Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS04655 and HMPREF1078_RS04660 are separated by 3 nucleotides HMPREF1078_RS04660 and HMPREF1078_RS04665 are separated by 26 nucleotides HMPREF1078_RS04665 and HMPREF1078_RS04670 are separated by 415 nucleotides
HMPREF1078_RS04655: HMPREF1078_RS04655 - penicillin-binding protein, at 171,251 to 173,449
_RS04655
HMPREF1078_RS04660: HMPREF1078_RS04660 - FtsL-like putative cell division protein, at 173,453 to 173,797
_RS04660
HMPREF1078_RS04665: HMPREF1078_RS04665 - 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH, at 173,824 to 174,750
_RS04665
HMPREF1078_RS04670: HMPREF1078_RS04670 - DUF6383 domain-containing protein, at 175,166 to 178,492
_RS04670
Position (kb) 173
174
175 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 173.461 kb on - strand at 173.499 kb on - strand, within HMPREF1078_RS04660 at 173.514 kb on - strand, within HMPREF1078_RS04660 at 173.833 kb on - strand at 173.833 kb on - strand at 173.836 kb on - strand at 173.855 kb on - strand at 174.143 kb on - strand, within HMPREF1078_RS04665 at 174.191 kb on - strand, within HMPREF1078_RS04665 at 174.322 kb on - strand, within HMPREF1078_RS04665 at 174.322 kb on - strand, within HMPREF1078_RS04665 at 174.322 kb on - strand, within HMPREF1078_RS04665 at 174.322 kb on - strand, within HMPREF1078_RS04665 at 174.324 kb on - strand, within HMPREF1078_RS04665 at 174.328 kb on - strand, within HMPREF1078_RS04665 at 174.328 kb on - strand, within HMPREF1078_RS04665 at 174.328 kb on - strand, within HMPREF1078_RS04665 at 174.328 kb on - strand, within HMPREF1078_RS04665 at 174.331 kb on - strand, within HMPREF1078_RS04665 at 174.331 kb on - strand, within HMPREF1078_RS04665 at 174.376 kb on - strand, within HMPREF1078_RS04665 at 174.504 kb on - strand, within HMPREF1078_RS04665 at 174.506 kb on - strand, within HMPREF1078_RS04665 at 174.510 kb on - strand, within HMPREF1078_RS04665 at 174.666 kb on - strand at 174.666 kb on - strand at 174.760 kb on - strand at 174.797 kb on - strand at 174.797 kb on - strand at 174.797 kb on - strand at 174.816 kb on - strand at 174.816 kb on - strand at 174.816 kb on - strand at 174.842 kb on - strand at 174.853 kb on - strand at 174.872 kb on - strand at 174.872 kb on - strand at 174.968 kb on + strand at 174.968 kb on + strand at 174.986 kb on + strand at 175.049 kb on + strand at 175.049 kb on + strand at 175.049 kb on + strand at 175.049 kb on + strand at 175.050 kb on - strand at 175.050 kb on - strand at 175.050 kb on - strand at 175.050 kb on - strand at 175.050 kb on - strand at 175.050 kb on - strand at 175.050 kb on - strand at 175.050 kb on - strand at 175.050 kb on - strand at 175.050 kb on - strand at 175.051 kb on + strand at 175.051 kb on + strand at 175.051 kb on + strand at 175.051 kb on + strand at 175.051 kb on + strand at 175.051 kb on + strand at 175.052 kb on - strand at 175.052 kb on - strand at 175.052 kb on - strand at 175.052 kb on - strand at 175.054 kb on - strand at 175.054 kb on - strand at 175.054 kb on - strand at 175.094 kb on + strand at 175.095 kb on - strand at 175.152 kb on + strand at 175.152 kb on + strand at 175.172 kb on - strand at 175.172 kb on - strand at 175.208 kb on + strand at 175.211 kb on + strand at 175.211 kb on + strand at 175.211 kb on + strand at 175.217 kb on + strand at 175.240 kb on + strand at 175.259 kb on - strand at 175.259 kb on - strand at 175.259 kb on - strand at 175.283 kb on + strand at 175.283 kb on + strand at 175.283 kb on + strand at 175.325 kb on + strand at 175.326 kb on - strand at 175.359 kb on - strand at 175.359 kb on - strand at 175.372 kb on + strand at 175.373 kb on - strand at 175.373 kb on - strand at 175.376 kb on - strand at 175.412 kb on - strand at 175.454 kb on - strand at 175.469 kb on - strand at 175.475 kb on - strand at 175.490 kb on + strand at 175.540 kb on + strand, within HMPREF1078_RS04670 at 175.540 kb on + strand, within HMPREF1078_RS04670 at 175.541 kb on - strand, within HMPREF1078_RS04670 at 175.541 kb on - strand, within HMPREF1078_RS04670 at 175.555 kb on + strand, within HMPREF1078_RS04670 at 175.643 kb on + strand, within HMPREF1078_RS04670 at 175.643 kb on + strand, within HMPREF1078_RS04670 at 175.643 kb on + strand, within HMPREF1078_RS04670 at 175.643 kb on + strand, within HMPREF1078_RS04670 at 175.643 kb on + strand, within HMPREF1078_RS04670 at 175.643 kb on + strand, within HMPREF1078_RS04670 at 175.643 kb on + strand, within HMPREF1078_RS04670 at 175.644 kb on - strand, within HMPREF1078_RS04670 at 175.644 kb on - strand, within HMPREF1078_RS04670 at 175.644 kb on - strand, within HMPREF1078_RS04670 at 175.647 kb on + strand, within HMPREF1078_RS04670 at 175.647 kb on + strand, within HMPREF1078_RS04670 at 175.648 kb on - strand, within HMPREF1078_RS04670 at 175.648 kb on - strand, within HMPREF1078_RS04670 at 175.661 kb on + strand, within HMPREF1078_RS04670 at 175.661 kb on + strand, within HMPREF1078_RS04670 at 175.662 kb on - strand, within HMPREF1078_RS04670 at 175.662 kb on - strand, within HMPREF1078_RS04670 at 175.662 kb on - strand, within HMPREF1078_RS04670 at 175.662 kb on - strand, within HMPREF1078_RS04670 at 175.662 kb on - strand, within HMPREF1078_RS04670 at 175.665 kb on + strand, within HMPREF1078_RS04670 at 175.665 kb on + strand, within HMPREF1078_RS04670 at 175.666 kb on - strand, within HMPREF1078_RS04670 at 175.666 kb on - strand, within HMPREF1078_RS04670 at 175.666 kb on - strand, within HMPREF1078_RS04670 at 175.666 kb on - strand, within HMPREF1078_RS04670 at 175.672 kb on + strand, within HMPREF1078_RS04670 at 175.672 kb on + strand, within HMPREF1078_RS04670 at 175.673 kb on - strand, within HMPREF1078_RS04670 at 175.735 kb on + strand, within HMPREF1078_RS04670 at 175.736 kb on - strand, within HMPREF1078_RS04670 at 175.736 kb on - strand, within HMPREF1078_RS04670 at 175.736 kb on - strand, within HMPREF1078_RS04670 at 175.736 kb on - strand, within HMPREF1078_RS04670 at 175.737 kb on + strand, within HMPREF1078_RS04670 at 175.737 kb on + strand, within HMPREF1078_RS04670 at 175.737 kb on + strand, within HMPREF1078_RS04670 at 175.737 kb on + strand, within HMPREF1078_RS04670 at 175.738 kb on - strand, within HMPREF1078_RS04670 at 175.738 kb on - strand, within HMPREF1078_RS04670 at 175.738 kb on - strand, within HMPREF1078_RS04670
