Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS06340 and HMPREF1078_RS06345 are separated by 144 nucleotides HMPREF1078_RS06345 and HMPREF1078_RS06350 are separated by 21 nucleotides
HMPREF1078_RS06340: HMPREF1078_RS06340 - hypothetical protein, at 631,698 to 632,369
_RS06340
HMPREF1078_RS06345: HMPREF1078_RS06345 - redox-regulated ATPase YchF, at 632,514 to 633,617
_RS06345
HMPREF1078_RS06350: HMPREF1078_RS06350 - DUF1080 domain-containing protein, at 633,639 to 635,054
_RS06350
Position (kb) 632
633
634 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5
6 at 631.518 kb on + strand at 631.518 kb on + strand at 631.545 kb on + strand at 631.547 kb on + strand at 631.548 kb on - strand at 631.548 kb on - strand at 631.549 kb on + strand at 631.549 kb on + strand at 631.549 kb on + strand at 631.551 kb on + strand at 631.551 kb on + strand at 631.552 kb on - strand at 631.553 kb on + strand at 631.553 kb on + strand at 631.553 kb on + strand at 631.553 kb on + strand at 631.553 kb on + strand at 631.553 kb on + strand at 631.553 kb on + strand at 631.557 kb on + strand at 631.557 kb on + strand at 631.558 kb on - strand at 631.558 kb on - strand at 631.558 kb on - strand at 631.560 kb on + strand at 631.561 kb on - strand at 631.562 kb on + strand at 631.563 kb on - strand at 631.564 kb on + strand at 631.565 kb on - strand at 631.590 kb on - strand at 631.600 kb on + strand at 631.601 kb on - strand at 631.601 kb on - strand at 631.698 kb on - strand at 631.779 kb on + strand, within HMPREF1078_RS06340 at 631.779 kb on + strand, within HMPREF1078_RS06340 at 631.780 kb on - strand, within HMPREF1078_RS06340 at 631.780 kb on - strand, within HMPREF1078_RS06340 at 631.786 kb on - strand, within HMPREF1078_RS06340 at 631.789 kb on + strand, within HMPREF1078_RS06340 at 631.896 kb on + strand, within HMPREF1078_RS06340 at 631.899 kb on + strand, within HMPREF1078_RS06340 at 631.899 kb on + strand, within HMPREF1078_RS06340 at 631.899 kb on + strand, within HMPREF1078_RS06340 at 631.900 kb on - strand, within HMPREF1078_RS06340 at 631.900 kb on - strand, within HMPREF1078_RS06340 at 631.900 kb on - strand, within HMPREF1078_RS06340 at 631.919 kb on + strand, within HMPREF1078_RS06340 at 631.919 kb on + strand, within HMPREF1078_RS06340 at 631.934 kb on + strand, within HMPREF1078_RS06340 at 632.028 kb on - strand, within HMPREF1078_RS06340 at 632.028 kb on - strand, within HMPREF1078_RS06340 at 632.030 kb on - strand, within HMPREF1078_RS06340 at 632.050 kb on - strand, within HMPREF1078_RS06340 at 632.071 kb on + strand, within HMPREF1078_RS06340 at 632.091 kb on + strand, within HMPREF1078_RS06340 at 632.110 kb on - strand, within HMPREF1078_RS06340 at 632.177 kb on - strand, within HMPREF1078_RS06340 at 632.237 kb on - strand, within HMPREF1078_RS06340 at 632.238 kb on + strand, within HMPREF1078_RS06340 at 632.288 kb on - strand, within HMPREF1078_RS06340 at 632.321 kb on - strand at 632.460 kb on + strand at 632.460 kb on + strand at 632.461 kb on - strand at 632.463 kb on - strand at 632.493 kb on - strand at 632.499 kb on + strand at 