Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS10430

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS10425 and HMPREF1078_RS10430 are separated by 112 nucleotidesHMPREF1078_RS10430 and HMPREF1078_RS10435 are separated by 322 nucleotidesHMPREF1078_RS10435 and HMPREF1078_RS10440 are separated by 100 nucleotides HMPREF1078_RS10425: HMPREF1078_RS10425 - peptidase T, at 719,101 to 720,330 _RS10425 HMPREF1078_RS10430: HMPREF1078_RS10430 - amidophosphoribosyltransferase, at 720,443 to 721,849 _RS10430 HMPREF1078_RS10435: HMPREF1078_RS10435 - tRNA-Thr, at 722,172 to 722,245 _RS10435 HMPREF1078_RS10440: HMPREF1078_RS10440 - DUF4199 domain-containing protein, at 722,346 to 722,876 _RS10440 Position (kb) 720 721 722Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 719.494 kb on + strand, within HMPREF1078_RS10425at 719.494 kb on + strand, within HMPREF1078_RS10425at 719.494 kb on + strand, within HMPREF1078_RS10425at 719.499 kb on + strand, within HMPREF1078_RS10425at 719.500 kb on - strand, within HMPREF1078_RS10425at 719.500 kb on - strand, within HMPREF1078_RS10425at 719.501 kb on + strand, within HMPREF1078_RS10425at 719.501 kb on + strand, within HMPREF1078_RS10425at 719.572 kb on - strand, within HMPREF1078_RS10425at 719.665 kb on + strand, within HMPREF1078_RS10425at 719.666 kb on - strand, within HMPREF1078_RS10425at 719.751 kb on + strand, within HMPREF1078_RS10425at 719.751 kb on + strand, within HMPREF1078_RS10425at 719.752 kb on - strand, within HMPREF1078_RS10425at 719.752 kb on - strand, within HMPREF1078_RS10425at 719.753 kb on + strand, within HMPREF1078_RS10425at 719.953 kb on - strand, within HMPREF1078_RS10425at 719.966 kb on + strand, within HMPREF1078_RS10425at 719.967 kb on - strand, within HMPREF1078_RS10425at 719.967 kb on - strand, within HMPREF1078_RS10425at 719.967 kb on - strand, within HMPREF1078_RS10425at 719.989 kb on - strand, within HMPREF1078_RS10425at 720.044 kb on + strand, within HMPREF1078_RS10425at 720.165 kb on - strand, within HMPREF1078_RS10425at 720.165 kb on - strand, within HMPREF1078_RS10425at 720.200 kb on - strand, within HMPREF1078_RS10425at 720.330 kb on + strandat 720.331 kb on - strandat 720.337 kb on - strandat 720.337 kb on - strandat 720.343 kb on - strandat 720.346 kb on - strandat 720.346 kb on - strandat 720.358 kb on - strandat 720.358 kb on - strandat 720.363 kb on + strandat 720.368 kb on - strandat 720.379 kb on - strandat 720.436 kb on + strandat 720.437 kb on - strandat 720.445 kb on - strandat 720.694 kb on + strand, within HMPREF1078_RS10430at 720.694 kb on + strand, within HMPREF1078_RS10430at 720.695 kb on - strand, within HMPREF1078_RS10430at 720.718 kb on - strand, within HMPREF1078_RS10430at 720.721 kb on + strand, within HMPREF1078_RS10430at 720.722 kb on - strand, within HMPREF1078_RS10430at 720.722 kb on - strand, within HMPREF1078_RS10430at 720.722 kb on - strand, within HMPREF1078_RS10430at 720.745 kb on + strand, within HMPREF1078_RS10430at 720.745 kb on + strand, within