1078_RS10580 at 15.762 kb on - strand, within HMPREF1078_RS10580 at 15.823 kb on + strand, within HMPREF1078_RS10580 at 15.824 kb on - strand, within HMPREF1078_RS10580 at 15.842 kb on + strand, within HMPREF1078_RS10580 at 15.843 kb on - strand, within HMPREF1078_RS10580 at 15.885 kb on + strand, within HMPREF1078_RS10580 at 15.886 kb on - strand, within HMPREF1078_RS10580 at 15.961 kb on - strand at 15.999 kb on - strand at 16.043 kb on + strand at 16.044 kb on - strand at 16.115 kb on + strand at 16.169 kb on + strand at 16.187 kb on - strand at 16.187 kb on - strand at 16.187 kb on - strand at 16.187 kb on - strand at 16.188 kb on + strand at 16.234 kb on + strand at 16.234 kb on + strand at 16.234 kb on + strand at 16.269 kb on + strand at 16.269 kb on + strand at 16.310 kb on + strand, within HMPREF1078_RS10585 at 16.311 kb on - strand, within HMPREF1078_RS10585 at 16.314 kb on + strand, within HMPREF1078_RS10585 at 16.318 kb on + strand, within HMPREF1078_RS10585 at 16.318 kb on + strand, within HMPREF1078_RS10585 at 16.318 kb on + strand, within HMPREF1078_RS10585 at 16.326 kb on - strand, within HMPREF1078_RS10585 at 16.349 kb on - strand, within HMPREF1078_RS10585 at 16.356 kb on + strand, within HMPREF1078_RS10585 at 16.356 kb on + strand, within HMPREF1078_RS10585 at 16.547 kb on + strand, within HMPREF1078_RS10585 at 16.547 kb on + strand, within HMPREF1078_RS10585 at 16.547 kb on + strand, within HMPREF1078_RS10585 at 16.548 kb on - strand, within HMPREF1078_RS10585 at 16.620 kb on + strand, within HMPREF1078_RS10585 at 16.621 kb on - strand, within HMPREF1078_RS10585 at 16.621 kb on - strand, within HMPREF1078_RS10585 at 16.686 kb on - strand, within HMPREF1078_RS10585 at 16.731 kb on + strand, within HMPREF1078_RS10585 at 16.770 kb on + strand, within HMPREF1078_RS10585 at 16.771 kb on - strand, within HMPREF1078_RS10585 at 16.842 kb on + strand, within HMPREF1078_RS10585 at 16.939 kb on + strand, within HMPREF1078_RS10585 at 16.940 kb on - strand, within HMPREF1078_RS10585 at 16.941 kb on + strand, within HMPREF1078_RS10585 at 16.942 kb on - strand, within HMPREF1078_RS10585 at 16.979 kb on - strand, within HMPREF1078_RS10585
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 remove 14,052 + HMPREF1078_RS10575 0.19 -3.3 14,054 + HMPREF1078_RS10575 0.19 -4.6 14,071 + HMPREF1078_RS10575 0.20 -3.6 14,084 + HMPREF1078_RS10575 0.21 -3.0 14,085 - HMPREF1078_RS10575 0.21 -2.7 14,085 - HMPREF1078_RS10575 0.21 -1.6 14,115 - HMPREF1078_RS10575 0.24 -1.2 14,115 - HMPREF1078_RS10575 0.24 -1.4 14,142 + HMPREF1078_RS10575 0.26 -2.9 14,302 - HMPREF1078_RS10575 0.40 -4.6 14,346 + HMPREF1078_RS10575 0.43 -4.3 14,353 - HMPREF1078_RS10575 0.44 -1.0 14,353 - HMPREF1078_RS10575 0.44 -4.0 14,359 + HMPREF1078_RS10575 0.44 -3.0 14,359 + HMPREF1078_RS10575 0.44 -2.3 14,360 - HMPREF1078_RS10575 