Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS10560 and HMPREF1078_RS10565 are separated by 182 nucleotides HMPREF1078_RS10565 and HMPREF1078_RS10570 are separated by 72 nucleotides HMPREF1078_RS10570 and HMPREF1078_RS10575 are separated by 42 nucleotides
HMPREF1078_RS10560: HMPREF1078_RS10560 - M48 family metallopeptidase, at 11,707 to 12,504
_RS10560
HMPREF1078_RS10565: HMPREF1078_RS10565 - arginine repressor, at 12,687 to 13,130
_RS10565
HMPREF1078_RS10570: HMPREF1078_RS10570 - GNAT family N-acetyltransferase, at 13,203 to 13,784
_RS10570
HMPREF1078_RS10575: HMPREF1078_RS10575 - argininosuccinate synthase, at 13,827 to 15,026
_RS10575
Position (kb) 13
14 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 12.219 kb on + strand, within HMPREF1078_RS10560 at 12.273 kb on - strand, within HMPREF1078_RS10560 at 12.300 kb on + strand, within HMPREF1078_RS10560 at 12.360 kb on + strand, within HMPREF1078_RS10560 at 12.361 kb on - strand, within HMPREF1078_RS10560 at 12.362 kb on + strand, within HMPREF1078_RS10560 at 12.460 kb on + strand at 12.460 kb on + strand at 12.460 kb on + strand at 12.492 kb on + strand at 12.523 kb on - strand at 12.555 kb on + strand at 12.589 kb on - strand at 12.655 kb on + strand at 12.655 kb on + strand at 12.692 kb on + strand at 12.730 kb on + strand at 12.731 kb on - strand at 12.731 kb on - strand at 12.731 kb on - strand at 12.745 kb on + strand, within HMPREF1078_RS10565 at 12.823 kb on + strand, within HMPREF1078_RS10565 at 12.823 kb on + strand, within HMPREF1078_RS10565 at 12.823 kb on + strand, within HMPREF1078_RS10565 at 12.824 kb on - strand, within HMPREF1078_RS10565 at 12.847 kb on + strand, within HMPREF1078_RS10565 at 12.848 kb on - strand, within HMPREF1078_RS10565 at 12.848 kb on - strand, within HMPREF1078_RS10565 at 12.867 kb on + strand, within HMPREF1078_RS10565 at 12.867 kb on + strand, within HMPREF1078_RS10565 at 12.867 kb on + strand, within HMPREF1078_RS10565 at 12.868 kb on - strand, within HMPREF1078_RS10565 at 12.868 kb on - strand, within HMPREF1078_RS10565 at 12.868 kb on - strand, within HMPREF1078_RS10565 at 12.868 kb on - strand, within HMPREF1078_RS10565 at 12.871 kb on + strand, within HMPREF1078_RS10565 at 12.871 kb on + strand, within HMPREF1078_RS10565 at 12.872 kb on - strand, within HMPREF1078_RS10565 at 12.872 kb on - strand, within HMPREF1078_RS10565 at 12.872 kb on - strand, within HMPREF1078_RS10565 at 12.899 kb on + strand, within HMPREF1078_RS10565 at 12.899 kb on + strand, within HMPREF1078_RS10565 at 12.899 kb on + strand, within HMPREF1078_RS10565 at 12.900 kb on - strand, within HMPREF1078_RS10565 at 12.900 kb on - strand, within HMPREF1078_RS10565 at 12.900 kb on - strand, within HMPREF1078_RS10565 at 13.014 kb on - strand, within HMPREF1078_RS10565 at 13.133 