Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS06810

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS06805 and HMPREF1078_RS06810 are separated by 128 nucleotidesHMPREF1078_RS06810 and HMPREF1078_RS06815 overlap by 16 nucleotidesHMPREF1078_RS06815 and HMPREF1078_RS06820 are separated by 0 nucleotides HMPREF1078_RS06805: HMPREF1078_RS06805 - phosphoribosylamine--glycine ligase, at 765,569 to 766,840 _RS06805 HMPREF1078_RS06810: HMPREF1078_RS06810 - hypothetical protein, at 766,969 to 767,982 _RS06810 HMPREF1078_RS06815: HMPREF1078_RS06815 - VTT domain-containing protein, at 767,967 to 768,416 _RS06815 HMPREF1078_RS06820: HMPREF1078_RS06820 - DUF5036 family protein, at 768,417 to 769,130 _RS06820 Position (kb) 766 767 768Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 766.004 kb on + strand, within HMPREF1078_RS06805at 766.004 kb on + strand, within HMPREF1078_RS06805at 766.004 kb on + strand, within HMPREF1078_RS06805at 766.008 kb on + strand, within HMPREF1078_RS06805at 766.091 kb on - strand, within HMPREF1078_RS06805at 766.193 kb on + strand, within HMPREF1078_RS06805at 766.193 kb on + strand, within HMPREF1078_RS06805at 766.194 kb on - strand, within HMPREF1078_RS06805at 766.255 kb on + strand, within HMPREF1078_RS06805at 766.306 kb on + strand, within HMPREF1078_RS06805at 766.328 kb on - strand, within HMPREF1078_RS06805at 766.373 kb on + strand, within HMPREF1078_RS06805at 766.374 kb on - strand, within HMPREF1078_RS06805at 766.374 kb on - strand, within HMPREF1078_RS06805at 766.421 kb on - strand, within HMPREF1078_RS06805at 766.434 kb on - strand, within HMPREF1078_RS06805at 766.435 kb on + strand, within HMPREF1078_RS06805at 766.540 kb on + strand, within HMPREF1078_RS06805at 766.540 kb on + strand, within HMPREF1078_RS06805at 766.540 kb on + strand, within HMPREF1078_RS06805at 766.541 kb on - strand, within HMPREF1078_RS06805at 766.570 kb on - strand, within HMPREF1078_RS06805at 766.585 kb on - strand, within HMPREF1078_RS06805at 766.607 kb on + strand, within HMPREF1078_RS06805at 766.624 kb on + strand, within HMPREF1078_RS06805at 766.852 kb on - strandat 766.863 kb on + strandat 766.875 kb on + strandat 766.981 kb on + strandat 766.981 kb on + strandat 766.981 kb on + strandat 766.982 kb on - strandat 766.982 kb on - strandat 766.991 kb on - strandat 767.049 kb on + strandat 767.049 kb on + strandat 767.049 kb on + strandat 767.050 kb on - strandat 767.071 kb on + strand, within HMPREF1078_RS06810at 767.168 kb on - strand, within HMPREF1078_RS06810at 767.169 kb on + strand, within HMPREF1078_RS06810at 767.169 kb on + strand, within HMPREF1078_RS06810at 767.170 kb on - strand, within HMPREF1078_RS06810at 767.224 kb on + strand, within HMPREF1078_RS06810at 767.224 kb on + strand, within HMPREF1078_RS06810at 767.225 kb on - strand, within HMPREF1078_RS06810at 767.228 kb on + strand, within HMPREF1078_RS06810at 767.229 kb on - strand, within HMPREF1078_RS06810at 767.229 kb on - strand, within HMPREF1078_RS06810at 767.240 kb on + strand, within HMPREF1078_RS06810at 767.272 kb on + strand, within