0.44 -2.8 14,360 - HMPREF1078_RS10575 0.44 -2.5 14,515 + HMPREF1078_RS10575 0.57 -1.0 14,569 - HMPREF1078_RS10575 0.62 -3.5 14,569 - HMPREF1078_RS10575 0.62 -2.7 14,600 + HMPREF1078_RS10575 0.64 -1.9 14,600 + HMPREF1078_RS10575 0.64 -1.7 14,600 + HMPREF1078_RS10575 0.64 +0.1 14,600 + HMPREF1078_RS10575 0.64 -3.6 14,627 - HMPREF1078_RS10575 0.67 -3.0 14,688 - HMPREF1078_RS10575 0.72 -0.4 14,710 - HMPREF1078_RS10575 0.74 -2.7 14,736 + HMPREF1078_RS10575 0.76 -3.6 14,828 + HMPREF1078_RS10575 0.83 -3.9 15,023 - -3.7 15,041 - -3.0 15,059 - -1.8 15,059 - -2.8 15,124 + HMPREF1078_RS10580 0.10 -3.0 15,125 - HMPREF1078_RS10580 0.11 -3.4 15,190 - HMPREF1078_RS10580 0.17 -3.5 15,277 + HMPREF1078_RS10580 0.26 -2.9 15,354 - HMPREF1078_RS10580 0.34 -1.4 15,401 - HMPREF1078_RS10580 0.39 -3.4 15,401 - HMPREF1078_RS10580 0.39 -1.6 15,401 - HMPREF1078_RS10580 0.39 -2.3 15,489 + HMPREF1078_RS10580 0.48 -2.9 15,490 - HMPREF1078_RS10580 0.48 -0.4 15,563 - HMPREF1078_RS10580 0.56 -7.1 15,575 + HMPREF1078_RS10580 0.57 -4.8 15,621 + HMPREF1078_RS10580 0.62 -2.2 15,649 + HMPREF1078_RS10580 0.65 -1.2 15,650 - HMPREF1078_RS10580 0.65 -3.8 15,761 + HMPREF1078_RS10580 0.76 -3.6 15,761 + HMPREF1078_RS10580 0.76 -3.9 15,762 - HMPREF1078_RS10580 0.76 -4.6 15,762 - HMPREF1078_RS10580 0.76 -0.7 15,762 - HMPREF1078_RS10580 0.76 -3.9 15,823 + HMPREF1078_RS10580 0.83 -1.9 15,824 - HMPREF1078_RS10580 0.83 -4.1 15,842 + HMPREF1078_RS10580 0.85 -2.2 15,843 - HMPREF1078_RS10580 0.85 -5.6 15,885 + HMPREF1078_RS10580 0.89 -2.5 15,886 - HMPREF1078_RS10580 0.89 -2.9 15,961 - -2.1 15,999 - -2.7 16,043 + -1.4 16,044 - -3.4 16,115 + -2.3 16,169 + -1.7 16,187 - -2.6 16,187 - -1.9 16,187 - -5.1 16,187 - -0.2 16,188 + -4.0 16,234 + -2.8 16,234 + -2.8 16,234 + -4.4 16,269 + -3.3 16,269 + -0.7 16,310 + HMPREF1078_RS10585 0.12 -2.9 16,311 - HMPREF1078_RS10585 0.12 -2.1 16,314 + HMPREF1078_RS10585 0.13 -4.6 16,318 + HMPREF1078_RS10585 0.13 -1.8 16,318 + HMPREF1078_RS10585 0.13 -0.7 16,318 + HMPREF1078_RS10585 0.13 -4.2 16,326 - HMPREF1078_RS10585 0.14 -1.9 16,349 - HMPREF1078_RS10585 0.16 -3.6 16,356 + HMPREF1078_RS10585 0.16 -1.0 16,356 + HMPREF1078_RS10585 0.16 -2.8 16,547 + HMPREF1078_RS10585 0.33 -0.9 16,547 + HMPREF1078_RS10585 0.33 -3.8 16,547 + HMPREF1078_RS10585 0.33 -1.2 16,548 - HMPREF1078_RS10585 0.34 -3.5 16,620 + HMPREF1078_RS10585 0.40 -0.4 16,621 - HMPREF1078_RS10585 0.40 -3.2 16,621 - HMPREF1078_RS10585 0.40 -1.2 16,686 - HMPREF1078_RS10585 0.46 -3.3 16,731 + HMPREF1078_RS10585 0.50 -3.3 16,770 + HMPREF1078_RS10585 0.53 -5.3 16,771 - HMPREF1078_RS10585 0.53 -2.9 16,842 + HMPREF1078_RS10585 0.60 -3.6 16,939 + HMPREF1078_RS10585 0.68 -2.7 16,940 - HMPREF1078_RS10585 0.68 -2.5 16,941 + HMPREF1078_RS10585 0.68 -1.8 16,942 - HMPREF1078_RS10585 0.68 -4.1 16,979 - HMPREF1078_RS10585 0.72 -3.5
Or see this region's nucleotide sequence