Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS06595

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS06590 and HMPREF1078_RS06595 are separated by 114 nucleotidesHMPREF1078_RS06595 and HMPREF1078_RS06600 are separated by 115 nucleotides HMPREF1078_RS06590: HMPREF1078_RS06590 - sulfatase, at 705,507 to 707,051 _RS06590 HMPREF1078_RS06595: HMPREF1078_RS06595 - DUF362 domain-containing protein, at 707,166 to 708,200 _RS06595 HMPREF1078_RS06600: HMPREF1078_RS06600 - DUF4221 family protein, at 708,316 to 709,350 _RS06600 Position (kb) 707 708 709Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 706.246 kb on + strand, within HMPREF1078_RS06590at 706.263 kb on - strand, within HMPREF1078_RS06590at 706.263 kb on - strand, within HMPREF1078_RS06590at 706.263 kb on - strand, within HMPREF1078_RS06590at 706.274 kb on + strand, within HMPREF1078_RS06590at 706.275 kb on - strand, within HMPREF1078_RS06590at 706.275 kb on - strand, within HMPREF1078_RS06590at 706.275 kb on - strand, within HMPREF1078_RS06590at 706.297 kb on + strand, within HMPREF1078_RS06590at 706.445 kb on + strand, within HMPREF1078_RS06590at 706.453 kb on + strand, within HMPREF1078_RS06590at 706.454 kb on - strand, within HMPREF1078_RS06590at 706.638 kb on - strand, within HMPREF1078_RS06590at 706.673 kb on - strand, within HMPREF1078_RS06590at 706.687 kb on - strand, within HMPREF1078_RS06590at 706.816 kb on + strand, within HMPREF1078_RS06590at 707.022 kb on + strandat 707.072 kb on + strandat 707.073 kb on - strandat 707.074 kb on + strandat 707.074 kb on + strandat 707.074 kb on + strandat 707.074 kb on + strandat 707.095 kb on + strandat 707.095 kb on + strandat 707.095 kb on + strandat 707.096 kb on - strandat 707.106 kb on + strandat 707.106 kb on + strandat 707.107 kb on - strandat 707.107 kb on - strandat 707.107 kb on - strandat 707.107 kb on - strandat 707.110 kb on + strandat 707.110 kb on + strandat 707.111 kb on - strandat 707.111 kb on - strandat 707.167 kb on + strandat 707.168 kb on - strandat 707.175 kb on + strandat 707.175 kb on + strandat 707.175 kb on + strandat 707.175 kb on + strandat 707.176 kb on - strandat 707.176 kb on - strandat 707.178 kb on + strandat 707.191 kb on + strandat 707.276 kb on + strand, within HMPREF1078_RS06595at 707.308 kb on + strand, within HMPREF1078_RS06595at 707.308 kb on + strand, within HMPREF1078_RS06595at 707.309 kb on - strand, within HMPREF1078_RS06595at 707.309 kb on - strand, within HMPREF1078_RS06595at 707.313 kb on + strand, within HMPREF1078_RS06595at 707.340 kb on + strand, within HMPREF1078_RS06595at 707.433 kb on + strand, within HMPREF1078_RS06595at 707.442 kb on - strand, within HMPREF1078_RS06595at 707.465 kb on - strand, within HMPREF1078_RS06595at 707.472 kb on + strand, within HMPREF1078_RS06595at 707.568 kb on - strand, within HMPREF1078_RS06595at 707.622 kb on + strand, within HMPREF1078_RS06595at 707.711 kb on + strand, within HMPREF1078_RS06595at 707.712 kb on - strand, within HMPREF1078_RS06595at 707.713 kb on + strand, within HMPREF1078_RS06595at 707.713 kb on + strand, within HMPREF1078_RS06595at 707.713 kb