Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS10260 and HMPREF1078_RS10265 are separated by 85 nucleotides HMPREF1078_RS10265 and HMPREF1078_RS10270 are separated by 49 nucleotides HMPREF1078_RS10270 and HMPREF1078_RS10275 are separated by 83 nucleotides HMPREF1078_RS10275 and HMPREF1078_RS10280 are separated by 83 nucleotides
HMPREF1078_RS10260: HMPREF1078_RS10260 - CBS domain-containing protein, at 680,314 to 680,973
_RS10260
HMPREF1078_RS10265: HMPREF1078_RS10265 - pyridoxine 5'-phosphate synthase, at 681,059 to 681,775
_RS10265
HMPREF1078_RS10270: HMPREF1078_RS10270 - MotA/TolQ/ExbB proton channel family protein, at 681,825 to 682,535
_RS10270
HMPREF1078_RS10275: HMPREF1078_RS10275 - biopolymer transporter ExbD, at 682,619 to 683,029
_RS10275
HMPREF1078_RS10280: HMPREF1078_RS10280 - energy transducer TonB, at 683,113 to 683,967
_RS10280
Position (kb) 681
682
683 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 680.847 kb on - strand, within HMPREF1078_RS10260 at 680.849 kb on - strand, within HMPREF1078_RS10260 at 680.849 kb on - strand, within HMPREF1078_RS10260 at 680.910 kb on - strand at 680.982 kb on - strand at 680.982 kb on - strand at 680.982 kb on - strand at 680.995 kb on - strand at 681.001 kb on - strand at 681.069 kb on + strand at 681.082 kb on + strand at 681.124 kb on - strand at 681.132 kb on + strand, within HMPREF1078_RS10265 at 681.132 kb on + strand, within HMPREF1078_RS10265 at 681.141 kb on + strand, within HMPREF1078_RS10265 at 681.147 kb on + strand, within HMPREF1078_RS10265 at 681.178 kb on + strand, within HMPREF1078_RS10265 at 681.228 kb on - strand, within HMPREF1078_RS10265 at 681.228 kb on - strand, within HMPREF1078_RS10265 at 681.228 kb on - strand, within HMPREF1078_RS10265 at 681.228 kb on - strand, within HMPREF1078_RS10265 at 681.260 kb on - strand, within HMPREF1078_RS10265 at 681.264 kb on + strand, within HMPREF1078_RS10265 at 681.265 kb on - strand, within HMPREF1078_RS10265 at 681.265 kb on - strand, within HMPREF1078_RS10265 at 681.290 kb on - strand, within HMPREF1078_RS10265 at 681.291 kb on + strand, within HMPREF1078_RS10265 at 681.291 kb on + strand, within HMPREF1078_RS10265 at 681.291 kb on + strand, within HMPREF1078_RS10265 at 681.439 kb on + strand, within HMPREF1078_RS10265 at 681.439 kb on + strand, within HMPREF1078_RS10265 at 681.439 kb on + strand, within HMPREF1078_RS10265 at 681.440 kb on - strand, within HMPREF1078_RS10265 at 681.440 kb on - strand, within HMPREF1078_RS10265 at 681.440 kb on - strand, within HMPREF1078_RS10265 at 681.515 kb on + strand, within HMPREF1078_RS10265 at 681.516 kb on - strand, within HMPREF1078_RS10265 at 681.518 kb on + strand, within HMPREF1078_RS10265 at 681.539 kb on + strand, within HMPREF1078_RS10265 at 681.546 kb on + strand, within HMPREF1078_RS10265 at 681.615 kb on + strand, within HMPREF1078_RS10265 at 681.616 kb on - strand, within HMPREF1078_RS10265 at 681.654 kb on - strand, within HMPREF1078_RS10265 at 681.723 kb on - strand at 681.725 kb on + strand at 681.753 kb on - strand at 681.753 kb on - strand at 681.754 kb on + strand at 681.770 kb on + strand at 681.787 kb on + strand at 681.794 kb on + strand at 681.795 kb on - strand at 681.795 kb on - strand at 681.824 kb on + strand at 