Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS06045

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS06040 and HMPREF1078_RS06045 are separated by 175 nucleotidesHMPREF1078_RS06045 and HMPREF1078_RS06050 are separated by 30 nucleotides HMPREF1078_RS06040: HMPREF1078_RS06040 - C1 family peptidase, at 548,763 to 549,932 _RS06040 HMPREF1078_RS06045: HMPREF1078_RS06045 - glycoside hydrolase family 2 TIM barrel-domain containing protein, at 550,108 to 553,107 _RS06045 HMPREF1078_RS06050: HMPREF1078_RS06050 - sodium/sugar symporter, at 553,138 to 554,691 _RS06050 Position (kb) 550 551 552 553 554Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 549.236 kb on + strand, within HMPREF1078_RS06040at 549.237 kb on - strand, within HMPREF1078_RS06040at 549.252 kb on + strand, within HMPREF1078_RS06040at 549.252 kb on + strand, within HMPREF1078_RS06040at 549.253 kb on - strand, within HMPREF1078_RS06040at 549.297 kb on + strand, within HMPREF1078_RS06040at 549.300 kb on - strand, within HMPREF1078_RS06040at 549.336 kb on - strand, within HMPREF1078_RS06040at 549.345 kb on + strand, within HMPREF1078_RS06040at 549.378 kb on + strand, within HMPREF1078_RS06040at 549.432 kb on + strand, within HMPREF1078_RS06040at 549.471 kb on + strand, within HMPREF1078_RS06040at 549.491 kb on + strand, within HMPREF1078_RS06040at 549.491 kb on + strand, within HMPREF1078_RS06040at 549.634 kb on + strand, within HMPREF1078_RS06040at 549.635 kb on - strand, within HMPREF1078_RS06040at 549.781 kb on - strand, within HMPREF1078_RS06040at 549.873 kb on + strandat 549.873 kb on + strandat 549.930 kb on + strandat 550.004 kb on - strandat 550.017 kb on + strandat 550.017 kb on + strandat 550.018 kb on - strandat 550.018 kb on - strandat 550.088 kb on - strandat 550.098 kb on - strandat 550.208 kb on + strandat 550.208 kb on + strandat 550.278 kb on + strandat 550.313 kb on + strandat 550.336 kb on - strandat 550.336 kb on - strandat 550.336 kb on - strandat 550.522 kb on - strand, within HMPREF1078_RS06045at 550.545 kb on - strand, within HMPREF1078_RS06045at 550.619 kb on + strand, within HMPREF1078_RS06045at 550.619 kb on + strand, within HMPREF1078_RS06045at 550.727 kb on + strand, within HMPREF1078_RS06045at 550.785 kb on + strand, within HMPREF1078_RS06045at 551.064 kb on + strand, within HMPREF1078_RS06045at 551.191 kb on + strand, within HMPREF1078_RS06045at 551.232 kb on - strand, within HMPREF1078_RS06045at 551.232 kb on - strand, within HMPREF1078_RS06045at 551.393 kb on + strand, within HMPREF1078_RS06045at 551.464 kb on - strand, within HMPREF1078_RS06045at 551.464 kb on - strand, within HMPREF1078_RS06045at 551.480 kb on + strand, within HMPREF1078_RS06045at 551.481 kb on - strand, within HMPREF1078_RS06045at 551.481 kb on - strand, within HMPREF1078_RS06045at 551.590 kb on - strand, within HMPREF1078_RS06045at 551.727 kb on - strand, within HMPREF1078_RS06045at 551.727 kb on - strand, within HMPREF1078_RS06045at 551.760 kb on - strand, within HMPREF1078_RS06045at 551.767 kb on + strand, within HMPREF1078_RS06045at 551.960 kb on + strand, within HMPREF1078_RS06045at 551.975 kb on + strand, within HMPREF1078_RS06045at 552.014 kb on + strand, within HMPREF1078_RS06045at 552.309 kb on - strand, within HMPREF1078_RS06045at 552.439 kb on - strand, within HMPREF1078_RS06045at 552.531 kb on - strand, within HMPREF1078_RS06045at 552.540 kb on - strand, within HMPREF1078_RS06045at 552.571 kb on + strand, within HMPREF1078_RS06045at 552.572 kb on - strand, within HMPREF1078_RS06045at 552.621 kb on - strand, within HMPREF1078_RS06045at 552.883 kb on - strandat 552.904 kb on + strandat 552.905 kb on - strandat 553.096 kb on + strandat 553.109 kb on + strandat 553.123 kb on + strandat 553.163 kb on - strandat 553.163 kb on - strandat 553.166 kb on - strandat 553.178 kb on - strandat 553.240 kb on - strandat 553.482 kb on + strand, within HMPREF1078_RS06050at 553.483 kb on - strand, within HMPREF1078_RS06050at 553.483 kb on - strand, within HMPREF1078_RS06050at 553.616 kb on + strand, within HMPREF1078_RS06050at 553.644 kb on + strand, within HMPREF1078_RS06050at 553.645 kb on - strand, within HMPREF1078_RS06050at 553.906 kb on - strand, within HMPREF1078_RS06050at 553.906 kb on - strand, within HMPREF1078_RS06050at 553.906 kb on - strand, within HMPREF1078_RS06050at 553.907 kb on + strand, within HMPREF1078_RS06050at 553.907 kb on + strand, within HMPREF1078_RS06050at 553.908 kb on - strand, within HMPREF1078_RS06050at 553.983 kb on + strand, within HMPREF1078_RS06050at 553.984 kb on - strand, within HMPREF1078_RS06050at 554.022 kb on + strand, within HMPREF1078_RS06050at 554.061 kb on - strand, within HMPREF1078_RS06050at 554.099 kb on + strand, within HMPREF1078_RS06050at 554.099 kb on + strand, within HMPREF1078_RS06050

