Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS05855 and HMPREF1078_RS05860 are separated by 39 nucleotides HMPREF1078_RS05860 and HMPREF1078_RS05865 are separated by 482 nucleotides HMPREF1078_RS05865 and HMPREF1078_RS05870 are separated by 158 nucleotides
HMPREF1078_RS05855: HMPREF1078_RS05855 - tetratricopeptide repeat protein, at 498,423 to 500,189
_RS05855
HMPREF1078_RS05860: HMPREF1078_RS05860 - dUTP diphosphatase, at 500,229 to 500,660
_RS05860
HMPREF1078_RS05865: HMPREF1078_RS05865 - glycoside hydrolase family 2 TIM barrel-domain containing protein, at 501,143 to 503,644
_RS05865
HMPREF1078_RS05870: HMPREF1078_RS05870 - PglZ domain-containing protein, at 503,803 to 505,353
_RS05870
Position (kb) 501
502
503
504 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 500.185 kb on - strand at 500.691 kb on - strand at 500.705 kb on - strand at 500.747 kb on + strand at 500.753 kb on + strand at 500.755 kb on + strand at 500.756 kb on - strand at 500.884 kb on - strand at 500.952 kb on - strand at 500.959 kb on + strand at 500.959 kb on + strand at 500.960 kb on - strand at 500.964 kb on + strand at 500.970 kb on + strand at 500.971 kb on - strand at 500.971 kb on - strand at 500.971 kb on - strand at 500.971 kb on - strand at 500.971 kb on - strand at 500.989 kb on + strand at 501.013 kb on - strand at 501.016 kb on + strand at 501.016 kb on + strand at 501.016 kb on + strand at 501.016 kb on + strand at 501.016 kb on + strand at 501.016 kb on + strand at 501.016 kb on + strand at 501.016 kb on + strand at 501.016 kb on + strand at 501.017 kb on - strand at 501.017 kb on - strand at 501.017 kb on - strand at 501.017 kb on - strand at 501.017 kb on - strand at 501.017 kb on - strand at 501.017 kb on - strand at 501.017 kb on - strand at 501.017 kb on - strand at 501.017 kb on - strand at 501.017 kb on - strand at 501.017 kb on - strand at 501.024 kb on - strand at 501.032 kb on - strand at 501.041 kb on - strand at 501.041 kb on - strand at 501.145 kb on - strand at 501.152 kb on + strand at 501.193 kb on + strand at 501.194 kb on - strand at 501.233 kb on + strand at 501.346 kb on + strand at 501.398 kb on + strand, within HMPREF1078_RS05865 at 501.457 kb on - strand, within HMPREF1078_RS05865 at 501.657 kb on + strand, within HMPREF1078_RS05865 at 501.657 kb on + strand, within HMPREF1078_RS05865 at 501.660 kb on + strand, within HMPREF1078_RS05865 at 501.751 kb on + strand, within HMPREF1078_RS05865 at 501.751 kb on + strand, within HMPREF1078_RS05865 at 501.751 kb on + strand, within HMPREF1078_RS05865 at 501.751 kb on + strand, within HMPREF1078_RS05865 at 501.751 kb on + strand, within HMPREF1078_RS05865 at 501.752 kb on - strand, within HMPREF1078_RS05865 at 501.752 kb on - strand, within HMPREF1078_RS05865 at 501.752 kb on - strand, within HMPREF1078_RS05865 at 501.752 kb on - strand, within HMPREF1078_RS05865 at 501.754 kb on - strand, within HMPREF1078_RS05865 at 501.754 kb on - strand, within HMPREF1078_RS05865 at 501.823 kb on - strand, within HMPREF1078_RS05865 