kb on + strand at 13.134 kb on - strand at 13.134 kb on - strand at 13.134 kb on - strand at 13.134 kb on - strand at 13.134 kb on - strand at 13.136 kb on - strand at 13.136 kb on - strand at 13.137 kb on + strand at 13.138 kb on - strand at 13.138 kb on - strand at 13.140 kb on - strand at 13.144 kb on + strand at 13.144 kb on + strand at 13.144 kb on + strand at 13.184 kb on + strand at 13.199 kb on - strand at 13.257 kb on + strand at 13.258 kb on - strand at 13.261 kb on + strand at 13.262 kb on - strand, within HMPREF1078_RS10570 at 13.262 kb on - strand, within HMPREF1078_RS10570 at 13.266 kb on - strand, within HMPREF1078_RS10570 at 13.325 kb on + strand, within HMPREF1078_RS10570 at 13.325 kb on + strand, within HMPREF1078_RS10570 at 13.326 kb on - strand, within HMPREF1078_RS10570 at 13.326 kb on - strand, within HMPREF1078_RS10570 at 13.335 kb on + strand, within HMPREF1078_RS10570 at 13.335 kb on + strand, within HMPREF1078_RS10570 at 13.336 kb on - strand, within HMPREF1078_RS10570 at 13.336 kb on - strand, within HMPREF1078_RS10570 at 13.336 kb on - strand, within HMPREF1078_RS10570 at 13.379 kb on - strand, within HMPREF1078_RS10570 at 13.433 kb on + strand, within HMPREF1078_RS10570 at 13.434 kb on + strand, within HMPREF1078_RS10570 at 13.434 kb on + strand, within HMPREF1078_RS10570 at 13.434 kb on + strand, within HMPREF1078_RS10570 at 13.435 kb on - strand, within HMPREF1078_RS10570 at 13.435 kb on - strand, within HMPREF1078_RS10570 at 13.435 kb on - strand, within HMPREF1078_RS10570 at 13.597 kb on + strand, within HMPREF1078_RS10570 at 13.598 kb on - strand, within HMPREF1078_RS10570 at 13.602 kb on + strand, within HMPREF1078_RS10570 at 13.790 kb on - strand at 13.813 kb on + strand at 13.821 kb on + strand at 13.840 kb on + strand at 13.843 kb on + strand at 13.883 kb on + strand at 13.883 kb on + strand at 13.883 kb on + strand at 13.883 kb on + strand at 13.887 kb on + strand at 13.887 kb on + strand at 13.917 kb on + strand at 13.918 kb on - strand at 13.918 kb on - strand at 13.942 kb on - strand at 13.983 kb on + strand, within HMPREF1078_RS10575 at 13.983 kb on + strand, within HMPREF1078_RS10575 at 13.985 kb on + strand, within HMPREF1078_RS10575 at 13.985 kb on + strand, within HMPREF1078_RS10575 at 14.000 kb on + strand, within HMPREF1078_RS10575 at 14.001 kb on - strand, within HMPREF1078_RS10575 at 14.001 kb on - strand, within HMPREF1078_RS10575 at 14.005 kb on - strand, within HMPREF1078_RS10575 at 14.005 kb on - strand, within HMPREF1078_RS10575 at 14.021 kb on - strand, within HMPREF1078_RS10575 at 14.052 kb on + strand, within HMPREF1078_RS10575 at 14.054 kb on + strand, within HMPREF1078_RS10575 at 14.071 kb on + strand, within HMPREF1078_RS10575 at 14.084 kb on + strand, within HMPREF1078_RS10575 at 14.085 