on + strand, within HMPREF1078_RS06595at 707.713 kb on + strand, within HMPREF1078_RS06595at 707.713 kb on + strand, within HMPREF1078_RS06595at 707.714 kb on - strand, within HMPREF1078_RS06595at 707.729 kb on + strand, within HMPREF1078_RS06595at 707.784 kb on + strand, within HMPREF1078_RS06595at 707.784 kb on + strand, within HMPREF1078_RS06595at 707.819 kb on + strand, within HMPREF1078_RS06595at 707.872 kb on - strand, within HMPREF1078_RS06595at 707.884 kb on - strand, within HMPREF1078_RS06595at 707.899 kb on - strand, within HMPREF1078_RS06595at 708.147 kb on + strandat 708.147 kb on + strandat 708.148 kb on - strandat 708.152 kb on + strandat 708.153 kb on - strandat 708.203 kb on - strandat 708.203 kb on - strandat 708.248 kb on + strandat 708.257 kb on - strandat 708.257 kb on - strandat 708.278 kb on + strandat 708.286 kb on + strandat 708.287 kb on - strandat 708.290 kb on - strandat 708.399 kb on - strandat 708.400 kb on + strandat 708.436 kb on - strand, within HMPREF1078_RS06600at 708.438 kb on - strand, within HMPREF1078_RS06600at 708.441 kb on + strand, within HMPREF1078_RS06600at 708.496 kb on - strand, within HMPREF1078_RS06600at 708.496 kb on - strand, within HMPREF1078_RS06600at 708.584 kb on + strand, within HMPREF1078_RS06600at 708.619 kb on - strand, within HMPREF1078_RS06600at 708.619 kb on - strand, within HMPREF1078_RS06600at 708.621 kb on - strand, within HMPREF1078_RS06600at 708.689 kb on + strand, within HMPREF1078_RS06600at 708.690 kb on - strand, within HMPREF1078_RS06600at 708.694 kb on - strand, within HMPREF1078_RS06600at 708.743 kb on + strand, within HMPREF1078_RS06600at 708.743 kb on + strand, within HMPREF1078_RS06600at 708.744 kb on - strand, within HMPREF1078_RS06600at 708.748 kb on - strand, within HMPREF1078_RS06600at 708.803 kb on + strand, within HMPREF1078_RS06600at 708.803 kb on + strand, within HMPREF1078_RS06600at 708.804 kb on - strand, within HMPREF1078_RS06600at 708.887 kb on + strand, within HMPREF1078_RS06600at 708.891 kb on + strand, within HMPREF1078_RS06600at 708.897 kb on + strand, within HMPREF1078_RS06600at 708.898 kb on - strand, within HMPREF1078_RS06600at 708.898 kb on - strand, within HMPREF1078_RS06600at 708.898 kb on - strand, within HMPREF1078_RS06600at 708.946 kb on + strand, within HMPREF1078_RS06600at 708.946 kb on + strand, within HMPREF1078_RS06600at 708.946 kb on + strand, within HMPREF1078_RS06600at 708.946 kb on + strand, within HMPREF1078_RS06600at 708.947 kb on - strand, within HMPREF1078_RS06600at 708.947 kb on - strand, within HMPREF1078_RS06600at 708.955 kb on - strand, within HMPREF1078_RS06600at 708.956 kb on + strand, within HMPREF1078_RS06600at 708.956 kb on + strand, within HMPREF1078_RS06600at 708.958 kb on + strand, within HMPREF1078_RS06600at 708.958 kb on + strand, within HMPREF1078_RS06600at 708.958 kb on + strand, within HMPREF1078_RS06600at 708.959 kb on - strand, within HMPREF1078_RS06600at 708.959 kb on - strand, within HMPREF1078_RS06600at 708.959 kb on - strand, within HMPREF1078_RS06600at 708.959 kb on - strand, within HMPREF1078_RS06600at 708.959 kb on - strand, within