Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS06070 and HMPREF1078_RS06075 are separated by 133 nucleotides HMPREF1078_RS06075 and HMPREF1078_RS06080 are separated by 818 nucleotides
HMPREF1078_RS06070: HMPREF1078_RS06070 - helix-turn-helix domain-containing protein, at 557,529 to 558,404
_RS06070
HMPREF1078_RS06075: HMPREF1078_RS06075 - glycoside hydrolase family 2 TIM barrel-domain containing protein, at 558,538 to 561,945
_RS06075
HMPREF1078_RS06080: HMPREF1078_RS06080 - IS3 family transposase, at 562,764 to 563,672
_RS06080
Position (kb) 558
559
560
561
562 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 557.576 kb on + strand at 557.689 kb on + strand, within HMPREF1078_RS06070 at 557.795 kb on - strand, within HMPREF1078_RS06070 at 557.809 kb on + strand, within HMPREF1078_RS06070 at 557.809 kb on + strand, within HMPREF1078_RS06070 at 557.854 kb on + strand, within HMPREF1078_RS06070 at 557.876 kb on - strand, within HMPREF1078_RS06070 at 557.900 kb on - strand, within HMPREF1078_RS06070 at 557.903 kb on - strand, within HMPREF1078_RS06070 at 557.903 kb on - strand, within HMPREF1078_RS06070 at 557.918 kb on - strand, within HMPREF1078_RS06070 at 557.926 kb on + strand, within HMPREF1078_RS06070 at 557.927 kb on - strand, within HMPREF1078_RS06070 at 557.957 kb on + strand, within HMPREF1078_RS06070 at 557.957 kb on + strand, within HMPREF1078_RS06070 at 557.958 kb on - strand, within HMPREF1078_RS06070 at 557.958 kb on - strand, within HMPREF1078_RS06070 at 557.958 kb on - strand, within HMPREF1078_RS06070 at 557.988 kb on - strand, within HMPREF1078_RS06070 at 558.143 kb on + strand, within HMPREF1078_RS06070 at 558.143 kb on + strand, within HMPREF1078_RS06070 at 558.144 kb on - strand, within HMPREF1078_RS06070 at 558.195 kb on - strand, within HMPREF1078_RS06070 at 558.238 kb on + strand, within HMPREF1078_RS06070 at 558.417 kb on + strand at 558.418 kb on - strand at 558.418 kb on - strand at 558.462 kb on - strand at 558.497 kb on + strand at 558.506 kb on + strand at 558.531 kb on + strand at 558.609 kb on - strand at 558.611 kb on + strand at 558.612 kb on - strand at 558.612 kb on - strand at 558.612 kb on - strand at 558.807 kb on + strand at 558.958 kb on - strand, within HMPREF1078_RS06075 at 558.963 kb on - strand, within HMPREF1078_RS06075 at 559.092 kb on + strand, within HMPREF1078_RS06075 at 559.094 kb on + strand, within HMPREF1078_RS06075 at 559.111 kb on + strand, within HMPREF1078_RS06075 at 559.145 kb on - strand, within HMPREF1078_RS06075 at 559.201 kb on - strand, within HMPREF1078_RS06075 at 559.265 kb on - strand, within HMPREF1078_RS06075 at 559.411 kb on + strand, within HMPREF1078_RS06075 at 559.436 kb on + strand, within HMPREF1078_RS06075 at 559.577 kb on + strand, within HMPREF1078_RS06075 at 559.613 kb on + strand, within HMPREF1078_RS06075 at 559.614 kb on - strand, within HMPREF1078_RS06075 at 559.691 kb on + strand, within HMPREF1078_RS06075 at 559.691 kb on + strand, within HMPREF1078_RS06075 at 559.691 kb on + strand, within HMPREF1078_RS06075 at 559.691 kb on + strand, within HMPREF1078_RS06075 at 559.694 kb on - strand, within HMPREF1078_RS06075 at 559.713 kb on - strand, within HMPREF1078_RS06075 at 559.842 kb on + strand, within HMPREF1078_RS06075 at 559.844 kb on + strand, within HMPREF1078_RS06075 at 559.844 kb on + strand, within HMPREF1078_RS06075 at 559.845 kb on - strand, within HMPREF1078_RS06075 at 559.848 kb on + strand, within HMPREF1078_RS06075 at 559.849 kb on - strand, within HMPREF1078_RS06075 at 559.849 kb on - strand, within HMPREF1078_RS06075 at 559.849 kb on - strand, within HMPREF1078_RS06075 at 559.860 kb on + strand, within HMPREF1078_RS06075 at 559.925 kb on + strand, within HMPREF1078_RS06075 at 559.953 kb on - strand, within HMPREF1078_RS06075 at 559.986 kb on + strand, within HMPREF1078_RS06075 at 559.987 kb on - strand, within HMPREF1078_RS06075 at 559.987 kb on - strand, within HMPREF1078_RS06075 at 559.988 kb on + strand, within HMPREF1078_RS06075 at 560.057 kb on + strand, within HMPREF1078_RS06075 at 560.134 kb on - strand, within HMPREF1078_RS06075 at 560.141 kb on + strand, within HMPREF1078_RS06075 at 560.225 kb on + strand, within HMPREF1078_RS06075 at 560.226 kb on - strand, within HMPREF1078_RS06075 at 560.235 kb on - strand, within HMPREF1078_RS06075 at 560.530 kb on + strand, within HMPREF1078_RS06075 at 560.611 kb on - strand, within HMPREF1078_RS06075 at 560.611 kb on - strand, within HMPREF1078_RS06075 at 560.614 kb on + strand, within HMPREF1078_RS06075 at 560.782 kb on - strand, within HMPREF1078_RS06075 at 560.798 kb on + strand, within HMPREF1078_RS06075 at 560.866 kb on + strand, within HMPREF1078_RS06075 at 560.903 kb on - strand, within HMPREF1078_RS06075 at 561.263 kb on + strand, within HMPREF1078_RS06075 at 561.326 kb on + strand, within HMPREF1078_RS06075 at 561.357 kb on + strand, within HMPREF1078_RS06075 at 561.359 kb on + strand, within HMPREF1078_RS06075 at 561.360 kb on - strand, within HMPREF1078_RS06075 at 561.362 kb on - strand, within HMPREF1078_RS06075 at 561.414 kb on + strand, within HMPREF1078_RS06075 at 561.414 kb on + strand, within HMPREF1078_RS06075 at 561.579 kb on - strand, within HMPREF1078_RS06075 at 561.579 kb on - strand, within HMPREF1078_RS06075 at 561.700 kb on + strand at 561.700 kb on + strand at 561.701 kb on - strand at 561.703 kb on - strand at 561.723 kb on - strand at 561.789 kb on + strand at 561.789 kb on + strand at 561.789 kb on + strand at 561.790 kb on - strand at 561.790 kb on - strand at 561.790 kb on - strand at 561.903 kb on + strand at 561.916 kb on + strand at 561.935 kb on - strand at 561.969 kb on - strand at 562.038 kb on - strand at 562.038 kb on - strand at 562.112 kb on + strand at 562.113 kb on - strand at 562.119 kb on + strand at 562.120 kb on - strand at 562.185 kb on + strand at 562.185 kb on + strand at 562.197 kb on - strand at 562.249 kb on - strand at 562.258 kb on + strand at 562.258 kb on + strand at 562.259 kb on - strand at 562.284 kb on - strand at 562.301 kb on - strand at 562.301 kb on - strand at 562.322 kb on - strand at 562.329 kb on + strand at 562.462 kb on - strand at 562.462 kb on - strand at 562.462 kb on - strand at 562.484 kb on + strand at 562.484 kb on + strand at 562.553 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 remove 557,576 + -1.6 557,689 + HMPREF1078_RS06070 0.18 -1.4 557,795 - HMPREF1078_RS06070 0.30 -0.4 557,809 + HMPREF1078_RS06070 0.32 +0.3 557,809 + HMPREF1078_RS06070 0.32 +0.8 557,854 + HMPREF1078_RS06070 0.37 +1.3 557,876 - HMPREF1078_RS06070 0.40 -0.8 557,900 - HMPREF1078_RS06070 0.42 +2.1 557,903 - HMPREF1078_RS06070 0.43 +0.9 557,903 - HMPREF1078_RS06070 0.43 +0.7 557,918 - HMPREF1078_RS06070 0.44 -1.4 557,926 + HMPREF1078_RS06070 0.45 +0.9 557,927 - HMPREF1078_RS06070 0.45 -0.2 557,957 + HMPREF1078_RS06070 0.49 +1.3 557,957 + HMPREF1078_RS06070 