632.510 kb on + strand at 632.521 kb on + strand at 632.521 kb on + strand at 632.522 kb on - strand at 632.522 kb on - strand at 632.536 kb on + strand at 632.604 kb on - strand at 632.619 kb on - strand at 632.709 kb on - strand, within HMPREF1078_RS06345 at 632.711 kb on + strand, within HMPREF1078_RS06345 at 632.712 kb on - strand, within HMPREF1078_RS06345 at 632.712 kb on - strand, within HMPREF1078_RS06345 at 632.712 kb on - strand, within HMPREF1078_RS06345 at 632.821 kb on + strand, within HMPREF1078_RS06345 at 632.821 kb on + strand, within HMPREF1078_RS06345 at 633.000 kb on + strand, within HMPREF1078_RS06345 at 633.007 kb on + strand, within HMPREF1078_RS06345 at 633.008 kb on - strand, within HMPREF1078_RS06345 at 633.018 kb on + strand, within HMPREF1078_RS06345 at 633.042 kb on - strand, within HMPREF1078_RS06345 at 633.042 kb on - strand, within HMPREF1078_RS06345 at 633.100 kb on + strand, within HMPREF1078_RS06345 at 633.100 kb on + strand, within HMPREF1078_RS06345 at 633.100 kb on + strand, within HMPREF1078_RS06345 at 633.129 kb on + strand, within HMPREF1078_RS06345 at 633.129 kb on + strand, within HMPREF1078_RS06345 at 633.129 kb on + strand, within HMPREF1078_RS06345 at 633.130 kb on - strand, within HMPREF1078_RS06345 at 633.130 kb on - strand, within HMPREF1078_RS06345 at 633.142 kb on + strand, within HMPREF1078_RS06345 at 633.174 kb on + strand, within HMPREF1078_RS06345 at 633.175 kb on - strand, within HMPREF1078_RS06345 at 633.199 kb on + strand, within HMPREF1078_RS06345 at 633.292 kb on + strand, within HMPREF1078_RS06345 at 633.504 kb on + strand, within HMPREF1078_RS06345 at 633.504 kb on + strand, within HMPREF1078_RS06345 at 633.504 kb on + strand, within HMPREF1078_RS06345 at 633.506 kb on + strand, within HMPREF1078_RS06345 at 633.532 kb on + strand at 633.533 kb on - strand at 633.570 kb on + strand at 633.570 kb on + strand at 633.570 kb on + strand at 633.571 kb on - strand at 633.572 kb on + strand at 633.573 kb on - strand at 633.590 kb on + strand at 633.608 kb on + strand at 633.608 kb on + strand at 633.609 kb on - strand at 633.616 kb on - strand at 633.638 kb on + strand at 633.638 kb on + strand at 633.661 kb on + strand at 633.661 kb on + strand at 633.662 kb on - strand at 633.662 kb on - strand at 633.664 kb on + strand at 633.664 kb on + strand at 633.665 kb on - strand at 633.679 kb on + strand at 633.680 kb on - strand at 633.680 kb on - strand at 633.683 kb on + strand at 633.683 kb on + strand at 633.683 kb on + strand at 633.683 kb on + strand at 633.683 kb on + strand at 633.684 kb on - strand at 633.684 kb on - strand at 633.684 kb on - strand at 633.684 kb on - strand at 633.706 kb on + strand at 633.706 kb on + strand at 633.711 kb on + strand at 633.711 kb on + strand at 633.730 kb on + strand at 633.730 kb on + strand at 633.820 kb on - strand, within HMPREF1078_RS06350 at 633.820 kb on - strand, within HMPREF1078_RS06350 at 633.830 kb on + strand, within HMPREF1078_RS06350 at 633.832 kb on + strand, within HMPREF1078_RS06350 at 633.833 kb on - strand, within HMPREF1078_RS06350 