HMPREF1078_RS06810at 767.272 kb on + strand, within HMPREF1078_RS06810at 767.273 kb on - strand, within HMPREF1078_RS06810at 767.290 kb on - strand, within HMPREF1078_RS06810at 767.318 kb on - strand, within HMPREF1078_RS06810at 767.374 kb on + strand, within HMPREF1078_RS06810at 767.374 kb on + strand, within HMPREF1078_RS06810at 767.375 kb on - strand, within HMPREF1078_RS06810at 767.375 kb on - strand, within HMPREF1078_RS06810at 767.375 kb on - strand, within HMPREF1078_RS06810at 767.375 kb on - strand, within HMPREF1078_RS06810at 767.404 kb on + strand, within HMPREF1078_RS06810at 767.430 kb on - strand, within HMPREF1078_RS06810at 767.535 kb on - strand, within HMPREF1078_RS06810at 767.551 kb on + strand, within HMPREF1078_RS06810at 767.551 kb on + strand, within HMPREF1078_RS06810at 767.654 kb on + strand, within HMPREF1078_RS06810at 767.955 kb on - strandat 767.963 kb on + strandat 767.965 kb on - strandat 767.980 kb on + strandat 767.982 kb on + strandat 767.991 kb on + strandat 767.992 kb on - strandat 767.993 kb on + strandat 767.993 kb on + strandat 767.994 kb on - strandat 767.994 kb on - strandat 767.994 kb on - strandat 768.098 kb on + strand, within HMPREF1078_RS06815at 768.115 kb on + strand, within HMPREF1078_RS06815at 768.115 kb on + strand, within HMPREF1078_RS06815at 768.119 kb on + strand, within HMPREF1078_RS06815at 768.156 kb on - strand, within HMPREF1078_RS06815at 768.187 kb on - strand, within HMPREF1078_RS06815at 768.280 kb on + strand, within HMPREF1078_RS06815at 768.395 kb on + strandat 768.396 kb on - strandat 768.434 kb on - strandat 768.434 kb on - strandat 768.435 kb on + strandat 768.435 kb on + strandat 768.436 kb on - strandat 768.445 kb on + strandat 768.446 kb on - strandat 768.446 kb on - strandat 768.446 kb on - strandat 768.466 kb on + strandat 768.522 kb on + strand, within HMPREF1078_RS06820at 768.571 kb on + strand, within HMPREF1078_RS06820at 768.745 kb on + strand, within HMPREF1078_RS06820at 768.747 kb on + strand, within HMPREF1078_RS06820at 768.757 kb on + strand, within HMPREF1078_RS06820at 768.757 kb on + strand, within HMPREF1078_RS06820at 768.758 kb on - strand, within HMPREF1078_RS06820at 768.829 kb on + strand, within HMPREF1078_RS06820at 768.970 kb on + strand, within HMPREF1078_RS06820at 768.970 kb on + strand, within HMPREF1078_RS06820at 768.971 kb on - strand, within HMPREF1078_RS06820at 768.971 kb on - strand, within HMPREF1078_RS06820at 768.971 kb on - strand, within HMPREF1078_RS06820at 768.971 kb on - strand, within HMPREF1078_RS06820

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3
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766,004 + HMPREF1078_RS06805 0.34 -4.2
766,004 + HMPREF1078_RS06805 0.34 -3.6
766,004 + HMPREF1078_RS06805 0.34 -3.6
766,008 + HMPREF1078_RS06805 0.35 -4.1
766,091 - HMPREF1078_RS06805 0.41 -3.3
766,193 + HMPREF1078_RS06805 0.49 -3.2
766,193 + HMPREF1078_RS06805 0.49 -2.9
766,194 - HMPREF1078_RS06805 0.49 -3.3
766,255 + HMPREF1078_RS06805 0.54 -4.3
766,306 + HMPREF1078_RS06805 0.58 -3.9
766,328 - HMPREF1078_RS06805 0.60 -4.3