kb on - strand, within HMPREF1078_RS10575 at 14.085 kb on - strand, within HMPREF1078_RS10575 at 14.115 kb on - strand, within HMPREF1078_RS10575 at 14.115 kb on - strand, within HMPREF1078_RS10575 at 14.142 kb on + strand, within HMPREF1078_RS10575 at 14.302 kb on - strand, within HMPREF1078_RS10575 at 14.346 kb on + strand, within HMPREF1078_RS10575 at 14.353 kb on - strand, within HMPREF1078_RS10575 at 14.353 kb on - strand, within HMPREF1078_RS10575 at 14.359 kb on + strand, within HMPREF1078_RS10575 at 14.359 kb on + strand, within HMPREF1078_RS10575 at 14.360 kb on - strand, within HMPREF1078_RS10575 at 14.360 kb on - strand, within HMPREF1078_RS10575 at 14.515 kb on + strand, within HMPREF1078_RS10575 at 14.569 kb on - strand, within HMPREF1078_RS10575 at 14.569 kb on - strand, within HMPREF1078_RS10575 at 14.600 kb on + strand, within HMPREF1078_RS10575 at 14.600 kb on + strand, within HMPREF1078_RS10575 at 14.600 kb on + strand, within HMPREF1078_RS10575 at 14.600 kb on + strand, within HMPREF1078_RS10575 at 14.627 kb on - strand, within HMPREF1078_RS10575 at 14.688 kb on - strand, within HMPREF1078_RS10575 at 14.710 kb on - strand, within HMPREF1078_RS10575 at 14.736 kb on + strand, within HMPREF1078_RS10575
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 remove 12,219 + HMPREF1078_RS10560 0.64 -0.7 12,273 - HMPREF1078_RS10560 0.71 -3.5 12,300 + HMPREF1078_RS10560 0.74 -0.1 12,360 + HMPREF1078_RS10560 0.82 -0.9 12,361 - HMPREF1078_RS10560 0.82 -2.3 12,362 + HMPREF1078_RS10560 0.82 -2.4 12,460 + -2.4 12,460 + -1.8 12,460 + +0.8 12,492 + -0.7 12,523 - +2.3 12,555 + -1.4 12,589 - +1.3 12,655 + -1.2 12,655 + +0.0 12,692 + -1.0 12,730 + +0.6 12,731 - -3.2 12,731 - -3.1 12,731 - -2.7 12,745 + HMPREF1078_RS10565 0.13 -0.9 12,823 + HMPREF1078_RS10565 0.31 -1.2 12,823 + HMPREF1078_RS10565 0.31 +0.6 12,823 + HMPREF1078_RS10565 0.31 -2.0 12,824 - HMPREF1078_RS10565 0.31 -2.9 12,847 + HMPREF1078_RS10565 0.36 -2.7 12,848 - HMPREF1078_RS10565 0.36 -1.7 12,848 - HMPREF1078_RS10565 0.36 -3.4 12,867 + HMPREF1078_RS10565 0.41 +1.7 12,867 + HMPREF1078_RS10565 0.41 +0.6 12,867 + HMPREF1078_RS10565 0.41 -1.0 12,868 - HMPREF1078_RS10565 0.41 -0.4 12,868 - HMPREF1078_RS10565 0.41 -3.1 12,868 - HMPREF1078_RS10565 0.41 -2.7 12,868 - HMPREF1078_RS10565 0.41 -1.9 12,871 + HMPREF1078_RS10565 0.41 -0.4 12,871 + HMPREF1078_RS10565 0.41 -0.7 12,872 - HMPREF1078_RS10565 0.42 -3.6 12,872 - HMPREF1078_RS10565 0.42 -2.9 12,872 - HMPREF1078_RS10565 0.42 -3.2 12,899 + HMPREF1078_RS10565 0.48 -0.2 12,899 + HMPREF1078_RS10565 0.48 -0.7 12,899 + HMPREF1078_RS10565 0.48 +0.6 12,900 - HMPREF1078_RS10565 0.48 +0.6 12,900 - HMPREF1078_RS10565 0.48 -3.5 12,900 - HMPREF1078_RS10565 0.48 -1.7 13,014 - HMPREF1078_RS10565 0.74 -3.7 13,133 + +0.1 13,134 - -3.0 13,134 - -3.4 13,134 - -2.9 13,134 - -4.1 13,134 - -3.2 13,136 - -4.1 13,136 - -2.6 13,137 + -1.3 13,138 - -2.1 13,138 - -2.7 13,140 - -2.9 13,144 + -1.2 13,144 + -1.3 13,144 + -1.7 13,184 + +0.8 13,199 - -3.1 13,257 + -3.3 13,258 - -2.6 13,261 + -2.8 13,262 - HMPREF1078_RS10570 0.10 -4.3 13,262 - HMPREF1078_RS10570 0.10 -3.5 13,266 - HMPREF1078_RS10570 0.11 -3.3 13,325 + HMPREF1078_RS10570 0.21 +0.6 13,325 + HMPREF1078_RS10570 0.21 -4.3 13,326 - HMPREF1078_RS10570 0.21 -3.1 13,326 - HMPREF1078_RS10570 0.21 -3.3 13,335 + HMPREF1078_RS10570 0.23 -2.4 13,335 + HMPREF1078_RS10570 0.23 -0.9 13,336 - HMPREF1078_RS10570 0.23 -3.9 13,336 - HMPREF1078_RS10570 0.23 -3.4 13,336 - HMPREF1078_RS10570 0.23 -4.3 13,379 - HMPREF1078_RS10570 0.30 -3.2 13,433 + HMPREF1078_RS10570 0.40 -2.9 13,434 + HMPREF1078_RS10570 0.40 -3.1 13,434 + HMPREF1078_RS10570 0.40 -0.9 13,434 + HMPREF1078_RS10570 0.40 -1.7 13,435 - HMPREF1078_RS10570 0.40 -2.7 13,435 - HMPREF1078_RS10570 0.40 -3.0 13,435 - HMPREF1078_RS10570 0.40 -1.8 13,597 + HMPREF1078_RS10570 0.68 -3.9 13,598 - HMPREF1078_RS10570 0.68 -3.8 13,602 + HMPREF1078_RS10570 0.69 -2.8 13,790 - -2.7 13,813 + +0.7 13,821 + -2.9 13,840 + -3.3 13,843 + -0.9 13,883 + -2.2 13,883 + -3.2 13,883 + -4.7 13,883 + -0.9 13,887 + -2.9 13,887 + -2.5 13,917 + -3.2 13,918 - -0.9 13,918 - -3.5 13,942 - +0.1 13,983 + HMPREF1078_RS10575 0.13 -3.4 13,983 + HMPREF1078_RS10575 0.13 -3.9 13,985 + HMPREF1078_RS10575 0.13 -4.6 13,985 + HMPREF1078_RS10575 0.13 -0.4 14,000 + HMPREF1078_RS10575 0.14 -3.5 14,001 - HMPREF1078_RS10575 0.14 -3.6 14,001 - HMPREF1078_RS10575 0.14 -2.9 14,005 - HMPREF1078_RS10575 0.15 -2.6 14,005 - HMPREF1078_RS10575 0.15 -3.5 14,021 - HMPREF1078_RS10575 0.16 -5.6 14,052 + HMPREF1078_RS10575 0.19 -3.3 14,054 + HMPREF1078_RS10575 0.19 -4.6 14,071 + HMPREF1078_RS10575 0.20 -3.6 14,084 + HMPREF1078_RS10575 0.21 -3.0 14,085 - HMPREF1078_RS10575 0.21 -2.7 14,085 - HMPREF1078_RS10575 0.21 -1.6 14,115 - HMPREF1078_RS10575 0.24 -1.2 14,115 - HMPREF1078_RS10575 0.24 -1.4 14,142 + HMPREF1078_RS10575 0.26 -2.9 14,302 - HMPREF1078_RS10575 0.40 -4.6 14,346 + HMPREF1078_RS10575 0.43 -4.3 14,353 - HMPREF1078_RS10575 0.44 -1.0 14,353 - HMPREF1078_RS10575 0.44 -4.0 14,359 + HMPREF1078_RS10575 0.44 -3.0 14,359 + HMPREF1078_RS10575 0.44 -2.3 14,360 - HMPREF1078_RS10575 0.44 -2.8 14,360 - HMPREF1078_RS10575 0.44 -2.5 14,515 + HMPREF1078_RS10575 0.57 -1.0 14,569 - HMPREF1078_RS10575 0.62 -3.5 14,569 - HMPREF1078_RS10575 0.62 -2.7 14,600 + HMPREF1078_RS10575 0.64 -1.9 14,600 + HMPREF1078_RS10575 0.64 -1.7 14,600 + HMPREF1078_RS10575 0.64 +0.1 14,600 + HMPREF1078_RS10575 0.64 -3.6 14,627 - HMPREF1078_RS10575 0.67 -3.0 14,688 - HMPREF1078_RS10575 0.72 -0.4 14,710 - HMPREF1078_RS10575 0.74 -2.7 14,736 + HMPREF1078_RS10575 0.76 -3.6
Or see this region's nucleotide sequence