HMPREF1078_RS10430at 720.745 kb on + strand, within HMPREF1078_RS10430at 720.745 kb on + strand, within HMPREF1078_RS10430at 720.745 kb on + strand, within HMPREF1078_RS10430at 720.745 kb on + strand, within HMPREF1078_RS10430at 720.745 kb on + strand, within HMPREF1078_RS10430at 720.745 kb on + strand, within HMPREF1078_RS10430at 720.746 kb on - strand, within HMPREF1078_RS10430at 720.746 kb on - strand, within HMPREF1078_RS10430at 720.746 kb on - strand, within HMPREF1078_RS10430at 720.746 kb on - strand, within HMPREF1078_RS10430at 720.746 kb on - strand, within HMPREF1078_RS10430at 720.746 kb on - strand, within HMPREF1078_RS10430at 720.746 kb on - strand, within HMPREF1078_RS10430at 720.746 kb on - strand, within HMPREF1078_RS10430at 720.746 kb on - strand, within HMPREF1078_RS10430at 720.749 kb on + strand, within HMPREF1078_RS10430at 720.749 kb on + strand, within HMPREF1078_RS10430at 720.750 kb on - strand, within HMPREF1078_RS10430at 720.750 kb on - strand, within HMPREF1078_RS10430at 720.750 kb on - strand, within HMPREF1078_RS10430at 720.765 kb on + strand, within HMPREF1078_RS10430at 720.771 kb on + strand, within HMPREF1078_RS10430at 720.771 kb on + strand, within HMPREF1078_RS10430at 720.771 kb on + strand, within HMPREF1078_RS10430at 720.771 kb on + strand, within HMPREF1078_RS10430at 720.772 kb on - strand, within HMPREF1078_RS10430at 720.772 kb on - strand, within HMPREF1078_RS10430at 720.772 kb on - strand, within HMPREF1078_RS10430at 720.923 kb on - strand, within HMPREF1078_RS10430at 720.942 kb on + strand, within HMPREF1078_RS10430at 720.943 kb on - strand, within HMPREF1078_RS10430at 720.943 kb on - strand, within HMPREF1078_RS10430at 720.943 kb on - strand, within HMPREF1078_RS10430at 720.943 kb on - strand, within HMPREF1078_RS10430at 720.950 kb on + strand, within HMPREF1078_RS10430at 721.021 kb on + strand, within HMPREF1078_RS10430at 721.110 kb on + strand, within HMPREF1078_RS10430at 721.111 kb on - strand, within HMPREF1078_RS10430at 721.129 kb on + strand, within HMPREF1078_RS10430at 721.131 kb on + strand, within HMPREF1078_RS10430at 721.134 kb on + strand, within HMPREF1078_RS10430at 721.134 kb on + strand, within HMPREF1078_RS10430at 721.134 kb on + strand, within HMPREF1078_RS10430at 721.135 kb on - strand, within HMPREF1078_RS10430at 721.242 kb on - strand, within HMPREF1078_RS10430at 721.259 kb on - strand, within HMPREF1078_RS10430at 721.263 kb on - strand, within HMPREF1078_RS10430at 721.291 kb on - strand, within HMPREF1078_RS10430at 721.291 kb on - strand, within HMPREF1078_RS10430at 721.310 kb on + strand, within HMPREF1078_RS10430at 721.310 kb on + strand, within HMPREF1078_RS10430at 721.310 kb on + strand, within HMPREF1078_RS10430at 721.310 kb on + strand, within HMPREF1078_RS10430at 721.311 kb on - strand, within HMPREF1078_RS10430at 721.311 kb on - strand, within HMPREF1078_RS10430at 721.311 kb on - strand, within HMPREF1078_RS10430at 721.312 kb on + strand, within HMPREF1078_RS10430at 721.312 kb on + strand, within HMPREF1078_RS10430at 721.315 kb on + strand, within HMPREF1078_RS10430at 721.315 kb on + strand, within HMPREF1078_RS10430at 721.316 kb on - strand, within HMPREF1078_RS10430at 721.316 kb on - strand, within HMPREF1078_RS10430at 721.316 kb on - strand, within HMPREF1078_RS10430at 721.316 kb on - strand, within HMPREF1078_RS10430at 721.319 kb on - strand, within HMPREF1078_RS10430at 721.319 kb on - strand, within HMPREF1078_RS10430at 721.324 kb on + strand, within HMPREF1078_RS10430at 721.355 kb on - strand, within HMPREF1078_RS10430at 721.355 kb on - strand, within HMPREF1078_RS10430at 721.355 kb on - strand, within HMPREF1078_RS10430at 721.740 kb on + strandat 721.740 kb on + strandat 721.740 kb on + strandat 721.740 kb on + strandat 721.741 kb on - strandat 721.741 kb on - strandat 721.741 kb on - strandat 721.741 kb on - strandat 721.743 kb on + strandat 721.744 kb on + strandat 721.744 kb on + strandat 721.744 kb on + strandat 721.745 kb on - strandat 721.780 kb on + strandat 721.780 kb on + strandat 721.781 kb on - strandat 721.781 kb on - strandat 721.781 kb on - strandat 721.795 kb on - strandat 721.822 kb on + strandat 721.823 kb on - strandat 721.823 kb on - strandat 721.828 kb on + strandat 721.852 kb on + strandat 721.852 kb on + strandat 721.853 kb on - strandat 721.853 kb on - strandat 721.856 kb on + strandat 721.890 kb on + strandat 721.899 kb on - strandat 721.938 kb on + strandat 721.978 kb on - strandat 722.003 kb on - strandat 722.180 kb on - strand, within HMPREF1078_RS10435at 722.279 kb on + strandat 722.288 kb on + strandat 722.288 kb on + strandat 722.288 kb on + strandat 722.289 kb on - strandat 722.290 kb on + strandat 722.291 kb on - strandat 722.307 kb on + strandat 722.342 kb on + strandat 722.365 kb on + strandat 722.388 kb on + strandat 722.399 kb on + strand, within HMPREF1078_RS10440at 722.399 kb on + strand, within HMPREF1078_RS10440at 722.407 kb on + strand, within HMPREF1078_RS10440at 722.407 kb on + strand, within HMPREF1078_RS10440at 722.407 kb on + strand, within HMPREF1078_RS10440at 722.409 kb on + strand, within HMPREF1078_RS10440at 722.409 kb on + strand, within HMPREF1078_RS10440at 722.462 kb on + strand, within HMPREF1078_RS10440at 722.472 kb on + strand, within HMPREF1078_RS10440at 722.472 kb on + strand, within HMPREF1078_RS10440at 722.482 kb on + strand, within HMPREF1078_RS10440at 722.508 kb on + strand, within HMPREF1078_RS10440at 722.539 kb on + strand, within HMPREF1078_RS10440at 722.539 kb on + strand, within HMPREF1078_RS10440at 722.539 kb on + strand, within HMPREF1078_RS10440at 722.589 kb on + strand, within HMPREF1078_RS10440at 722.589 kb on + strand, within HMPREF1078_RS10440at 722.629 kb on + strand, within HMPREF1078_RS10440at 722.686 kb on + strand, within HMPREF1078_RS10440at 722.806 kb on + strand, within HMPREF1078_RS10440at 722.806 kb on + strand, within HMPREF1078_RS10440at 722.806 kb on + strand, within HMPREF1078_RS10440

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3
