Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS04920 and HMPREF1078_RS04925 are separated by 190 nucleotides HMPREF1078_RS04925 and HMPREF1078_RS04930 are separated by 85 nucleotides HMPREF1078_RS04930 and HMPREF1078_RS04935 are separated by 154 nucleotides HMPREF1078_RS04935 and HMPREF1078_RS04940 are separated by 4 nucleotides
HMPREF1078_RS04920: HMPREF1078_RS04920 - LrgB family protein, at 240,150 to 240,848
_RS04920
HMPREF1078_RS04925: HMPREF1078_RS04925 - elongation factor P, at 241,039 to 241,602
_RS04925
HMPREF1078_RS04930: HMPREF1078_RS04930 - DNA repair protein RadC, at 241,688 to 242,368
_RS04930
HMPREF1078_RS04935: HMPREF1078_RS04935 - iron-sulfur cluster assembly protein, at 242,523 to 242,840
_RS04935
HMPREF1078_RS04940: HMPREF1078_RS04940 - UDP-2,3-diacylglucosamine diphosphatase, at 242,845 to 243,621
_RS04940
Position (kb) 241
242
243 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 240.725 kb on + strand, within HMPREF1078_RS04920 at 240.831 kb on - strand at 240.833 kb on + strand at 240.881 kb on + strand at 240.882 kb on - strand at 240.893 kb on - strand at 240.927 kb on + strand at 240.927 kb on + strand at 240.938 kb on - strand at 240.953 kb on + strand at 240.953 kb on + strand at 240.954 kb on - strand at 241.012 kb on + strand at 241.018 kb on + strand at 241.018 kb on + strand at 241.019 kb on - strand at 241.020 kb on + strand at 241.020 kb on + strand at 241.020 kb on + strand at 241.020 kb on + strand at 241.021 kb on - strand at 241.021 kb on - strand at 241.023 kb on + strand at 241.024 kb on - strand at 241.024 kb on - strand at 241.026 kb on - strand at 241.035 kb on + strand at 241.038 kb on + strand at 241.039 kb on - strand at 241.044 kb on + strand at 241.045 kb on - strand at 241.074 kb on + strand at 241.075 kb on - strand at 241.075 kb on - strand at 241.089 kb on + strand at 241.090 kb on - strand at 241.096 kb on + strand, within HMPREF1078_RS04925 at 241.096 kb on + strand, within HMPREF1078_RS04925 at 241.121 kb on + strand, within HMPREF1078_RS04925 at 241.152 kb on + strand, within HMPREF1078_RS04925 at 241.153 kb on - strand, within HMPREF1078_RS04925 at 241.153 kb on - strand, within HMPREF1078_RS04925 at 241.173 kb on - strand, within HMPREF1078_RS04925 at 241.226 kb on + strand, within HMPREF1078_RS04925 at 241.226 kb on + strand, within HMPREF1078_RS04925 at 241.232 kb on + strand, within HMPREF1078_RS04925 at 241.246 kb on + strand, within HMPREF1078_RS04925 at 241.252 kb on + strand, within HMPREF1078_RS04925 at 241.254 kb on + strand, within HMPREF1078_RS04925 at 241.254 kb on + strand, within HMPREF1078_RS04925 at 241.254 kb on + strand, within HMPREF1078_RS04925 at 241.254 kb on + strand, within HMPREF1078_RS04925 at 241.254 kb on + strand, within