at 633.833 kb on - strand, within HMPREF1078_RS06350 at 633.916 kb on + strand, within HMPREF1078_RS06350 at 633.916 kb on + strand, within HMPREF1078_RS06350 at 633.917 kb on - strand, within HMPREF1078_RS06350 at 633.995 kb on - strand, within HMPREF1078_RS06350 at 634.048 kb on + strand, within HMPREF1078_RS06350 at 634.048 kb on + strand, within HMPREF1078_RS06350 at 634.048 kb on + strand, within HMPREF1078_RS06350 at 634.048 kb on + strand, within HMPREF1078_RS06350 at 634.049 kb on - strand, within HMPREF1078_RS06350 at 634.075 kb on + strand, within HMPREF1078_RS06350 at 634.075 kb on + strand, within HMPREF1078_RS06350 at 634.076 kb on - strand, within HMPREF1078_RS06350 at 634.076 kb on - strand, within HMPREF1078_RS06350 at 634.078 kb on + strand, within HMPREF1078_RS06350 at 634.078 kb on + strand, within HMPREF1078_RS06350 at 634.078 kb on + strand, within HMPREF1078_RS06350 at 634.078 kb on + strand, within HMPREF1078_RS06350 at 634.078 kb on + strand, within HMPREF1078_RS06350 at 634.078 kb on + strand, within HMPREF1078_RS06350 at 634.078 kb on + strand, within HMPREF1078_RS06350 at 634.079 kb on - strand, within HMPREF1078_RS06350 at 634.079 kb on - strand, within HMPREF1078_RS06350 at 634.079 kb on - strand, within HMPREF1078_RS06350 at 634.079 kb on - strand, within HMPREF1078_RS06350 at 634.083 kb on + strand, within HMPREF1078_RS06350 at 634.084 kb on - strand, within HMPREF1078_RS06350 at 634.110 kb on - strand, within HMPREF1078_RS06350 at 634.120 kb on - strand, within HMPREF1078_RS06350 at 634.148 kb on + strand, within HMPREF1078_RS06350 at 634.149 kb on - strand, within HMPREF1078_RS06350 at 634.164 kb on - strand, within HMPREF1078_RS06350 at 634.177 kb on + strand, within HMPREF1078_RS06350 at 634.178 kb on - strand, within HMPREF1078_RS06350 at 634.178 kb on - strand, within HMPREF1078_RS06350 at 634.303 kb on + strand, within HMPREF1078_RS06350 at 634.303 kb on + strand, within HMPREF1078_RS06350 at 634.303 kb on + strand, within HMPREF1078_RS06350 at 634.304 kb on - strand, within HMPREF1078_RS06350 at 634.304 kb on - strand, within HMPREF1078_RS06350 at 634.304 kb on - strand, within HMPREF1078_RS06350 at 634.368 kb on + strand, within HMPREF1078_RS06350 at 634.369 kb on - strand, within HMPREF1078_RS06350 at 634.369 kb on - strand, within HMPREF1078_RS06350 at 634.380 kb on + strand, within HMPREF1078_RS06350 at 634.380 kb on + strand, within HMPREF1078_RS06350 at 634.380 kb on + strand, within HMPREF1078_RS06350 at 634.422 kb on - strand, within HMPREF1078_RS06350 at 634.446 kb on + strand, within HMPREF1078_RS06350 at 634.447 kb on - strand, within HMPREF1078_RS06350 at 634.508 kb on + strand, within HMPREF1078_RS06350 at 634.508 kb on + strand, within HMPREF1078_RS06350 at 634.554 kb on + strand, within HMPREF1078_RS06350 at 634.609 kb on + strand, within HMPREF1078_RS06350 at 634.609 kb on + strand, within HMPREF1078_RS06350 at 634.610 kb on - strand, within HMPREF1078_RS06350 at 634.610 kb on - strand, within HMPREF1078_RS06350 at 634.611 kb on + strand, within HMPREF1078_RS06350 at 634.612 kb on - strand, within HMPREF1078_RS06350