HMPREF1078_RS06600at 708.959 kb on - strand, within HMPREF1078_RS06600at 708.959 kb on - strand, within HMPREF1078_RS06600at 708.959 kb on - strand, within HMPREF1078_RS06600at 708.959 kb on - strand, within HMPREF1078_RS06600at 708.959 kb on - strand, within HMPREF1078_RS06600at 708.973 kb on - strand, within HMPREF1078_RS06600at 708.976 kb on + strand, within HMPREF1078_RS06600at 708.982 kb on + strand, within HMPREF1078_RS06600at 708.982 kb on + strand, within HMPREF1078_RS06600at 708.982 kb on + strand, within HMPREF1078_RS06600at 708.983 kb on - strand, within HMPREF1078_RS06600at 708.983 kb on - strand, within HMPREF1078_RS06600at 709.059 kb on + strand, within HMPREF1078_RS06600at 709.063 kb on - strand, within HMPREF1078_RS06600at 709.070 kb on + strand, within HMPREF1078_RS06600at 709.070 kb on + strand, within HMPREF1078_RS06600at 709.071 kb on - strand, within HMPREF1078_RS06600at 709.073 kb on - strand, within HMPREF1078_RS06600at 709.100 kb on + strand, within HMPREF1078_RS06600at 709.105 kb on - strand, within HMPREF1078_RS06600at 709.124 kb on + strand, within HMPREF1078_RS06600at 709.125 kb on - strand, within HMPREF1078_RS06600

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3
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706,246 + HMPREF1078_RS06590 0.48 -0.0
706,263 - HMPREF1078_RS06590 0.49 +0.6
706,263 - HMPREF1078_RS06590 0.49 -0.7
706,263 - HMPREF1078_RS06590 0.49 +2.3
706,274 + HMPREF1078_RS06590 0.50 +1.6
706,275 - HMPREF1078_RS06590 0.50 -1.0
706,275 - HMPREF1078_RS06590 0.50 +1.9
706,275 - HMPREF1078_RS06590 0.50 +0.7
706,297 + HMPREF1078_RS06590 0.51 -1.0
706,445 + HMPREF1078_RS06590 0.61 +1.0
706,453 + HMPREF1078_RS06590 0.61 -0.3
706,454 - HMPREF1078_RS06590 0.61 -1.0
706,638 - HMPREF1078_RS06590 0.73 +0.3
706,673 - HMPREF1078_RS06590 0.75 +3.0
706,687 - HMPREF1078_RS06590 0.76 +1.8
706,816 + HMPREF1078_RS06590 0.85 +0.6
707,022 + +1.1
707,072 + +0.3
707,073 - -1.5
707,074 + -4.1
707,074 + +1.3
707,074 + +0.7
707,074 + +2.9
707,095 + +0.6
707,095 + +0.8
707,095 + +2.2
707,096 - +1.7
707,106 + +0.7
707,106 + +1.1
707,107 - +1.5
707,107 - +0.1
707,107 - -0.6
707,107 - -0.2
707,110 + +0.2
707,110 + +1.2
707,111 - +1.0
707,111 - -0.3
707,167 + -1.1
707,168 - -1.3
707,175 + -4.1
707,175 + -3.7
707,175 + -1.9
707,175 + +0.3
707,176 - -2.7
707,176 - +0.6
707,178 + -0.4
707,191 + +0.2
707,276 + HMPREF1078_RS06595 0.11 +0.7
707,308 + HMPREF1078_RS06595 0.14 -0.3
707,308 + HMPREF1078_RS06595 0.14 +1.2
707,309 - HMPREF1078_RS06595 0.14 +0.0
707,309 - HMPREF1078_RS06595 0.14 +0.6
707,313 + HMPREF1078_RS06595 0.14 -1.3
707,340 + HMPREF1078_RS06595 0.17 -0.9
707,433 + HMPREF1078_RS06595 0.26 +1.2
707,442 - HMPREF1078_RS06595 0.27 -1.7
707,465 - HMPREF1078_RS06595 0.29 +1.8
707,472 + HMPREF1078_RS06595 0.30 +1.3
707,568 - HMPREF1078_RS06595 0.39 -0.5
707,622 + HMPREF1078_RS06595 0.44 -0.8
707,711 + HMPREF1078_RS06595 0.53 -0.3
707,712 - HMPREF1078_RS06595 0.53 +1.0
707,713 + HMPREF1078_RS06595 0.53 +0.9
707,713 + HMPREF1078_RS06595 0.53 +0.7
707,713 + HMPREF1078_RS06595 0.53 +0.1
707,713 + HMPREF1078_RS06595 0.53 +1.3