HMPREF1078_RS04925 at 241.254 kb on + strand, within HMPREF1078_RS04925 at 241.254 kb on + strand, within HMPREF1078_RS04925 at 241.254 kb on + strand, within HMPREF1078_RS04925 at 241.254 kb on + strand, within HMPREF1078_RS04925 at 241.254 kb on + strand, within HMPREF1078_RS04925 at 241.255 kb on - strand, within HMPREF1078_RS04925 at 241.255 kb on - strand, within HMPREF1078_RS04925 at 241.255 kb on - strand, within HMPREF1078_RS04925 at 241.255 kb on - strand, within HMPREF1078_RS04925 at 241.255 kb on - strand, within HMPREF1078_RS04925 at 241.255 kb on - strand, within HMPREF1078_RS04925 at 241.255 kb on - strand, within HMPREF1078_RS04925 at 241.255 kb on - strand, within HMPREF1078_RS04925 at 241.258 kb on + strand, within HMPREF1078_RS04925 at 241.259 kb on - strand, within HMPREF1078_RS04925 at 241.276 kb on + strand, within HMPREF1078_RS04925 at 241.308 kb on + strand, within HMPREF1078_RS04925 at 241.413 kb on + strand, within HMPREF1078_RS04925 at 241.413 kb on + strand, within HMPREF1078_RS04925 at 241.413 kb on + strand, within HMPREF1078_RS04925 at 241.413 kb on + strand, within HMPREF1078_RS04925 at 241.422 kb on - strand, within HMPREF1078_RS04925 at 241.444 kb on + strand, within HMPREF1078_RS04925 at 241.447 kb on - strand, within HMPREF1078_RS04925 at 241.470 kb on + strand, within HMPREF1078_RS04925 at 241.471 kb on - strand, within HMPREF1078_RS04925 at 241.471 kb on - strand, within HMPREF1078_RS04925 at 241.503 kb on - strand, within HMPREF1078_RS04925 at 241.520 kb on + strand, within HMPREF1078_RS04925 at 241.566 kb on + strand at 241.566 kb on + strand at 241.582 kb on + strand at 241.583 kb on - strand at 241.583 kb on - strand at 241.586 kb on + strand at 241.587 kb on - strand at 241.594 kb on - strand at 241.605 kb on + strand at 241.606 kb on - strand at 241.607 kb on + strand at 241.608 kb on - strand at 241.614 kb on + strand at 241.614 kb on + strand at 241.615 kb on - strand at 241.615 kb on - strand at 241.615 kb on - strand at 241.621 kb on + strand at 241.622 kb on - strand at 241.628 kb on + strand at 241.631 kb on - strand at 241.643 kb on + strand at 241.643 kb on + strand at 241.644 kb on - strand at 241.644 kb on - strand at 241.651 kb on - strand at 241.657 kb on + strand at 241.657 kb on + strand at 241.658 kb on - strand at 241.688 kb on - strand at 241.688 kb on - strand at 241.695 kb on + strand at 241.737 kb on + strand at 241.747 kb on + strand at 241.748 kb on - strand at 241.748 kb on - strand at 241.774 kb on - strand, within HMPREF1078_RS04930 at 241.852 kb on + strand, within HMPREF1078_RS04930 at 241.852 kb on + strand, within HMPREF1078_RS04930 at 241.855 kb on + strand, within HMPREF1078_RS04930 at 241.900 kb on + strand, within HMPREF1078_RS04930 at 