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719,494 + HMPREF1078_RS10425 0.32 -1.2
719,494 + HMPREF1078_RS10425 0.32 +1.3
719,494 + HMPREF1078_RS10425 0.32 -1.2
719,499 + HMPREF1078_RS10425 0.32 -2.1
719,500 - HMPREF1078_RS10425 0.32 +1.4
719,500 - HMPREF1078_RS10425 0.32 +0.8
719,501 + HMPREF1078_RS10425 0.33 -2.5
719,501 + HMPREF1078_RS10425 0.33 +0.8
719,572 - HMPREF1078_RS10425 0.38 -1.3
719,665 + HMPREF1078_RS10425 0.46 -0.6
719,666 - HMPREF1078_RS10425 0.46 -1.5
719,751 + HMPREF1078_RS10425 0.53 -1.9
719,751 + HMPREF1078_RS10425 0.53 +0.8
719,752 - HMPREF1078_RS10425 0.53 -2.2
719,752 - HMPREF1078_RS10425 0.53 -0.1
719,753 + HMPREF1078_RS10425 0.53 -3.4
719,953 - HMPREF1078_RS10425 0.69 +0.3
719,966 + HMPREF1078_RS10425 0.70 +0.4
719,967 - HMPREF1078_RS10425 0.70 -0.9
719,967 - HMPREF1078_RS10425 0.70 +0.7
719,967 - HMPREF1078_RS10425 0.70 -2.4
719,989 - HMPREF1078_RS10425 0.72 -1.1
720,044 + HMPREF1078_RS10425 0.77 +0.3
720,165 - HMPREF1078_RS10425 0.87 +1.8
720,165 - HMPREF1078_RS10425 0.87 -0.1
720,200 - HMPREF1078_RS10425 0.89 +0.7
720,330 + +0.8
720,331 - -1.2
720,337 - +0.1
720,337 - +0.0
720,343 - -1.1
720,346 - -1.9
720,346 - -3.1
720,358 - +1.3
720,358 - +1.6
720,363 + -4.1
720,368 - -0.3
720,379 - +1.4
720,436 + -0.4
720,437 - -0.1
720,445 - +2.4
720,694 + HMPREF1078_RS10430 0.18 -2.6
720,694 + HMPREF1078_RS10430 0.18 -3.4
720,695 - HMPREF1078_RS10430 0.18 -3.5
720,718 - HMPREF1078_RS10430 0.20 -4.4
720,721 + HMPREF1078_RS10430 0.20 -2.4
720,722 - HMPREF1078_RS10430 0.20 -2.7
720,722 - HMPREF1078_RS10430 0.20 -0.4
720,722 - HMPREF1078_RS10430 0.20 -4.7
720,745 + HMPREF1078_RS10430 0.21 +0.7
720,745 + HMPREF1078_RS10430 0.21 -3.4
720,745 + HMPREF1078_RS10430 0.21 -1.5
720,745 + HMPREF1078_RS10430 0.21 -3.3
720,745 + HMPREF1078_RS10430 0.21 +0.2
720,745 + HMPREF1078_RS10430 0.21 -4.3
720,745 + HMPREF1078_RS10430 0.21 -3.3
720,745 + HMPREF1078_RS10430 0.21 -1.5
720,746 - HMPREF1078_RS10430 0.22 -0.6
720,746 - HMPREF1078_RS10430 0.22 -2.8
720,746 - HMPREF1078_RS10430 0.22 -2.2
720,746 - HMPREF1078_RS10430 0.22 -1.6
720,746 - HMPREF1078_RS10430 0.22 -3.4
720,746 - HMPREF1078_RS10430 0.22 -3.9
720,746 - HMPREF1078_RS10430 0.22 -3.9
720,746 - HMPREF1078_RS10430 0.22 -2.2
720,746 - HMPREF1078_RS10430 0.22 -1.8
720,749 + HMPREF1078_RS10430 0.22 -1.9
720,749 + HMPREF1078_RS10430 0.22 -3.3
720,750 - HMPREF1078_RS10430 0.22 -2.3
720,750 - HMPREF1078_RS10430 0.22 -1.3
720,750 - HMPREF1078_RS10430 0.22 -1.6
720,765 + HMPREF1078_RS10430 0.23 -2.7
720,771 + HMPREF1078_RS10430 0.23 +0.2
720,771 + HMPREF1078_RS10430 0.23 -3.0
720,771 + HMPREF1078_RS10430 0.23 -4.4
720,771 + HMPREF1078_RS10430 0.23 -3.3
720,772 - HMPREF1078_RS10430 0.23 -2.3
720,772 - HMPREF1078_RS10430 0.23 -3.6
720,772 - HMPREF1078_RS10430 0.23 -1.7
720,923 - HMPREF1078_RS10430 0.34 -2.2
720,942 + HMPREF1078_RS10430 0.35 -4.2
720,943 - HMPREF1078_RS10430 0.36 -1.5
720,943 - HMPREF1078_RS10430 0.36 -3.2
720,943 - HMPREF1078_RS10430 0.36 -1.2
720,943 - HMPREF1078_RS10430 0.36 -1.6