707,713 + HMPREF1078_RS06595 0.53 -0.5
707,714 - HMPREF1078_RS06595 0.53 -4.9
707,729 + HMPREF1078_RS06595 0.54 -3.4
707,784 + HMPREF1078_RS06595 0.60 -0.5
707,784 + HMPREF1078_RS06595 0.60 +1.7
707,819 + HMPREF1078_RS06595 0.63 +3.2
707,872 - HMPREF1078_RS06595 0.68 +3.3
707,884 - HMPREF1078_RS06595 0.69 +1.4
707,899 - HMPREF1078_RS06595 0.71 -0.8
708,147 + +0.7
708,147 + +2.1
708,148 - +0.7
708,152 + +0.4
708,153 - +1.8
708,203 - +1.0
708,203 - +1.8
708,248 + +0.0
708,257 - +2.5
708,257 - -2.3
708,278 + -0.5
708,286 + +2.7
708,287 - -1.8
708,290 - -0.2
708,399 - -1.3
708,400 + +1.2
708,436 - HMPREF1078_RS06600 0.12 -1.5
708,438 - HMPREF1078_RS06600 0.12 -0.4
708,441 + HMPREF1078_RS06600 0.12 -0.3
708,496 - HMPREF1078_RS06600 0.17 -0.3
708,496 - HMPREF1078_RS06600 0.17 -3.9
708,584 + HMPREF1078_RS06600 0.26 +0.9
708,619 - HMPREF1078_RS06600 0.29 -1.0
708,619 - HMPREF1078_RS06600 0.29 -3.0
708,621 - HMPREF1078_RS06600 0.29 -0.2
708,689 + HMPREF1078_RS06600 0.36 +0.5
708,690 - HMPREF1078_RS06600 0.36 +0.0
708,694 - HMPREF1078_RS06600 0.37 +0.9
708,743 + HMPREF1078_RS06600 0.41 -2.2
708,743 + HMPREF1078_RS06600 0.41 -0.5
708,744 - HMPREF1078_RS06600 0.41 +1.0
708,748 - HMPREF1078_RS06600 0.42 +0.5
708,803 + HMPREF1078_RS06600 0.47 +3.4
708,803 + HMPREF1078_RS06600 0.47 -1.3
708,804 - HMPREF1078_RS06600 0.47 -1.6
708,887 + HMPREF1078_RS06600 0.55 +1.4
708,891 + HMPREF1078_RS06600 0.56 +1.4
708,897 + HMPREF1078_RS06600 0.56 -2.0
708,898 - HMPREF1078_RS06600 0.56 -2.1
708,898 - HMPREF1078_RS06600 0.56 +2.6
708,898 - HMPREF1078_RS06600 0.56 +0.5
708,946 + HMPREF1078_RS06600 0.61 -1.0
708,946 + HMPREF1078_RS06600 0.61 -0.1
708,946 + HMPREF1078_RS06600 0.61 -3.5
708,946 + HMPREF1078_RS06600 0.61 +0.8
708,947 - HMPREF1078_RS06600 0.61 +1.4
708,947 - HMPREF1078_RS06600 0.61 +2.6
708,955 - HMPREF1078_RS06600 0.62 +0.7
708,956 + HMPREF1078_RS06600 0.62 +0.1
708,956 + HMPREF1078_RS06600 0.62 -1.6
708,958 + HMPREF1078_RS06600 0.62 +0.5
708,958 + HMPREF1078_RS06600 0.62 +2.4
708,958 + HMPREF1078_RS06600 0.62 +1.4
708,959 - HMPREF1078_RS06600 0.62 +0.0
708,959 - HMPREF1078_RS06600 0.62 -0.5
708,959 - HMPREF1078_RS06600 0.62 -1.4
708,959 - HMPREF1078_RS06600 0.62 -1.9
708,959 - HMPREF1078_RS06600 0.62 +1.3
708,959 - HMPREF1078_RS06600 0.62 -0.8
708,959 - HMPREF1078_RS06600 0.62 -1.1
708,959 - HMPREF1078_RS06600 0.62 +0.0
708,959 - HMPREF1078_RS06600 0.62 -0.8
708,959 - HMPREF1078_RS06600 0.62 +0.0
708,973 - HMPREF1078_RS06600 0.63 -1.6
708,976 + HMPREF1078_RS06600 0.64 -0.3
708,982 + HMPREF1078_RS06600 0.64 -0.2
708,982 + HMPREF1078_RS06600 0.64 +2.3
708,982 + HMPREF1078_RS06600 0.64 +1.4
708,983 - HMPREF1078_RS06600 0.64 -0.2
708,983 - HMPREF1078_RS06600 0.64 +0.9
709,059 + HMPREF1078_RS06600 0.72 -0.5
709,063 - HMPREF1078_RS06600 0.72 -3.9
709,070 + HMPREF1078_RS06600 0.73 +0.5
709,070 + HMPREF1078_RS06600 0.73 -3.5
709,071 - HMPREF1078_RS06600 0.73 +1.1
709,073 - HMPREF1078_RS06600 0.73 -1.3
709,100 + HMPREF1078_RS06600 0.76 -3.3
709,105 - HMPREF1078_RS06600 0.76 -0.4
709,124 + HMPREF1078_RS06600 0.78 -0.4
709,125 - HMPREF1078_RS06600 0.78 -3.4

Or see this region's nucleotide sequence