241.930 kb on + strand, within HMPREF1078_RS04930 at 241.931 kb on - strand, within HMPREF1078_RS04930 at 241.931 kb on - strand, within HMPREF1078_RS04930 at 241.931 kb on - strand, within HMPREF1078_RS04930 at 242.212 kb on + strand, within HMPREF1078_RS04930 at 242.299 kb on - strand, within HMPREF1078_RS04930 at 242.299 kb on - strand, within HMPREF1078_RS04930 at 242.307 kb on + strand at 242.314 kb on + strand at 242.315 kb on - strand at 242.315 kb on - strand at 242.315 kb on - strand at 242.337 kb on - strand at 242.337 kb on - strand at 242.337 kb on - strand at 242.337 kb on - strand at 242.345 kb on + strand at 242.346 kb on - strand at 242.371 kb on + strand at 242.377 kb on + strand at 242.385 kb on - strand at 242.393 kb on + strand at 242.393 kb on + strand at 242.400 kb on - strand at 242.459 kb on - strand at 242.497 kb on + strand at 242.497 kb on + strand at 242.522 kb on + strand at 242.570 kb on + strand, within HMPREF1078_RS04935 at 242.578 kb on + strand, within HMPREF1078_RS04935 at 242.625 kb on + strand, within HMPREF1078_RS04935 at 242.625 kb on + strand, within HMPREF1078_RS04935 at 242.632 kb on + strand, within HMPREF1078_RS04935 at 242.632 kb on + strand, within HMPREF1078_RS04935 at 242.632 kb on + strand, within HMPREF1078_RS04935 at 242.638 kb on + strand, within HMPREF1078_RS04935 at 242.731 kb on + strand, within HMPREF1078_RS04935
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 remove 240,725 + HMPREF1078_RS04920 0.82 +0.4 240,831 - -0.9 240,833 + -0.1 240,881 + -0.5 240,882 - +1.4 240,893 - -0.4 240,927 + -1.1 240,927 + -4.4 240,938 - +2.1 240,953 + +0.9 240,953 + -0.3 240,954 - -1.6 241,012 + +0.1 241,018 + -1.0 241,018 + -3.5 241,019 - -1.3 241,020 + -0.1 241,020 + -1.3 241,020 + +0.8 241,020 + +0.5 241,021 - -1.5 241,021 - -1.1 241,023 + -0.6 241,024 - +0.1 241,024 - -1.7 241,026 - +0.5 241,035 + -0.2 241,038 + -2.1 241,039 - -3.6 241,044 + -1.6 241,045 - -1.2 241,074 + -1.9 241,075 - -1.5 241,075 - -2.8 241,089 + -0.5 241,090 - -2.5 241,096 + HMPREF1078_RS04925 0.10 -3.1 241,096 + HMPREF1078_RS04925 0.10 -2.4 241,121 + HMPREF1078_RS04925 0.15 -1.7 241,152 + HMPREF1078_RS04925 0.20 -1.5 241,153 - HMPREF1078_RS04925 0.20 -2.3 241,153 - HMPREF1078_RS04925 0.20 -0.2 241,173 - HMPREF1078_RS04925 0.24 -0.7 241,226 + HMPREF1078_RS04925 0.33 -1.3 241,226 + HMPREF1078_RS04925 0.33 -0.9 241,232 + HMPREF1078_RS04925 0.34 -1.3 241,246 + HMPREF1078_RS04925 0.37 +0.1 241,252 + HMPREF1078_RS04925 0.38 -1.6 241,254 + HMPREF1078_RS04925 0.38 -2.0 241,254 + HMPREF1078_RS04925 0.38 -0.9 241,254 + HMPREF1078_RS04925 0.38 -1.6 241,254 + HMPREF1078_RS04925 0.38 -0.2 241,254 + HMPREF1078_RS04925 0.38 -1.6 241,254 + HMPREF1078_RS04925 0.38 -0.5 241,254 + HMPREF1078_RS04925 0.38 -0.9 241,254 + HMPREF1078_RS04925 0.38 -3.0 241,254 + HMPREF1078_RS04925 0.38 -2.9 241,254 + HMPREF1078_RS04925 0.38 -1.3 241,255 - HMPREF1078_RS04925 0.38 -0.5 241,255 - HMPREF1078_RS04925 0.38 -2.7 241,255 - HMPREF1078_RS04925 0.38 -1.1 241,255 - HMPREF1078_RS04925 0.38 -1.8 241,255 - HMPREF1078_RS04925 0.38 -0.2 241,255 - HMPREF1078_RS04925 0.38 -0.9 241,255 - HMPREF1078_RS04925 0.38 -0.9 241,255 - HMPREF1078_RS04925 0.38 -1.2 241,258 + HMPREF1078_RS04925 0.39 -1.7 241,259 - HMPREF1078_RS04925 0.39 -1.8 241,276 + HMPREF1078_RS04925 0.42 -0.2 241,308 + HMPREF1078_RS04925 0.48 -1.1 241,413 + HMPREF1078_RS04925 0.66 -0.9 241,413 + HMPREF1078_RS04925 0.66 -1.7 241,413 + HMPREF1078_RS04925 0.66 -1.9 241,413 + HMPREF1078_RS04925 0.66 -0.9 241,422 - HMPREF1078_RS04925 0.68 -1.9 241,444 + HMPREF1078_RS04925 0.72 -1.2 241,447 - HMPREF1078_RS04925 0.72 +1.1 241,470 + HMPREF1078_RS04925 0.76 -2.4 241,471 - HMPREF1078_RS04925 0.77 -0.7 241,471 - HMPREF1078_RS04925 0.77 -1.9 241,503 - HMPREF1078_RS04925 0.82 +1.1 241,520 + HMPREF1078_RS04925 0.85 -1.9 241,566 + -0.2 241,566 + -2.4 241,582 + -2.4 241,583 - -2.0 241,583 - -1.9 241,586 + -2.1 241,587 - -2.0 241,594 - -3.0 241,605 + +1.5 241,606 - +0.7 241,607 + -0.8 241,608 - +0.5 241,614 + +1.2 241,614 + -1.0 241,615 - -1.8 241,615 - +0.3 241,615 - +0.9 241,621 + -0.8 241,622 - +0.4 241,628 + +0.1 241,631 - +0.1 241,643 + +1.3 241,643 + -1.2 241,644 - +0.5 241,644 - -2.1 241,651 - -0.4 241,657 + +1.1 241,657 + +2.6 241,658 - -0.4 241,688 - +0.5 241,688 - -1.5 241,695 + +1.5 241,737 + +1.4 241,747 + +1.5 241,748 - -0.9 241,748 - +0.3 241,774 - HMPREF1078_RS04930 0.13 -1.5 241,852 + HMPREF1078_RS04930 0.24 -0.9 241,852 + HMPREF1078_RS04930 0.24 +2.4 241,855 + HMPREF1078_RS04930 0.25 +1.0 241,900 + HMPREF1078_RS04930 0.31 -0.0 241,930 + HMPREF1078_RS04930 0.36 +0.5 241,931 - HMPREF1078_RS04930 0.36 -1.3 241,931 - HMPREF1078_RS04930 0.36 +2.1 241,931 - HMPREF1078_RS04930 0.36 +0.4 242,212 + HMPREF1078_RS04930 0.77 +2.7 242,299 - HMPREF1078_RS04930 0.90 +1.0 242,299 - HMPREF1078_RS04930 0.90 +1.6 242,307 + -1.3 242,314 + +1.7 242,315 - +0.7 242,315 - +1.1 242,315 - +2.1 242,337 - +0.0 242,337 - +2.1 242,337 - -2.1 242,337 - +1.3 242,345 + -1.5 242,346 - +1.5 242,371 + +2.7 242,377 + -0.2 242,385 - +1.1 242,393 + +1.1 242,393 + +1.0 242,400 - +0.7 242,459 - -2.2 242,497 + +1.4 242,497 + +1.2 242,522 + -0.4 242,570 + HMPREF1078_RS04935 0.15 -2.1 242,578 + HMPREF1078_RS04935 0.17 +0.1 242,625 + HMPREF1078_RS04935 0.32 -0.0 242,625 + HMPREF1078_RS04935 0.32 +0.4 242,632 + HMPREF1078_RS04935 0.34 -2.2 242,632 + HMPREF1078_RS04935 0.34 -1.7 242,632 + HMPREF1078_RS04935 0.34 -0.4 242,638 + HMPREF1078_RS04935 0.36 -2.5 242,731 + HMPREF1078_RS04935 0.65 +0.1
Or see this region's nucleotide sequence