0.49 +0.4 557,958 - HMPREF1078_RS06070 0.49 +1.4 557,958 - HMPREF1078_RS06070 0.49 -0.3 557,958 - HMPREF1078_RS06070 0.49 +1.6 557,988 - HMPREF1078_RS06070 0.52 +0.1 558,143 + HMPREF1078_RS06070 0.70 +0.4 558,143 + HMPREF1078_RS06070 0.70 -0.1 558,144 - HMPREF1078_RS06070 0.70 +0.0 558,195 - HMPREF1078_RS06070 0.76 +0.5 558,238 + HMPREF1078_RS06070 0.81 +0.4 558,417 + -5.2 558,418 - -0.6 558,418 - -0.6 558,462 - -1.8 558,497 + -0.6 558,506 + -0.5 558,531 + -0.1 558,609 - +0.5 558,611 + +1.2 558,612 - +1.4 558,612 - +0.6 558,612 - -2.8 558,807 + +0.8 558,958 - HMPREF1078_RS06075 0.12 +2.4 558,963 - HMPREF1078_RS06075 0.12 +0.3 559,092 + HMPREF1078_RS06075 0.16 -2.0 559,094 + HMPREF1078_RS06075 0.16 +1.1 559,111 + HMPREF1078_RS06075 0.17 +0.4 559,145 - HMPREF1078_RS06075 0.18 +0.5 559,201 - HMPREF1078_RS06075 0.19 -2.5 559,265 - HMPREF1078_RS06075 0.21 +0.0 559,411 + HMPREF1078_RS06075 0.26 +0.1 559,436 + HMPREF1078_RS06075 0.26 -1.0 559,577 + HMPREF1078_RS06075 0.30 +0.7 559,613 + HMPREF1078_RS06075 0.32 -0.5 559,614 - HMPREF1078_RS06075 0.32 -1.5 559,691 + HMPREF1078_RS06075 0.34 +1.4 559,691 + HMPREF1078_RS06075 0.34 +0.6 559,691 + HMPREF1078_RS06075 0.34 +0.8 559,691 + HMPREF1078_RS06075 0.34 -0.3 559,694 - HMPREF1078_RS06075 0.34 -4.3 559,713 - HMPREF1078_RS06075 0.34 +1.6 559,842 + HMPREF1078_RS06075 0.38 +0.8 559,844 + HMPREF1078_RS06075 0.38 +1.5 559,844 + HMPREF1078_RS06075 0.38 -1.1 559,845 - HMPREF1078_RS06075 0.38 -1.9 559,848 + HMPREF1078_RS06075 0.38 -1.1 559,849 - HMPREF1078_RS06075 0.38 -0.4 559,849 - HMPREF1078_RS06075 0.38 +1.0 559,849 - HMPREF1078_RS06075 0.38 +0.9 559,860 + HMPREF1078_RS06075 0.39 -1.2 559,925 + HMPREF1078_RS06075 0.41 +0.7 559,953 - HMPREF1078_RS06075 0.42 -3.4 559,986 + HMPREF1078_RS06075 0.42 +0.5 559,987 - HMPREF1078_RS06075 0.43 -0.1 559,987 - HMPREF1078_RS06075 0.43 -2.5 559,988 + HMPREF1078_RS06075 0.43 +4.2 560,057 + HMPREF1078_RS06075 0.45 -0.1 560,134 - HMPREF1078_RS06075 0.47 -0.2 560,141 + HMPREF1078_RS06075 0.47 +0.2 560,225 + HMPREF1078_RS06075 0.50 -2.6 560,226 - HMPREF1078_RS06075 0.50 -2.0 560,235 - HMPREF1078_RS06075 0.50 -0.2 560,530 + HMPREF1078_RS06075 0.58 -1.7 560,611 - HMPREF1078_RS06075 0.61 +0.6 560,611 - HMPREF1078_RS06075 0.61 -0.2 560,614 + HMPREF1078_RS06075 0.61 +0.9 560,782 - HMPREF1078_RS06075 0.66 +2.6 560,798 + HMPREF1078_RS06075 0.66 +1.9 560,866 + HMPREF1078_RS06075 0.68 +2.3 560,903 - HMPREF1078_RS06075 0.69 +2.7 561,263 + HMPREF1078_RS06075 0.80 +2.1 561,326 + HMPREF1078_RS06075 0.82 +3.1 561,357 + HMPREF1078_RS06075 0.83 -0.5 561,359 + HMPREF1078_RS06075 0.83 -0.5 561,360 - HMPREF1078_RS06075 0.83 +0.8 561,362 - HMPREF1078_RS06075 0.83 +2.9 561,414 + HMPREF1078_RS06075 0.84 -0.4 561,414 + HMPREF1078_RS06075 0.84 +1.1 561,579 - HMPREF1078_RS06075 0.89 +1.1 561,579 - HMPREF1078_RS06075 0.89 +0.4 561,700 + -2.5 561,700 + +0.9 561,701 - +2.3 561,703 - -0.2 561,723 - -2.3 561,789 + +1.1 561,789 + +0.0 561,789 + -0.2 561,790 - +0.2 561,790 - +1.5 561,790 - +1.3 561,903 + -0.5 561,916 + -1.2 561,935 - +2.6 561,969 - -0.2 562,038 - +0.3 562,038 - +1.5 562,112 + -3.4 562,113 - -1.2 562,119 + +1.4 562,120 - +2.1 562,185 + +0.8 562,185 + -1.0 562,197 - -2.4 562,249 - +1.3 562,258 + -2.8 562,258 + -0.8 562,259 - +1.4 562,284 - +1.3 562,301 - +0.9 562,301 - +0.3 562,322 - -1.9 562,329 + +2.0 562,462 - -0.9 562,462 - +0.1 562,462 - +2.2 562,484 + -1.3 562,484 + +0.3 562,553 + +1.3
Or see this region's nucleotide sequence