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 remove 631,518 + +0.4 631,518 + +1.5 631,545 + -0.8 631,547 + -0.0 631,548 - -1.3 631,548 - -1.1 631,549 + +1.1 631,549 + -1.5 631,549 + -0.6 631,551 + -0.6 631,551 + -0.3 631,552 - +1.1 631,553 + +0.3 631,553 + -0.6 631,553 + +1.7 631,553 + -3.3 631,553 + +0.1 631,553 + -0.1 631,553 + -1.4 631,557 + +1.3 631,557 + -3.5 631,558 - +0.1 631,558 - -1.9 631,558 - -0.0 631,560 + +0.9 631,561 - -0.4 631,562 + +2.0 631,563 - +1.8 631,564 + +0.4 631,565 - -0.6 631,590 - +0.9 631,600 + +0.1 631,601 - -2.8 631,601 - +0.8 631,698 - -1.5 631,779 + HMPREF1078_RS06340 0.12 +1.8 631,779 + HMPREF1078_RS06340 0.12 -3.1 631,780 - HMPREF1078_RS06340 0.12 +0.2 631,780 - HMPREF1078_RS06340 0.12 -2.4 631,786 - HMPREF1078_RS06340 0.13 -0.4 631,789 + HMPREF1078_RS06340 0.14 -0.5 631,896 + HMPREF1078_RS06340 0.29 -2.3 631,899 + HMPREF1078_RS06340 0.30 +2.7 631,899 + HMPREF1078_RS06340 0.30 +0.8 631,899 + HMPREF1078_RS06340 0.30 -2.5 631,900 - HMPREF1078_RS06340 0.30 -1.0 631,900 - HMPREF1078_RS06340 0.30 +0.2 631,900 - HMPREF1078_RS06340 0.30 -2.9 631,919 + HMPREF1078_RS06340 0.33 +1.0 631,919 + HMPREF1078_RS06340 0.33 +1.6 631,934 + HMPREF1078_RS06340 0.35 +1.0 632,028 - HMPREF1078_RS06340 0.49 +0.8 632,028 - HMPREF1078_RS06340 0.49 +1.7 632,030 - HMPREF1078_RS06340 0.49 +0.0 632,050 - HMPREF1078_RS06340 0.52 -0.0 632,071 + HMPREF1078_RS06340 0.56 +0.9 632,091 + HMPREF1078_RS06340 0.58 +0.6 632,110 - HMPREF1078_RS06340 0.61 +0.6 632,177 - HMPREF1078_RS06340 0.71 +0.0 632,237 - HMPREF1078_RS06340 0.80 -0.8 632,238 + HMPREF1078_RS06340 0.80 -1.4 632,288 - HMPREF1078_RS06340 0.88 -2.6 632,321 - -1.7 632,460 + +0.0 632,460 + -2.0 632,461 - -2.7 632,463 - -4.0 632,493 - -2.7 632,499 + -0.2 632,510 + -3.1 632,521 + -0.8 632,521 + -2.4 632,522 - -3.5 632,522 - -2.0 632,536 + +1.0 632,604 - -2.1 632,619 - -2.9 632,709 - HMPREF1078_RS06345 0.18 -2.4 632,711 + HMPREF1078_RS06345 0.18 -2.1 632,712 - HMPREF1078_RS06345 0.18 -2.1 632,712 - HMPREF1078_RS06345 0.18 -1.7 632,712 - HMPREF1078_RS06345 0.18 -1.0 632,821 + HMPREF1078_RS06345 0.28 -3.5 632,821 + HMPREF1078_RS06345 0.28 -2.8 633,000 + HMPREF1078_RS06345 0.44 -4.5 633,007 + HMPREF1078_RS06345 0.45 -3.8 633,008 - HMPREF1078_RS06345 0.45 -1.4 633,018 + HMPREF1078_RS06345 0.46 -4.0 633,042 - HMPREF1078_RS06345 0.48 -1.9 633,042 - HMPREF1078_RS06345 0.48 -2.6 633,100 + HMPREF1078_RS06345 0.53 -0.3 633,100 + HMPREF1078_RS06345 0.53 -1.6 633,100 + HMPREF1078_RS06345 0.53 -2.9 633,129 + HMPREF1078_RS06345 0.56 -3.3 633,129 + HMPREF1078_RS06345 0.56 -4.2 633,129 + HMPREF1078_RS06345 0.56 -1.9 633,130 - HMPREF1078_RS06345 0.56 -4.5 633,130 - HMPREF1078_RS06345 0.56 -4.1 633,142 + HMPREF1078_RS06345 0.57 -1.3 633,174 + HMPREF1078_RS06345 0.60 -2.9 633,175 - HMPREF1078_RS06345 0.60 -1.4 633,199 + HMPREF1078_RS06345 0.62 -3.6 633,292 + HMPREF1078_RS06345 0.70 -2.8 633,504 + HMPREF1078_RS06345 0.90 -2.1 633,504 + HMPREF1078_RS06345 0.90 -0.3 633,504 + HMPREF1078_RS06345 0.90 -0.6 633,506 + HMPREF1078_RS06345 0.90 -0.6 633,532 + -2.7 633,533 - -3.4 633,570 + -5.1 633,570 + -0.3 633,570 + -4.2 633,571 - -3.7 633,572 + -0.8 633,573 - -3.4 633,590 + -4.4 633,608 + +1.1 633,608 + +2.4 633,609 - -0.1 633,616 - +0.9 633,638 + +1.6 633,638 + -0.9 633,661 + +1.7 633,661 + +0.4 633,662 - +0.9 633,662 - -0.9 633,664 + -1.9 633,664 + -0.7 633,665 - +1.4 633,679 + +0.9 633,680 - -2.1 633,680 - +0.1 633,683 + -0.4 633,683 + +1.3 633,683 + +1.5 633,683 + +1.5 633,683 + +1.0 633,684 - -1.5 633,684 - +0.2 633,684 - +0.5 633,684 - -1.7 633,706 + +0.4 633,706 + +0.9 633,711 + +1.9 633,711 + +1.7 633,730 + +1.4 633,730 + -3.2 633,820 - HMPREF1078_RS06350 0.13 -0.2 633,820 - HMPREF1078_RS06350 0.13 -4.1 633,830 + HMPREF1078_RS06350 0.13 -1.8 633,832 + HMPREF1078_RS06350 0.14 +0.3 633,833 - HMPREF1078_RS06350 0.14 -1.3 633,833 - HMPREF1078_RS06350 0.14 +0.8 633,916 + HMPREF1078_RS06350 0.20 -1.9 633,916 + HMPREF1078_RS06350 0.20 -1.1 633,917 - HMPREF1078_RS06350 0.20 -4.1 633,995 - HMPREF1078_RS06350 0.25 +1.6 634,048 + HMPREF1078_RS06350 0.29 +1.1 634,048 + HMPREF1078_RS06350 0.29 +0.7 634,048 + HMPREF1078_RS06350 0.29 -0.6 634,048 + HMPREF1078_RS06350 0.29 -0.4 634,049 - HMPREF1078_RS06350 0.29 +1.2 634,075 + HMPREF1078_RS06350 0.31 +0.3 634,075 + HMPREF1078_RS06350 0.31 +0.8 634,076 - HMPREF1078_RS06350 0.31 -0.4 634,076 - HMPREF1078_RS06350 0.31 +1.5 634,078 + HMPREF1078_RS06350 0.31 +1.0 634,078 + HMPREF1078_RS06350 0.31 +1.1 634,078 + HMPREF1078_RS06350 0.31 -0.8 634,078 + HMPREF1078_RS06350 0.31 -1.5 634,078 + HMPREF1078_RS06350 0.31 +1.2 634,078 + HMPREF1078_RS06350 0.31 -1.8 634,078 + HMPREF1078_RS06350 0.31 +0.4 634,079 - HMPREF1078_RS06350 0.31 +1.7 634,079 - HMPREF1078_RS06350 0.31 +2.9 634,079 - HMPREF1078_RS06350 0.31 -0.0 634,079 - HMPREF1078_RS06350 0.31 -0.5 634,083 + HMPREF1078_RS06350 0.31 -2.1 634,084 - HMPREF1078_RS06350 0.31 +1.5 634,110 - HMPREF1078_RS06350 0.33 -0.9 634,120 - HMPREF1078_RS06350 0.34 -0.0 634,148 + HMPREF1078_RS06350 0.36 -0.2 634,149 - HMPREF1078_RS06350 0.36 -1.7 634,164 - HMPREF1078_RS06350 0.37 -0.3 634,177 + HMPREF1078_RS06350 0.38 -0.6 634,178 - HMPREF1078_RS06350 0.38 -2.5 634,178 - HMPREF1078_RS06350 0.38 +2.0 634,303 + HMPREF1078_RS06350 0.47 +0.0 634,303 + HMPREF1078_RS06350 0.47 +0.5 634,303 + HMPREF1078_RS06350 0.47 -0.4 634,304 - HMPREF1078_RS06350 0.47 +0.0 634,304 - HMPREF1078_RS06350 0.47 +3.6 634,304 - HMPREF1078_RS06350 0.47 +1.0 634,368 + HMPREF1078_RS06350 0.51 -0.6 634,369 - HMPREF1078_RS06350 0.52 -0.1 634,369 - HMPREF1078_RS06350 0.52 +1.2 634,380 + HMPREF1078_RS06350 0.52 -1.1 634,380 + HMPREF1078_RS06350 0.52 -2.4 634,380 + HMPREF1078_RS06350 0.52 +0.3 634,422 - HMPREF1078_RS06350 0.55 +1.4 634,446 + HMPREF1078_RS06350 0.57 -0.3 634,447 - HMPREF1078_RS06350 0.57 -3.4 634,508 + HMPREF1078_RS06350 0.61 +5.8 634,508 + HMPREF1078_RS06350 0.61 -0.3 634,554 + HMPREF1078_RS06350 0.65 +1.8 634,609 + HMPREF1078_RS06350 0.69 +0.0 634,609 + HMPREF1078_RS06350 0.69 +0.6 634,610 - HMPREF1078_RS06350 0.69 -0.3 634,610 - HMPREF1078_RS06350 0.69 +1.8 634,611 + HMPREF1078_RS06350 0.69 +1.1 634,612 - HMPREF1078_RS06350 0.69 -2.8
Or see this region's nucleotide sequence