720,950 + HMPREF1078_RS10430 0.36 -0.9
721,021 + HMPREF1078_RS10430 0.41 -2.4
721,110 + HMPREF1078_RS10430 0.47 -4.2
721,111 - HMPREF1078_RS10430 0.47 -3.2
721,129 + HMPREF1078_RS10430 0.49 -3.3
721,131 + HMPREF1078_RS10430 0.49 -2.7
721,134 + HMPREF1078_RS10430 0.49 -3.8
721,134 + HMPREF1078_RS10430 0.49 -2.7
721,134 + HMPREF1078_RS10430 0.49 -3.3
721,135 - HMPREF1078_RS10430 0.49 -4.6
721,242 - HMPREF1078_RS10430 0.57 -4.0
721,259 - HMPREF1078_RS10430 0.58 -0.9
721,263 - HMPREF1078_RS10430 0.58 -3.4
721,291 - HMPREF1078_RS10430 0.60 -2.5
721,291 - HMPREF1078_RS10430 0.60 -3.3
721,310 + HMPREF1078_RS10430 0.62 -3.3
721,310 + HMPREF1078_RS10430 0.62 +0.2
721,310 + HMPREF1078_RS10430 0.62 -2.1
721,310 + HMPREF1078_RS10430 0.62 -0.4
721,311 - HMPREF1078_RS10430 0.62 -3.6
721,311 - HMPREF1078_RS10430 0.62 -2.1
721,311 - HMPREF1078_RS10430 0.62 -2.2
721,312 + HMPREF1078_RS10430 0.62 -2.2
721,312 + HMPREF1078_RS10430 0.62 -3.1
721,315 + HMPREF1078_RS10430 0.62 -3.4
721,315 + HMPREF1078_RS10430 0.62 -2.0
721,316 - HMPREF1078_RS10430 0.62 -0.5
721,316 - HMPREF1078_RS10430 0.62 -6.5
721,316 - HMPREF1078_RS10430 0.62 -1.8
721,316 - HMPREF1078_RS10430 0.62 -1.5
721,319 - HMPREF1078_RS10430 0.62 -2.7
721,319 - HMPREF1078_RS10430 0.62 -2.2
721,324 + HMPREF1078_RS10430 0.63 -3.3
721,355 - HMPREF1078_RS10430 0.65 -3.7
721,355 - HMPREF1078_RS10430 0.65 -1.8
721,355 - HMPREF1078_RS10430 0.65 -1.3
721,740 + -0.9
721,740 + -4.0
721,740 + -2.0
721,740 + -3.8
721,741 - -5.0
721,741 - -2.8
721,741 - -0.1
721,741 - -3.5
721,743 + -0.8
721,744 + -0.8
721,744 + -2.4
721,744 + -1.1
721,745 - -4.3
721,780 + -1.8
721,780 + -1.8
721,781 - -0.9
721,781 - -4.4
721,781 - -2.3
721,795 - -2.1
721,822 + -0.8
721,823 - -3.8
721,823 - -2.1
721,828 + -2.2
721,852 + -2.1
721,852 + -2.7
721,853 - -0.8
721,853 - -3.6
721,856 + -4.0
721,890 + -3.8
721,899 - +2.6
721,938 + -0.3
721,978 - -1.6
722,003 - -2.0
722,180 - HMPREF1078_RS10435 0.11 -2.3
722,279 + +2.2
722,288 + +0.3
722,288 + -0.6
722,288 + -0.3
722,289 - -0.8
722,290 + +0.7
722,291 - +0.7
722,307 + -1.5
722,342 + -0.8
722,365 + -3.7
722,388 + -4.0
722,399 + HMPREF1078_RS10440 0.10 -1.2
722,399 + HMPREF1078_RS10440 0.10 +0.7
722,407 + HMPREF1078_RS10440 0.11 -1.6
722,407 + HMPREF1078_RS10440 0.11 -2.0
722,407 + HMPREF1078_RS10440 0.11 -1.6
722,409 + HMPREF1078_RS10440 0.12 -1.8
722,409 + HMPREF1078_RS10440 0.12 -3.5
722,462 + HMPREF1078_RS10440 0.22 -4.4
722,472 + HMPREF1078_RS10440 0.24 -1.7
722,472 + HMPREF1078_RS10440 0.24 +0.4
722,482 + HMPREF1078_RS10440 0.26 -1.8
722,508 + HMPREF1078_RS10440 0.31 -2.7
722,539 + HMPREF1078_RS10440 0.36 -0.3
722,539 + HMPREF1078_RS10440 0.36 -0.3
722,539 + HMPREF1078_RS10440 0.36 +2.1
722,589 + HMPREF1078_RS10440 0.46 +0.9
722,589 + HMPREF1078_RS10440 0.46 -0.9
722,629 + HMPREF1078_RS10440 0.53 -3.1
722,686 + HMPREF1078_RS10440 0.64 -0.6
722,806 + HMPREF1078_RS10440 0.87 -0.8
722,806 + HMPREF1078_RS10440 0.87 -0.9
722,806 + HMPREF1078_RS10440 0.87 +1.2

Or see this region's nucleotide sequence