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3
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549,236 + HMPREF1078_RS06040 0.40 +3.0
549,237 - HMPREF1078_RS06040 0.41 -0.6
549,252 + HMPREF1078_RS06040 0.42 +1.2
549,252 + HMPREF1078_RS06040 0.42 -2.7
549,253 - HMPREF1078_RS06040 0.42 -0.1
549,297 + HMPREF1078_RS06040 0.46 -1.8
549,300 - HMPREF1078_RS06040 0.46 -0.3
549,336 - HMPREF1078_RS06040 0.49 -1.3
549,345 + HMPREF1078_RS06040 0.50 -0.1
549,378 + HMPREF1078_RS06040 0.53 +0.1
549,432 + HMPREF1078_RS06040 0.57 +2.4
549,471 + HMPREF1078_RS06040 0.61 +1.8
549,491 + HMPREF1078_RS06040 0.62 +0.0
549,491 + HMPREF1078_RS06040 0.62 -0.2
549,634 + HMPREF1078_RS06040 0.74 -0.6
549,635 - HMPREF1078_RS06040 0.75 -1.7
549,781 - HMPREF1078_RS06040 0.87 -4.5
549,873 + -0.4
549,873 + -3.0
549,930 + +1.3
550,004 - -2.4
550,017 + +1.4
550,017 + -3.4
550,018 - -0.1
550,018 - +0.2
550,088 - -0.0
550,098 - -4.1
550,208 + +1.3
550,208 + +0.3
550,278 + +1.2
550,313 + -0.2
550,336 - +1.4
550,336 - +2.7
550,336 - -0.1
550,522 - HMPREF1078_RS06045 0.14 -2.4
550,545 - HMPREF1078_RS06045 0.15 +1.0
550,619 + HMPREF1078_RS06045 0.17 -0.3
550,619 + HMPREF1078_RS06045 0.17 +0.4
550,727 + HMPREF1078_RS06045 0.21 -2.1
550,785 + HMPREF1078_RS06045 0.23 +1.1
551,064 + HMPREF1078_RS06045 0.32 +0.9
551,191 + HMPREF1078_RS06045 0.36 -0.7
551,232 - HMPREF1078_RS06045 0.37 -1.3
551,232 - HMPREF1078_RS06045 0.37 -0.2
551,393 + HMPREF1078_RS06045 0.43 +1.3
551,464 - HMPREF1078_RS06045 0.45 +3.3
551,464 - HMPREF1078_RS06045 0.45 +1.4
551,480 + HMPREF1078_RS06045 0.46 -3.2
551,481 - HMPREF1078_RS06045 0.46 +1.1
551,481 - HMPREF1078_RS06045 0.46 +2.5
551,590 - HMPREF1078_RS06045 0.49 -1.3
551,727 - HMPREF1078_RS06045 0.54 +0.2
551,727 - HMPREF1078_RS06045 0.54 +2.7
551,760 - HMPREF1078_RS06045 0.55 +1.8
551,767 + HMPREF1078_RS06045 0.55 -2.5
551,960 + HMPREF1078_RS06045 0.62 -2.3
551,975 + HMPREF1078_RS06045 0.62 -0.4
552,014 + HMPREF1078_RS06045 0.64 -3.0
552,309 - HMPREF1078_RS06045 0.73 +1.3
552,439 - HMPREF1078_RS06045 0.78 +1.6
552,531 - HMPREF1078_RS06045 0.81 -2.6
552,540 - HMPREF1078_RS06045 0.81 -1.5
552,571 + HMPREF1078_RS06045 0.82 +1.6
552,572 - HMPREF1078_RS06045 0.82 +2.0
552,621 - HMPREF1078_RS06045 0.84 -0.7
552,883 - -5.2
552,904 + +0.4
552,905 - -1.7
553,096 + -0.6
553,109 + -2.6
553,123 + -0.3
553,163 - -0.6
553,163 - +0.0
553,166 - -2.6
553,178 - -0.6
553,240 - -0.5
553,482 + HMPREF1078_RS06050 0.22 -0.0
553,483 - HMPREF1078_RS06050 0.22 -3.0
553,483 - HMPREF1078_RS06050 0.22 -2.2
553,616 + HMPREF1078_RS06050 0.31 +0.4
553,644 + HMPREF1078_RS06050 0.33 -1.5
553,645 - HMPREF1078_RS06050 0.33 -1.4
553,906 - HMPREF1078_RS06050 0.49 -0.6
553,906 - HMPREF1078_RS06050 0.49 +0.2
553,906 - HMPREF1078_RS06050 0.49 -1.3
553,907 + HMPREF1078_RS06050 0.49 -3.2
553,907 + HMPREF1078_RS06050 0.49 -1.9
553,908 - HMPREF1078_RS06050 0.50 -1.5
553,983 + HMPREF1078_RS06050 0.54 +0.9
553,984 - HMPREF1078_RS06050 0.54 -2.9
554,022 + HMPREF1078_RS06050 0.57 +2.0
554,061 - HMPREF1078_RS06050 0.59 -0.1
554,099 + HMPREF1078_RS06050 0.62 -0.3
554,099 + HMPREF1078_RS06050 0.62 -2.2

Or see this region's nucleotide sequence