at 501.868 kb on + strand, within HMPREF1078_RS05865 at 501.869 kb on - strand, within HMPREF1078_RS05865 at 501.869 kb on - strand, within HMPREF1078_RS05865 at 501.880 kb on - strand, within HMPREF1078_RS05865 at 501.932 kb on + strand, within HMPREF1078_RS05865 at 501.933 kb on - strand, within HMPREF1078_RS05865 at 502.009 kb on - strand, within HMPREF1078_RS05865 at 502.143 kb on - strand, within HMPREF1078_RS05865 at 502.351 kb on - strand, within HMPREF1078_RS05865 at 502.519 kb on + strand, within HMPREF1078_RS05865 at 502.519 kb on + strand, within HMPREF1078_RS05865 at 502.807 kb on + strand, within HMPREF1078_RS05865 at 502.839 kb on + strand, within HMPREF1078_RS05865 at 502.865 kb on + strand, within HMPREF1078_RS05865 at 502.866 kb on - strand, within HMPREF1078_RS05865 at 502.965 kb on + strand, within HMPREF1078_RS05865 at 503.042 kb on - strand, within HMPREF1078_RS05865 at 503.124 kb on - strand, within HMPREF1078_RS05865 at 503.226 kb on + strand, within HMPREF1078_RS05865 at 503.227 kb on - strand, within HMPREF1078_RS05865 at 503.257 kb on - strand, within HMPREF1078_RS05865 at 503.302 kb on + strand, within HMPREF1078_RS05865 at 503.302 kb on + strand, within HMPREF1078_RS05865 at 503.303 kb on - strand, within HMPREF1078_RS05865 at 503.335 kb on - strand, within HMPREF1078_RS05865 at 503.568 kb on - strand at 503.631 kb on - strand at 503.644 kb on + strand at 503.644 kb on + strand at 503.644 kb on + strand at 503.644 kb on + strand at 503.644 kb on + strand at 503.645 kb on - strand at 503.650 kb on + strand at 503.651 kb on - strand at 503.651 kb on - strand at 503.651 kb on - strand at 503.651 kb on - strand at 503.666 kb on - strand at 503.667 kb on + strand at 503.673 kb on - strand at 503.684 kb on - strand at 503.730 kb on + strand at 503.731 kb on - strand at 503.796 kb on + strand at 503.802 kb on + strand at 503.802 kb on + strand at 503.938 kb on - strand at 504.150 kb on + strand, within HMPREF1078_RS05870 at 504.176 kb on + strand, within HMPREF1078_RS05870 at 504.176 kb on + strand, within HMPREF1078_RS05870 at 504.177 kb on - strand, within HMPREF1078_RS05870 at 504.177 kb on - strand, within HMPREF1078_RS05870 at 504.182 kb on + strand, within HMPREF1078_RS05870 at 504.293 kb on - strand, within HMPREF1078_RS05870 at 504.494 kb on + strand, within HMPREF1078_RS05870 at 504.494 kb on + strand, within HMPREF1078_RS05870 at 504.495 kb on - strand, within HMPREF1078_RS05870 at 504.562 kb on + strand, within HMPREF1078_RS05870 at 504.563 kb on - strand, within HMPREF1078_RS05870 at 504.566 kb on - strand, within HMPREF1078_RS05870 at 504.616 kb on + strand, within HMPREF1078_RS05870
