Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS04555 and HMPREF1078_RS04560 are separated by 315 nucleotides HMPREF1078_RS04560 and HMPREF1078_RS04565 are separated by 13 nucleotides
HMPREF1078_RS04555: HMPREF1078_RS04555 - HAMP domain-containing sensor histidine kinase, at 143,627 to 145,180
_RS04555
HMPREF1078_RS04560: HMPREF1078_RS04560 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 145,496 to 146,320
_RS04560
HMPREF1078_RS04565: HMPREF1078_RS04565 - GNAT family N-acetyltransferase, at 146,334 to 147,299
_RS04565
Position (kb) 145
146
147 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 144.525 kb on - strand, within HMPREF1078_RS04555 at 144.536 kb on - strand, within HMPREF1078_RS04555 at 144.631 kb on - strand, within HMPREF1078_RS04555 at 144.635 kb on - strand, within HMPREF1078_RS04555 at 144.773 kb on - strand, within HMPREF1078_RS04555 at 144.782 kb on - strand, within HMPREF1078_RS04555 at 144.782 kb on - strand, within HMPREF1078_RS04555 at 144.787 kb on + strand, within HMPREF1078_RS04555 at 144.788 kb on - strand, within HMPREF1078_RS04555 at 144.792 kb on - strand, within HMPREF1078_RS04555 at 144.796 kb on + strand, within HMPREF1078_RS04555 at 144.797 kb on - strand, within HMPREF1078_RS04555 at 144.848 kb on - strand, within HMPREF1078_RS04555 at 144.859 kb on + strand, within HMPREF1078_RS04555 at 144.860 kb on - strand, within HMPREF1078_RS04555 at 144.860 kb on - strand, within HMPREF1078_RS04555 at 144.953 kb on + strand, within HMPREF1078_RS04555 at 144.954 kb on - strand, within HMPREF1078_RS04555 at 144.957 kb on + strand, within HMPREF1078_RS04555 at 144.957 kb on + strand, within HMPREF1078_RS04555 at 144.957 kb on + strand, within HMPREF1078_RS04555 at 144.958 kb on - strand, within HMPREF1078_RS04555 at 145.094 kb on - strand at 145.094 kb on - strand at 145.097 kb on + strand at 145.098 kb on - strand at 145.098 kb on - strand at 145.098 kb on - strand at 145.098 kb on - strand at 145.102 kb on - strand at 145.163 kb on + strand at 145.180 kb on + strand at 145.186 kb on + strand at 145.187 kb on - strand at 145.308 kb on + strand at 145.331 kb on + strand at 145.331 kb on + strand at 145.332 kb on - strand at 145.332 kb on - strand at 145.332 kb on - strand at 145.351 kb on - strand at 145.351 kb on - strand at 145.358 kb on + strand at 145.374 kb on + strand at 145.384 kb on + strand at 145.396 kb on + strand at 145.396 kb on + strand at 145.396 kb on + strand at 145.397 kb on - strand at 145.424 kb on + strand at 145.461 kb on - strand at 145.466 kb on + strand at 145.466 kb on + strand at 145.481 kb on + strand at 145.501 kb on - strand at 145.514 kb on - strand at 145.521 kb on + strand at 145.537 kb on - strand at 145.539 kb on + strand at 145.603 kb on + strand, within HMPREF1078_RS04560 at 145.603 kb on + strand, within HMPREF1078_RS04560 at 145.714 kb on - strand, within HMPREF1078_RS04560 at 145.727 kb on - strand, within HMPREF1078_RS04560 at 145.749 kb on + strand, within HMPREF1078_RS04560 at 145.749 kb on + strand, within HMPREF1078_RS04560 at 145.749 kb on + strand, within HMPREF1078_RS04560 at 145.749 kb on + strand, within HMPREF1078_RS04560 at 145.750 kb on - strand, within HMPREF1078_RS04560 at 145.750 kb on - strand, within HMPREF1078_RS04560 at 145.947 kb on - strand, within HMPREF1078_RS04560 at 145.947 kb on - strand, within HMPREF1078_RS04560 at 145.986 kb on + strand, within HMPREF1078_RS04560 at 146.013 kb on + strand, within HMPREF1078_RS04560 at 146.099 kb on - strand, within HMPREF1078_RS04560 at 146.159 kb on + strand, within HMPREF1078_RS04560 at 146.160 kb on - strand, within HMPREF1078_RS04560 at 146.210 kb on + strand, within HMPREF1078_RS04560 at 146.211 kb on - strand, within HMPREF1078_RS04560 at 146.211 kb on - strand, within HMPREF1078_RS04560 at 146.211 kb on - strand, within HMPREF1078_RS04560 at 146.304 kb on - strand at 146.333 kb on + strand at 146.333 kb on + strand at 146.334 kb on - strand at 146.334 kb on - strand at 146.431 kb on + strand, within HMPREF1078_RS04565 