681.836 kb on - strand at 681.925 kb on + strand, within HMPREF1078_RS10270 at 681.925 kb on + strand, within HMPREF1078_RS10270 at 681.941 kb on + strand, within HMPREF1078_RS10270 at 681.967 kb on + strand, within HMPREF1078_RS10270 at 681.974 kb on - strand, within HMPREF1078_RS10270 at 681.974 kb on - strand, within HMPREF1078_RS10270 at 681.994 kb on - strand, within HMPREF1078_RS10270 at 681.995 kb on + strand, within HMPREF1078_RS10270 at 681.995 kb on + strand, within HMPREF1078_RS10270 at 681.996 kb on - strand, within HMPREF1078_RS10270 at 681.996 kb on - strand, within HMPREF1078_RS10270 at 681.997 kb on + strand, within HMPREF1078_RS10270 at 681.997 kb on + strand, within HMPREF1078_RS10270 at 682.154 kb on + strand, within HMPREF1078_RS10270 at 682.155 kb on - strand, within HMPREF1078_RS10270 at 682.291 kb on + strand, within HMPREF1078_RS10270 at 682.292 kb on - strand, within HMPREF1078_RS10270 at 682.295 kb on + strand, within HMPREF1078_RS10270 at 682.335 kb on - strand, within HMPREF1078_RS10270 at 682.351 kb on + strand, within HMPREF1078_RS10270 at 682.357 kb on + strand, within HMPREF1078_RS10270 at 682.358 kb on - strand, within HMPREF1078_RS10270 at 682.358 kb on - strand, within HMPREF1078_RS10270 at 682.376 kb on + strand, within HMPREF1078_RS10270 at 682.446 kb on + strand, within HMPREF1078_RS10270 at 682.446 kb on + strand, within HMPREF1078_RS10270 at 682.447 kb on - strand, within HMPREF1078_RS10270 at 682.505 kb on + strand at 682.514 kb on - strand at 682.563 kb on - strand at 682.576 kb on + strand at 682.577 kb on - strand at 682.577 kb on - strand at 682.577 kb on - strand at 682.577 kb on - strand at 682.584 kb on + strand at 682.584 kb on + strand at 682.585 kb on - strand at 682.585 kb on - strand at 682.598 kb on + strand at 682.605 kb on + strand at 682.684 kb on - strand, within HMPREF1078_RS10275 at 682.706 kb on - strand, within HMPREF1078_RS10275 at 682.712 kb on - strand, within HMPREF1078_RS10275 at 682.896 kb on - strand, within HMPREF1078_RS10275 at 682.896 kb on - strand, within HMPREF1078_RS10275 at 682.920 kb on + strand, within HMPREF1078_RS10275 at 682.952 kb on - strand, within HMPREF1078_RS10275 at 683.052 kb on + strand at 683.093 kb on + strand at 683.107 kb on + strand at 683.135 kb on + strand at 683.135 kb on + strand at 683.135 kb on + strand at 683.136 kb on - strand at 683.136 kb on - strand at 683.136 kb on - strand at 683.137 kb on + strand at 683.137 kb on + strand at 683.137 kb on + strand at 683.137 kb on + strand at 683.138 kb on - strand at 683.138 kb on - strand at 683.138 kb on - strand at 683.138 kb on - strand at 683.232 kb on + strand, within HMPREF1078_RS10280 at 683.234 kb on + strand, within HMPREF1078_RS10280 at 683.255 kb on + strand, within HMPREF1078_RS10280 at 683.289 kb on + strand, within HMPREF1078_RS10280