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 remove 173,461 - +0.8 173,499 - HMPREF1078_RS04660 0.13 -3.3 173,514 - HMPREF1078_RS04660 0.18 -1.1 173,833 - +1.6 173,833 - +0.8 173,836 - -3.3 173,855 - -3.6 174,143 - HMPREF1078_RS04665 0.34 -0.2 174,191 - HMPREF1078_RS04665 0.40 -1.1 174,322 - HMPREF1078_RS04665 0.54 +0.5 174,322 - HMPREF1078_RS04665 0.54 -2.2 174,322 - HMPREF1078_RS04665 0.54 -2.3 174,322 - HMPREF1078_RS04665 0.54 -1.4 174,324 - HMPREF1078_RS04665 0.54 +0.1 174,328 - HMPREF1078_RS04665 0.54 -0.9 174,328 - HMPREF1078_RS04665 0.54 +0.1 174,328 - HMPREF1078_RS04665 0.54 -2.2 174,328 - HMPREF1078_RS04665 0.54 -0.5 174,331 - HMPREF1078_RS04665 0.55 -0.5 174,331 - HMPREF1078_RS04665 0.55 -0.7 174,376 - HMPREF1078_RS04665 0.60 -2.1 174,504 - HMPREF1078_RS04665 0.73 -1.1 174,506 - HMPREF1078_RS04665 0.74 -1.1 174,510 - HMPREF1078_RS04665 0.74 -1.4 174,666 - -1.1 174,666 - -0.7 174,760 - -2.3 174,797 - +1.8 174,797 - +1.8 174,797 - +1.9 174,816 - +1.7 174,816 - +1.5 174,816 - +0.8 174,842 - -0.2 174,853 - +1.1 174,872 - +1.3 174,872 - -2.9 174,968 + -0.5 174,968 + -2.6 174,986 + -2.2 175,049 + -1.7 175,049 + -1.4 175,049 + +0.4 175,049 + -1.0 175,050 - -0.9 175,050 - +0.8 175,050 - -0.7 175,050 - -0.7 175,050 - +0.9 175,050 - -1.4 175,050 - +0.6 175,050 - +0.7 175,050 - +1.4 175,050 - -1.8 175,051 + +0.7 175,051 + +0.1 175,051 + -0.8 175,051 + +0.5 175,051 + +0.2 175,051 + +0.5 175,052 - -1.7 175,052 - -0.1 175,052 - -0.3 175,052 - -0.5 175,054 - +0.3 175,054 - +2.8 175,054 - +0.2 175,094 + -4.5 175,095 - -2.1 175,152 + -5.0 175,152 + -2.6 175,172 - -4.2 175,172 - -4.4 175,208 + -2.7 175,211 + -2.9 175,211 + -2.2 175,211 + -4.5 175,217 + -2.8 175,240 + -3.4 175,259 - -2.4 175,259 - -3.8 175,259 - -3.8 175,283 + +0.5 175,283 + -2.7 175,283 + -4.4 175,325 + -2.7 175,326 - -2.4 175,359 - -5.5 175,359 - -2.9 175,372 + -2.2 175,373 - -3.3 175,373 - -3.9 175,376 - -4.0 175,412 - -1.8 175,454 - -4.0 175,469 - -5.6 175,475 - -0.7 175,490 + -3.9 175,540 + HMPREF1078_RS04670 0.11 -3.7 175,540 + HMPREF1078_RS04670 0.11 -1.9 175,541 - HMPREF1078_RS04670 0.11 -1.5 175,541 - HMPREF1078_RS04670 0.11 +2.4 175,555 + HMPREF1078_RS04670 0.12 -4.0 175,643 + HMPREF1078_RS04670 0.14 -3.0 175,643 + HMPREF1078_RS04670 0.14 -4.7 175,643 + HMPREF1078_RS04670 0.14 +1.5 175,643 + HMPREF1078_RS04670 0.14 -1.5 175,643 + HMPREF1078_RS04670 0.14 -5.0 175,643 + HMPREF1078_RS04670 0.14 -1.9 175,643 + HMPREF1078_RS04670 0.14 -3.7 175,644 - HMPREF1078_RS04670 0.14 -1.2 175,644 - HMPREF1078_RS04670 0.14 -2.2 175,644 - HMPREF1078_RS04670 0.14 -1.7 175,647 + HMPREF1078_RS04670 0.14 -1.2 175,647 + HMPREF1078_RS04670 0.14 -3.4 175,648 - HMPREF1078_RS04670 0.14 -2.3 175,648 - HMPREF1078_RS04670 0.14 -1.3 175,661 + HMPREF1078_RS04670 0.15 -0.5 175,661 + HMPREF1078_RS04670 0.15 -1.1 175,662 - HMPREF1078_RS04670 0.15 -3.0 175,662 - HMPREF1078_RS04670 0.15 -0.6 175,662 - HMPREF1078_RS04670 0.15 -3.1 175,662 - HMPREF1078_RS04670 0.15 -3.3 175,662 - HMPREF1078_RS04670 0.15 -1.8 175,665 + HMPREF1078_RS04670 0.15 -3.5 175,665 + HMPREF1078_RS04670 0.15 +0.1 175,666 - HMPREF1078_RS04670 0.15 -3.8 175,666 - HMPREF1078_RS04670 0.15 -4.2 175,666 - HMPREF1078_RS04670 0.15 -4.1 175,666 - HMPREF1078_RS04670 0.15 -4.7 175,672 + HMPREF1078_RS04670 0.15 -3.1 175,672 + HMPREF1078_RS04670 0.15 -4.8 175,673 - HMPREF1078_RS04670 0.15 -2.5 175,735 + HMPREF1078_RS04670 0.17 -0.7 175,736 - HMPREF1078_RS04670 0.17 -5.2 175,736 - HMPREF1078_RS04670 0.17 -4.4 175,736 - HMPREF1078_RS04670 0.17 -4.1 175,736 - HMPREF1078_RS04670 0.17 -3.9 175,737 + HMPREF1078_RS04670 0.17 -4.3 175,737 + HMPREF1078_RS04670 0.17 -2.1 175,737 + HMPREF1078_RS04670 0.17 -2.7 175,737 + HMPREF1078_RS04670 0.17 -2.2 175,738 - HMPREF1078_RS04670 0.17 -3.9 175,738 - HMPREF1078_RS04670 0.17 -4.2 175,738 - HMPREF1078_RS04670 0.17 -3.7
Or see this region's nucleotide sequence