766,373 + HMPREF1078_RS06805 0.63 -3.3
766,374 - HMPREF1078_RS06805 0.63 -5.5
766,374 - HMPREF1078_RS06805 0.63 -5.3
766,421 - HMPREF1078_RS06805 0.67 -2.6
766,434 - HMPREF1078_RS06805 0.68 -4.2
766,435 + HMPREF1078_RS06805 0.68 -4.7
766,540 + HMPREF1078_RS06805 0.76 -4.2
766,540 + HMPREF1078_RS06805 0.76 -3.9
766,540 + HMPREF1078_RS06805 0.76 -4.3
766,541 - HMPREF1078_RS06805 0.76 -1.9
766,570 - HMPREF1078_RS06805 0.79 -2.5
766,585 - HMPREF1078_RS06805 0.80 -3.7
766,607 + HMPREF1078_RS06805 0.82 -3.2
766,624 + HMPREF1078_RS06805 0.83 -3.8
766,852 - -3.8
766,863 + -3.0
766,875 + -3.1
766,981 + -2.2
766,981 + -1.8
766,981 + -0.3
766,982 - -2.9
766,982 - -1.6
766,991 - -4.2
767,049 + -2.3
767,049 + -3.6
767,049 + -2.2
767,050 - -3.3
767,071 + HMPREF1078_RS06810 0.10 -1.0
767,168 - HMPREF1078_RS06810 0.20 -3.8
767,169 + HMPREF1078_RS06810 0.20 -3.7
767,169 + HMPREF1078_RS06810 0.20 -3.3
767,170 - HMPREF1078_RS06810 0.20 -4.5
767,224 + HMPREF1078_RS06810 0.25 -1.0
767,224 + HMPREF1078_RS06810 0.25 -3.9
767,225 - HMPREF1078_RS06810 0.25 -1.2
767,228 + HMPREF1078_RS06810 0.26 -0.4
767,229 - HMPREF1078_RS06810 0.26 -2.8
767,229 - HMPREF1078_RS06810 0.26 -4.0
767,240 + HMPREF1078_RS06810 0.27 -2.0
767,272 + HMPREF1078_RS06810 0.30 -3.2
767,272 + HMPREF1078_RS06810 0.30 -5.2
767,273 - HMPREF1078_RS06810 0.30 -2.5
767,290 - HMPREF1078_RS06810 0.32 -2.6
767,318 - HMPREF1078_RS06810 0.34 -2.4
767,374 + HMPREF1078_RS06810 0.40 -1.4
767,374 + HMPREF1078_RS06810 0.40 -4.6
767,375 - HMPREF1078_RS06810 0.40 -1.2
767,375 - HMPREF1078_RS06810 0.40 -3.8
767,375 - HMPREF1078_RS06810 0.40 -4.1
767,375 - HMPREF1078_RS06810 0.40 -2.4
767,404 + HMPREF1078_RS06810 0.43 -2.6
767,430 - HMPREF1078_RS06810 0.45 -2.8
767,535 - HMPREF1078_RS06810 0.56 -2.6
767,551 + HMPREF1078_RS06810 0.57 -2.9
767,551 + HMPREF1078_RS06810 0.57 -0.8
767,654 + HMPREF1078_RS06810 0.68 -2.6
767,955 - +0.4
767,963 + -1.4
767,965 - +2.3
767,980 + +0.5
767,982 + -1.1
767,991 + +0.1
767,992 - -3.1
767,993 + -1.6
767,993 + +1.6
767,994 - +0.0
767,994 - -0.2
767,994 - -0.4
768,098 + HMPREF1078_RS06815 0.29 -0.1
768,115 + HMPREF1078_RS06815 0.33 +1.8
768,115 + HMPREF1078_RS06815 0.33 -2.5
768,119 + HMPREF1078_RS06815 0.34 +0.5
768,156 - HMPREF1078_RS06815 0.42 +1.0
768,187 - HMPREF1078_RS06815 0.49 +0.0
768,280 + HMPREF1078_RS06815 0.70 +0.3
768,395 + +2.0
768,396 - +0.8
768,434 - +1.6
768,434 - -0.6
768,435 + -0.6
768,435 + +0.3
768,436 - +0.1
768,445 + -2.6
768,446 - +1.2
768,446 - -1.3
768,446 - +1.5
768,466 + -0.6
768,522 + HMPREF1078_RS06820 0.15 -0.8
768,571 + HMPREF1078_RS06820 0.22 +1.0
768,745 + HMPREF1078_RS06820 0.46 -2.0
768,747 + HMPREF1078_RS06820 0.46 -0.0
768,757 + HMPREF1078_RS06820 0.48 -0.4
768,757 + HMPREF1078_RS06820 0.48 -1.7
768,758 - HMPREF1078_RS06820 0.48 +0.3
768,829 + HMPREF1078_RS06820 0.58 +0.0
768,970 + HMPREF1078_RS06820 0.77 -1.1
768,970 + HMPREF1078_RS06820 0.77 -0.3
768,971 - HMPREF1078_RS06820 0.78 +0.5
768,971 - HMPREF1078_RS06820 0.78 +1.0
768,971 - HMPREF1078_RS06820 0.78 +1.0
768,971 - HMPREF1078_RS06820 0.78 +1.1

Or see this region's nucleotide sequence