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 remove 680,847 - HMPREF1078_RS10260 0.81 +1.8 680,849 - HMPREF1078_RS10260 0.81 -1.5 680,849 - HMPREF1078_RS10260 0.81 -2.1 680,910 - -1.2 680,982 - -2.1 680,982 - -0.3 680,982 - -1.8 680,995 - -1.9 681,001 - -1.9 681,069 + -0.9 681,082 + -1.2 681,124 - +0.7 681,132 + HMPREF1078_RS10265 0.10 +1.2 681,132 + HMPREF1078_RS10265 0.10 -3.6 681,141 + HMPREF1078_RS10265 0.11 -3.0 681,147 + HMPREF1078_RS10265 0.12 -2.5 681,178 + HMPREF1078_RS10265 0.17 -1.7 681,228 - HMPREF1078_RS10265 0.24 -0.9 681,228 - HMPREF1078_RS10265 0.24 -0.1 681,228 - HMPREF1078_RS10265 0.24 -2.1 681,228 - HMPREF1078_RS10265 0.24 -0.1 681,260 - HMPREF1078_RS10265 0.28 -1.9 681,264 + HMPREF1078_RS10265 0.29 -2.0 681,265 - HMPREF1078_RS10265 0.29 -1.5 681,265 - HMPREF1078_RS10265 0.29 -1.2 681,290 - HMPREF1078_RS10265 0.32 -1.1 681,291 + HMPREF1078_RS10265 0.32 -2.4 681,291 + HMPREF1078_RS10265 0.32 -3.7 681,291 + HMPREF1078_RS10265 0.32 -0.6 681,439 + HMPREF1078_RS10265 0.53 -3.4 681,439 + HMPREF1078_RS10265 0.53 -2.7 681,439 + HMPREF1078_RS10265 0.53 -1.6 681,440 - HMPREF1078_RS10265 0.53 +0.2 681,440 - HMPREF1078_RS10265 0.53 +0.2 681,440 - HMPREF1078_RS10265 0.53 -1.5 681,515 + HMPREF1078_RS10265 0.64 -2.1 681,516 - HMPREF1078_RS10265 0.64 -2.5 681,518 + HMPREF1078_RS10265 0.64 -2.9 681,539 + HMPREF1078_RS10265 0.67 -0.1 681,546 + HMPREF1078_RS10265 0.68 -2.7 681,615 + HMPREF1078_RS10265 0.78 -1.5 681,616 - HMPREF1078_RS10265 0.78 -0.1 681,654 - HMPREF1078_RS10265 0.83 -1.5 681,723 - -1.5 681,725 + -1.3 681,753 - -1.5 681,753 - -0.8 681,754 + -3.5 681,770 + -1.1 681,787 + -2.7 681,794 + +0.8 681,795 - -0.6 681,795 - -1.6 681,824 + +0.2 681,836 - -0.1 681,925 + HMPREF1078_RS10270 0.14 -1.1 681,925 + HMPREF1078_RS10270 0.14 -1.5 681,941 + HMPREF1078_RS10270 0.16 -1.5 681,967 + HMPREF1078_RS10270 0.20 -2.1 681,974 - HMPREF1078_RS10270 0.21 -2.8 681,974 - HMPREF1078_RS10270 0.21 -0.1 681,994 - HMPREF1078_RS10270 0.24 -1.9 681,995 + HMPREF1078_RS10270 0.24 -0.6 681,995 + HMPREF1078_RS10270 0.24 -0.1 681,996 - HMPREF1078_RS10270 0.24 -0.3 681,996 - HMPREF1078_RS10270 0.24 -0.6 681,997 + HMPREF1078_RS10270 0.24 -2.5 681,997 + HMPREF1078_RS10270 0.24 -0.1 682,154 + HMPREF1078_RS10270 0.46 -0.6 682,155 - HMPREF1078_RS10270 0.46 -2.1 682,291 + HMPREF1078_RS10270 0.66 -1.1 682,292 - HMPREF1078_RS10270 0.66 -0.9 682,295 + HMPREF1078_RS10270 0.66 -0.8 682,335 - HMPREF1078_RS10270 0.72 -1.8 682,351 + HMPREF1078_RS10270 0.74 +0.2 682,357 + HMPREF1078_RS10270 0.75 -0.1 682,358 - HMPREF1078_RS10270 0.75 -1.2 682,358 - HMPREF1078_RS10270 0.75 -1.8 682,376 + HMPREF1078_RS10270 0.77 -1.8 682,446 + HMPREF1078_RS10270 0.87 -1.8 682,446 + HMPREF1078_RS10270 0.87 -1.1 682,447 - HMPREF1078_RS10270 0.87 -0.6 682,505 + -1.2 682,514 - +0.2 682,563 - -1.1 682,576 + -3.0 682,577 - -1.2 682,577 - -1.1 682,577 - +0.2 682,577 - -1.6 682,584 + -1.8 682,584 + -0.8 682,585 - +0.2 682,585 - -2.3 682,598 + +0.2 682,605 + +2.6 682,684 - HMPREF1078_RS10275 0.16 -0.6 682,706 - HMPREF1078_RS10275 0.21 +0.6 682,712 - HMPREF1078_RS10275 0.23 -1.5 682,896 - HMPREF1078_RS10275 0.67 -2.1 682,896 - HMPREF1078_RS10275 0.67 -1.1 682,920 + HMPREF1078_RS10275 0.73 -0.3 682,952 - HMPREF1078_RS10275 0.81 -1.6 683,052 + +0.6 683,093 + -0.5 683,107 + -2.4 683,135 + -1.6 683,135 + +0.2 683,135 + -3.0 683,136 - -0.6 683,136 - -0.9 683,136 - -0.8 683,137 + +0.7 683,137 + -0.8 683,137 + -1.5 683,137 + -1.1 683,138 - -1.6 683,138 - -2.2 683,138 - -1.7 683,138 - -2.8 683,232 + HMPREF1078_RS10280 0.14 -3.3 683,234 + HMPREF1078_RS10280 0.14 -0.3 683,255 + HMPREF1078_RS10280 0.17 -1.1 683,289 + HMPREF1078_RS10280 0.21 -0.6
Or see this region's nucleotide sequence