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 remove 500,185 - -3.8 500,691 - +1.2 500,705 - -3.1 500,747 + -1.1 500,753 + -1.6 500,755 + -2.4 500,756 - -2.2 500,884 - -2.7 500,952 - +0.5 500,959 + +1.6 500,959 + +0.3 500,960 - -1.0 500,964 + -1.2 500,970 + +0.2 500,971 - -1.4 500,971 - +0.7 500,971 - -1.6 500,971 - -0.4 500,971 - -1.6 500,989 + -0.5 501,013 - -1.3 501,016 + +1.1 501,016 + -3.1 501,016 + +2.3 501,016 + +2.3 501,016 + -2.4 501,016 + +1.0 501,016 + -3.7 501,016 + +0.8 501,016 + -0.4 501,017 - +0.2 501,017 - +0.2 501,017 - +0.6 501,017 - +0.3 501,017 - +0.0 501,017 - -0.6 501,017 - -3.8 501,017 - -1.1 501,017 - -1.3 501,017 - +0.1 501,017 - -0.7 501,017 - -0.2 501,024 - +1.7 501,032 - +0.7 501,041 - +1.2 501,041 - -1.5 501,145 - -1.0 501,152 + -4.3 501,193 + +0.2 501,194 - +1.6 501,233 + -1.9 501,346 + -0.5 501,398 + HMPREF1078_RS05865 0.10 +0.0 501,457 - HMPREF1078_RS05865 0.13 +0.9 501,657 + HMPREF1078_RS05865 0.21 +1.4 501,657 + HMPREF1078_RS05865 0.21 +2.1 501,660 + HMPREF1078_RS05865 0.21 +1.0 501,751 + HMPREF1078_RS05865 0.24 -2.4 501,751 + HMPREF1078_RS05865 0.24 +2.5 501,751 + HMPREF1078_RS05865 0.24 -1.2 501,751 + HMPREF1078_RS05865 0.24 +0.5 501,751 + HMPREF1078_RS05865 0.24 -0.8 501,752 - HMPREF1078_RS05865 0.24 +1.0 501,752 - HMPREF1078_RS05865 0.24 +0.1 501,752 - HMPREF1078_RS05865 0.24 +0.5 501,752 - HMPREF1078_RS05865 0.24 -0.2 501,754 - HMPREF1078_RS05865 0.24 -2.1 501,754 - HMPREF1078_RS05865 0.24 +0.7 501,823 - HMPREF1078_RS05865 0.27 +0.3 501,868 + HMPREF1078_RS05865 0.29 -0.8 501,869 - HMPREF1078_RS05865 0.29 +0.2 501,869 - HMPREF1078_RS05865 0.29 +0.1 501,880 - HMPREF1078_RS05865 0.29 +0.7 501,932 + HMPREF1078_RS05865 0.32 -1.0 501,933 - HMPREF1078_RS05865 0.32 +0.2 502,009 - HMPREF1078_RS05865 0.35 -1.4 502,143 - HMPREF1078_RS05865 0.40 -2.0 502,351 - HMPREF1078_RS05865 0.48 +0.2 502,519 + HMPREF1078_RS05865 0.55 -0.1 502,519 + HMPREF1078_RS05865 0.55 +0.0 502,807 + HMPREF1078_RS05865 0.67 -0.5 502,839 + HMPREF1078_RS05865 0.68 -0.5 502,865 + HMPREF1078_RS05865 0.69 -2.1 502,866 - HMPREF1078_RS05865 0.69 -0.5 502,965 + HMPREF1078_RS05865 0.73 -1.0 503,042 - HMPREF1078_RS05865 0.76 +1.3 503,124 - HMPREF1078_RS05865 0.79 -1.9 503,226 + HMPREF1078_RS05865 0.83 +0.7 503,227 - HMPREF1078_RS05865 0.83 -1.3 503,257 - HMPREF1078_RS05865 0.84 +0.2 503,302 + HMPREF1078_RS05865 0.86 -1.1 503,302 + HMPREF1078_RS05865 0.86 -2.3 503,303 - HMPREF1078_RS05865 0.86 +0.5 503,335 - HMPREF1078_RS05865 0.88 -1.7 503,568 - -2.6 503,631 - -2.1 503,644 + -1.2 503,644 + -1.1 503,644 + +4.4 503,644 + +0.0 503,644 + +1.5 503,645 - +0.7 503,650 + +0.8 503,651 - -0.2 503,651 - +1.2 503,651 - -1.5 503,651 - +2.0 503,666 - -0.3 503,667 + +2.1 503,673 - +0.5 503,684 - -1.1 503,730 + -3.5 503,731 - -4.2 503,796 + -0.3 503,802 + +2.2 503,802 + -3.7 503,938 - -3.1 504,150 + HMPREF1078_RS05870 0.22 -2.6 504,176 + HMPREF1078_RS05870 0.24 -2.8 504,176 + HMPREF1078_RS05870 0.24 -0.8 504,177 - HMPREF1078_RS05870 0.24 -3.2 504,177 - HMPREF1078_RS05870 0.24 -4.1 504,182 + HMPREF1078_RS05870 0.24 -0.8 504,293 - HMPREF1078_RS05870 0.32 -3.1 504,494 + HMPREF1078_RS05870 0.45 -3.6 504,494 + HMPREF1078_RS05870 0.45 -1.1 504,495 - HMPREF1078_RS05870 0.45 -1.6 504,562 + HMPREF1078_RS05870 0.49 -2.2 504,563 - HMPREF1078_RS05870 0.49 -0.8 504,566 - HMPREF1078_RS05870 0.49 -2.4 504,616 + HMPREF1078_RS05870 0.52 -4.6
Or see this region's nucleotide sequence