Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS06800 and HMPREF1078_RS06805 are separated by 131 nucleotides HMPREF1078_RS06805 and HMPREF1078_RS06810 are separated by 128 nucleotides
HMPREF1078_RS06800: HMPREF1078_RS06800 - S9 family peptidase, at 763,236 to 765,437
_RS06800
HMPREF1078_RS06805: HMPREF1078_RS06805 - phosphoribosylamine--glycine ligase, at 765,569 to 766,840
_RS06805
HMPREF1078_RS06810: HMPREF1078_RS06810 - hypothetical protein, at 766,969 to 767,982
_RS06810
Position (kb) 765
766
767 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 764.763 kb on + strand, within HMPREF1078_RS06800 at 764.778 kb on + strand, within HMPREF1078_RS06800 at 764.778 kb on + strand, within HMPREF1078_RS06800 at 764.834 kb on - strand, within HMPREF1078_RS06800 at 764.850 kb on + strand, within HMPREF1078_RS06800 at 764.850 kb on + strand, within HMPREF1078_RS06800 at 764.851 kb on - strand, within HMPREF1078_RS06800 at 764.852 kb on + strand, within HMPREF1078_RS06800 at 764.868 kb on + strand, within HMPREF1078_RS06800 at 764.869 kb on - strand, within HMPREF1078_RS06800 at 764.932 kb on + strand, within HMPREF1078_RS06800 at 764.933 kb on - strand, within HMPREF1078_RS06800 at 765.003 kb on + strand, within HMPREF1078_RS06800 at 765.004 kb on - strand, within HMPREF1078_RS06800 at 765.043 kb on - strand, within HMPREF1078_RS06800 at 765.053 kb on + strand, within HMPREF1078_RS06800 at 765.053 kb on + strand, within HMPREF1078_RS06800 at 765.054 kb on - strand, within HMPREF1078_RS06800 at 765.143 kb on + strand, within HMPREF1078_RS06800 at 765.143 kb on + strand, within HMPREF1078_RS06800 at 765.147 kb on + strand, within HMPREF1078_RS06800 at 765.147 kb on + strand, within HMPREF1078_RS06800 at 765.148 kb on - strand, within HMPREF1078_RS06800 at 765.161 kb on + strand, within HMPREF1078_RS06800 at 765.162 kb on - strand, within HMPREF1078_RS06800 at 765.194 kb on + strand, within HMPREF1078_RS06800 at 765.195 kb on - strand, within HMPREF1078_RS06800 at 765.324 kb on - strand at 765.324 kb on - strand at 765.327 kb on + strand at 765.327 kb on + strand at 765.328 kb on - strand at 765.393 kb on + strand at 765.394 kb on - strand at 765.404 kb on - strand at 765.473 kb on - strand at 765.473 kb on - strand at 765.488 kb on - strand at 765.488 kb on - strand at 765.529 kb on - strand at 765.529 kb on - strand at 765.652 kb on - strand at 765.676 kb on + strand at 765.676 kb on + strand at 765.676 kb on + strand at 765.688 kb on - strand at 765.688 kb on - strand at 765.699 kb on + strand, within HMPREF1078_RS06805 at 765.700 kb on - strand, within HMPREF1078_RS06805 at 765.703 kb on + strand, within HMPREF1078_RS06805 at 765.704 kb on - strand, within HMPREF1078_RS06805 at 765.727 kb on + strand, within HMPREF1078_RS06805 at 765.728 kb on - strand, within HMPREF1078_RS06805 at 765.728 kb on - strand, within HMPREF1078_RS06805 at 765.771 kb on + strand, within HMPREF1078_RS06805 at 765.771 kb on + strand, within HMPREF1078_RS06805 at 765.772 kb on - strand, within HMPREF1078_RS06805 at 765.772 kb on - strand, within HMPREF1078_RS06805 at 765.803 kb on + strand, within HMPREF1078_RS06805 at 765.803 kb on + strand, within HMPREF1078_RS06805 at 765.803 kb on + strand, within HMPREF1078_RS06805 at 765.804 kb on - strand, within HMPREF1078_RS06805 at 765.804 kb on - strand, within HMPREF1078_RS06805 at 765.804 kb on - strand, within HMPREF1078_RS06805 at 765.804 kb on - strand, within HMPREF1078_RS06805 at 765.804 kb on - strand, within HMPREF1078_RS06805 at 765.838 kb on + strand, within HMPREF1078_RS06805 at 765.849 kb on + strand, within HMPREF1078_RS06805 at 765.850 kb on - strand, within HMPREF1078_RS06805 at 765.850 kb on - strand, within HMPREF1078_RS06805 at 765.940 kb on + strand, within HMPREF1078_RS06805 at 765.940 kb on + strand, within HMPREF1078_RS06805 at 765.940 kb on + strand, within HMPREF1078_RS06805 at 765.941 kb on - strand, within HMPREF1078_RS06805 at 766.004 kb on + strand, within HMPREF1078_RS06805 at 766.004 kb on + strand, within HMPREF1078_RS06805 at 766.004 kb on + strand, within HMPREF1078_RS06805 at 766.008 kb on + strand, within HMPREF1078_RS06805 at 766.091 kb on - strand, within HMPREF1078_RS06805 at 766.193 kb on + strand, within HMPREF1078_RS06805 at 766.193 kb on + strand, within HMPREF1078_RS06805 at 766.194 kb on - strand, within HMPREF1078_RS06805 at 766.255 kb on + strand, within HMPREF1078_RS06805 at 766.306 kb on + strand, within HMPREF1078_RS06805 at 766.328 kb on - strand, within HMPREF1078_RS06805 at 766.373 kb on + strand, within HMPREF1078_RS06805 at 766.374 kb on - strand, within HMPREF1078_RS06805 at 766.374 kb on - strand, within HMPREF1078_RS06805 at 766.421 kb on - strand, within HMPREF1078_RS06805 at 766.434 kb on - strand, within HMPREF1078_RS06805 at 766.435 kb on + strand, within HMPREF1078_RS06805 at 766.540 kb on + strand, within HMPREF1078_RS06805 at 766.540 kb on + strand, within HMPREF1078_RS06805 at 766.540 kb on + strand, within HMPREF1078_RS06805 at 766.541 kb on - strand, within HMPREF1078_RS06805 at 766.570 kb on - strand, within HMPREF1078_RS06805 at 766.585 kb on - strand, within HMPREF1078_RS06805 at 766.607 kb on + strand, within HMPREF1078_RS06805 at 766.624 kb on + strand, within HMPREF1078_RS06805 at 766.852 kb on - strand at 766.863 kb on + strand at 766.875 kb on + strand at 766.981 kb on + strand at 766.981 kb on + strand at 766.981 kb on + strand at 766.982 kb on - strand at 766.982 kb on - strand at 766.991 kb on - strand at 767.049 kb on + strand at 767.049 kb on + strand at 767.049 kb on + strand at 767.050 kb on - strand at 767.071 kb on + strand, within HMPREF1078_RS06810 at 767.168 kb on - strand, within HMPREF1078_RS06810 at 767.169 kb on + strand, within HMPREF1078_RS06810 at 767.169 kb on + strand, within HMPREF1078_RS06810 at 767.170 kb on - strand, within HMPREF1078_RS06810 at 767.224 kb on + strand, within HMPREF1078_RS06810 at 767.224 kb on + strand, within HMPREF1078_RS06810 at 767.225 kb on - strand, within HMPREF1078_RS06810 at 767.228 kb on + strand, within HMPREF1078_RS06810 at 767.229 kb on - strand, within HMPREF1078_RS06810 at 767.229 kb on - strand, within HMPREF1078_RS06810 at 767.240 kb on + strand, within HMPREF1078_RS06810 at 767.272 kb on + strand, within HMPREF1078_RS06810 at 767.272 kb on + strand, within HMPREF1078_RS06810 at 767.273 kb on - strand, within HMPREF1078_RS06810 at 767.290 kb on - strand, within HMPREF1078_RS06810 at 767.318 kb on - strand, within HMPREF1078_RS06810 at 767.374 kb on + strand, within HMPREF1078_RS06810 at 767.374 kb on + strand, within HMPREF1078_RS06810 at 767.375 kb on - strand, within HMPREF1078_RS06810 at 767.375 kb on - strand, within HMPREF1078_RS06810 at 767.375 kb on - strand, within HMPREF1078_RS06810 at 767.375 kb on - strand, within HMPREF1078_RS06810 at 767.404 kb on + strand, within HMPREF1078_RS06810 at 767.430 kb on - strand, within HMPREF1078_RS06810 at 767.535 kb on - strand, within HMPREF1078_RS06810 at 767.551 kb on + strand, within HMPREF1078_RS06810 at 767.551 kb on + strand, within HMPREF1078_RS06810 at 767.654 kb on + strand, within HMPREF1078_RS06810
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 remove 764,763 + HMPREF1078_RS06800 0.69 +1.1 764,778 + HMPREF1078_RS06800 0.70 +1.4 764,778 + HMPREF1078_RS06800 0.70 +0.7 764,834 - HMPREF1078_RS06800 0.73 -5.2 764,850 + HMPREF1078_RS06800 0.73 +1.2 764,850 + HMPREF1078_RS06800 0.73 -2.4 764,851 - HMPREF1078_RS06800 0.73 -2.8 764,852 + HMPREF1078_RS06800 0.73 +2.3 764,868 + HMPREF1078_RS06800 0.74 -0.8 764,869 - HMPREF1078_RS06800 0.74 -0.3 764,932 + HMPREF1078_RS06800 0.77 +0.6 764,933 - HMPREF1078_RS06800 0.77 -5.0 765,003 + HMPREF1078_RS06800 0.80 -0.2 765,004 - HMPREF1078_RS06800 0.80 -5.8 765,043 - HMPREF1078_RS06800 0.82 -4.1 765,053 + HMPREF1078_RS06800 0.83 -0.4 765,053 + HMPREF1078_RS06800 0.83 -1.3 765,054 - HMPREF1078_RS06800 0.83 -6.4 765,143 + HMPREF1078_RS06800 0.87 -1.6 765,143 + HMPREF1078_RS06800 0.87 +0.8 765,147 + HMPREF1078_RS06800 0.87 -1.0 765,147 + HMPREF1078_RS06800 0.87 -0.9 765,148 - HMPREF1078_RS06800 0.87 -4.0 765,161 + HMPREF1078_RS06800 0.87 +0.8 765,162 - HMPREF1078_RS06800 0.87 -3.1 765,194 + HMPREF1078_RS06800 0.89 -1.6 765,195 - HMPREF1078_RS06800 0.89 -3.4 765,324 - -5.9 765,324 - -5.1 765,327 + +1.6 765,327 + +0.9 765,328 - -1.6 765,393 + -0.6 765,394 - -2.7 765,404 - -3.6 765,473 - -3.8 765,473 - -3.9 765,488 - +0.0 765,488 - -4.8 765,529 - -5.2 765,529 - -4.2 765,652 - -3.5 765,676 + -4.1 765,676 + -4.4 765,676 + -2.3 765,688 - -3.9 765,688 - -5.0 765,699 + HMPREF1078_RS06805 0.10 -1.0 765,700 - HMPREF1078_RS06805 0.10 -4.9 765,703 + HMPREF1078_RS06805 0.11 -0.8 765,704 - HMPREF1078_RS06805 0.11 -3.6 765,727 + HMPREF1078_RS06805 0.12 -3.4 765,728 - HMPREF1078_RS06805 0.12 -4.1 765,728 - HMPREF1078_RS06805 0.12 -2.6 765,771 + HMPREF1078_RS06805 0.16 -4.2 765,771 + HMPREF1078_RS06805 0.16 -2.8 765,772 - HMPREF1078_RS06805 0.16 -4.1 765,772 - HMPREF1078_RS06805 0.16 -3.1 765,803 + HMPREF1078_RS06805 0.18 -3.2 765,803 + HMPREF1078_RS06805 0.18 -4.7 765,803 + HMPREF1078_RS06805 0.18 -3.5 765,804 - HMPREF1078_RS06805 0.18 -4.3 765,804 - HMPREF1078_RS06805 0.18 -6.2 765,804 - HMPREF1078_RS06805 0.18 -3.9 765,804 - HMPREF1078_RS06805 0.18 -5.9 765,804 - HMPREF1078_RS06805 0.18 -4.8 765,838 + HMPREF1078_RS06805 0.21 -5.6 765,849 + HMPREF1078_RS06805 0.22 -4.1 765,850 - HMPREF1078_RS06805 0.22 -3.8 765,850 - HMPREF1078_RS06805 0.22 -4.8 765,940 + HMPREF1078_RS06805 0.29 -2.0 765,940 + HMPREF1078_RS06805 0.29 -2.9 765,940 + HMPREF1078_RS06805 0.29 -5.3 765,941 - HMPREF1078_RS06805 0.29 -5.4 766,004 + HMPREF1078_RS06805 0.34 -4.2 766,004 + HMPREF1078_RS06805 0.34 -3.6 766,004 + HMPREF1078_RS06805 0.34 -3.6 766,008 + HMPREF1078_RS06805 0.35 -4.1 766,091 - HMPREF1078_RS06805 0.41 -3.3 766,193 + HMPREF1078_RS06805 0.49 -3.2 766,193 + HMPREF1078_RS06805 0.49 -2.9 766,194 - HMPREF1078_RS06805 0.49 -3.3 766,255 + HMPREF1078_RS06805 0.54 -4.3 766,306 + HMPREF1078_RS06805 0.58 -3.9 766,328 - HMPREF1078_RS06805 0.60 -4.3 766,373 + HMPREF1078_RS06805 0.63 -3.3 766,374 - HMPREF1078_RS06805 0.63 -5.5 766,374 - HMPREF1078_RS06805 0.63 -5.3 766,421 - HMPREF1078_RS06805 0.67 -2.6 766,434 - HMPREF1078_RS06805 0.68 -4.2 766,435 + HMPREF1078_RS06805 0.68 -4.7 766,540 + HMPREF1078_RS06805 0.76 -4.2 766,540 + HMPREF1078_RS06805 0.76 -3.9 766,540 + HMPREF1078_RS06805 0.76 -4.3 766,541 - HMPREF1078_RS06805 0.76 -1.9 766,570 - HMPREF1078_RS06805 0.79 -2.5 766,585 - HMPREF1078_RS06805 0.80 -3.7 766,607 + HMPREF1078_RS06805 0.82 -3.2 766,624 + HMPREF1078_RS06805 0.83 -3.8 766,852 - -3.8 766,863 + -3.0 766,875 + -3.1 766,981 + -2.2 766,981 + -1.8 766,981 + -0.3 766,982 - -2.9 766,982 - -1.6 766,991 - -4.2 767,049 + -2.3 767,049 + -3.6 767,049 + -2.2 767,050 - -3.3 767,071 + HMPREF1078_RS06810 0.10 -1.0 767,168 - HMPREF1078_RS06810 0.20 -3.8 767,169 + HMPREF1078_RS06810 0.20 -3.7 767,169 + HMPREF1078_RS06810 0.20 -3.3 767,170 - HMPREF1078_RS06810 0.20 -4.5 767,224 + HMPREF1078_RS06810 0.25 -1.0 767,224 + HMPREF1078_RS06810 0.25 -3.9 767,225 - HMPREF1078_RS06810 0.25 -1.2 767,228 + HMPREF1078_RS06810 0.26 -0.4 767,229 - HMPREF1078_RS06810 0.26 -2.8 767,229 - HMPREF1078_RS06810 0.26 -4.0 767,240 + HMPREF1078_RS06810 0.27 -2.0 767,272 + HMPREF1078_RS06810 0.30 -3.2 767,272 + HMPREF1078_RS06810 0.30 -5.2 767,273 - HMPREF1078_RS06810 0.30 -2.5 767,290 - HMPREF1078_RS06810 0.32 -2.6 767,318 - HMPREF1078_RS06810 0.34 -2.4 767,374 + HMPREF1078_RS06810 0.40 -1.4 767,374 + HMPREF1078_RS06810 0.40 -4.6 767,375 - HMPREF1078_RS06810 0.40 -1.2 767,375 - HMPREF1078_RS06810 0.40 -3.8 767,375 - HMPREF1078_RS06810 0.40 -4.1 767,375 - HMPREF1078_RS06810 0.40 -2.4 767,404 + HMPREF1078_RS06810 0.43 -2.6 767,430 - HMPREF1078_RS06810 0.45 -2.8 767,535 - HMPREF1078_RS06810 0.56 -2.6 767,551 + HMPREF1078_RS06810 0.57 -2.9 767,551 + HMPREF1078_RS06810 0.57 -0.8 767,654 + HMPREF1078_RS06810 0.68 -2.6
Or see this region's nucleotide sequence