at 146.432 kb on - strand, within HMPREF1078_RS04565 at 146.433 kb on + strand, within HMPREF1078_RS04565 at 146.433 kb on + strand, within HMPREF1078_RS04565 at 146.433 kb on + strand, within HMPREF1078_RS04565 at 146.434 kb on - strand, within HMPREF1078_RS04565 at 146.434 kb on - strand, within HMPREF1078_RS04565 at 146.434 kb on - strand, within HMPREF1078_RS04565 at 146.434 kb on - strand, within HMPREF1078_RS04565 at 146.438 kb on + strand, within HMPREF1078_RS04565 at 146.439 kb on - strand, within HMPREF1078_RS04565 at 146.509 kb on - strand, within HMPREF1078_RS04565 at 146.548 kb on - strand, within HMPREF1078_RS04565 at 146.584 kb on + strand, within HMPREF1078_RS04565 at 146.619 kb on + strand, within HMPREF1078_RS04565 at 146.674 kb on + strand, within HMPREF1078_RS04565 at 146.674 kb on + strand, within HMPREF1078_RS04565 at 146.675 kb on - strand, within HMPREF1078_RS04565 at 146.726 kb on - strand, within HMPREF1078_RS04565 at 146.730 kb on + strand, within HMPREF1078_RS04565 at 146.730 kb on + strand, within HMPREF1078_RS04565 at 146.731 kb on - strand, within HMPREF1078_RS04565 at 146.871 kb on + strand, within HMPREF1078_RS04565 at 146.871 kb on + strand, within HMPREF1078_RS04565 at 146.892 kb on + strand, within HMPREF1078_RS04565 at 146.892 kb on + strand, within HMPREF1078_RS04565 at 146.893 kb on - strand, within HMPREF1078_RS04565 at 146.902 kb on - strand, within HMPREF1078_RS04565 at 146.902 kb on - strand, within HMPREF1078_RS04565 at 146.903 kb on + strand, within HMPREF1078_RS04565 at 147.033 kb on + strand, within HMPREF1078_RS04565 at 147.034 kb on - strand, within HMPREF1078_RS04565 at 147.054 kb on + strand, within HMPREF1078_RS04565 at 147.054 kb on + strand, within HMPREF1078_RS04565 at 147.054 kb on + strand, within HMPREF1078_RS04565 at 147.055 kb on - strand, within HMPREF1078_RS04565 at 147.117 kb on + strand, within HMPREF1078_RS04565 at 147.117 kb on + strand, within HMPREF1078_RS04565 at 147.117 kb on + strand, within HMPREF1078_RS04565 at 147.117 kb on + strand, within HMPREF1078_RS04565 at 147.117 kb on + strand, within HMPREF1078_RS04565 at 147.117 kb on + strand, within HMPREF1078_RS04565 at 147.118 kb on - strand, within HMPREF1078_RS04565 at 147.118 kb on - strand, within HMPREF1078_RS04565 at 147.119 kb on + strand, within HMPREF1078_RS04565 at 147.120 kb on - strand, within HMPREF1078_RS04565 at 147.120 kb on - strand, within HMPREF1078_RS04565 at 147.120 kb on - strand, within HMPREF1078_RS04565 at 147.145 kb on + strand, within HMPREF1078_RS04565 at 147.146 kb on - strand, within HMPREF1078_RS04565 at 147.242 kb on + strand at 147.253 kb on - strand at 147.286 kb on + strand at 147.287 kb on - strand at 147.293 kb on + strand at 147.310 kb on - strand at 147.317 kb on + strand at 147.318 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 remove 144,525 - HMPREF1078_RS04555 0.58 -1.2 144,536 - HMPREF1078_RS04555 0.58 -1.9 144,631 - HMPREF1078_RS04555 0.65 -2.4 144,635 - HMPREF1078_RS04555 0.65 -4.7 144,773 - HMPREF1078_RS04555 0.74 -2.8 144,782 - HMPREF1078_RS04555 0.74 -2.7 144,782 - HMPREF1078_RS04555 0.74 +0.1 144,787 + HMPREF1078_RS04555 0.75 +0.1 144,788 - HMPREF1078_RS04555 0.75 -3.0 144,792 - HMPREF1078_RS04555 0.75 +0.1 144,796 + HMPREF1078_RS04555 0.75 +2.1 144,797 - HMPREF1078_RS04555 0.75 -2.2 144,848 - HMPREF1078_RS04555 0.79 -2.0 144,859 + HMPREF1078_RS04555 0.79 +1.1 144,860 - HMPREF1078_RS04555 0.79 -2.2 144,860 - HMPREF1078_RS04555 0.79 -3.2 144,953 + HMPREF1078_RS04555 0.85 -0.7 144,954 - HMPREF1078_RS04555 0.85 -1.6 144,957 + HMPREF1078_RS04555 0.86 +0.1 144,957 + HMPREF1078_RS04555 0.86 +0.5 144,957 + HMPREF1078_RS04555 0.86 +0.1 144,958 - HMPREF1078_RS04555 0.86 -1.6 145,094 - -2.6 145,094 - -4.4 145,097 + -0.5 145,098 - -3.1 145,098 - -3.7 145,098 - -3.5 145,098 - -2.2 145,102 - -2.1 145,163 + +2.1 145,180 + -0.2 145,186 + -0.7 145,187 - +2.5 145,308 + -1.9 145,331 + -0.4 145,331 + +1.6 145,332 - -1.0 145,332 - +0.9 145,332 - +3.0 145,351 - +0.2 145,351 - -1.7 145,358 + -2.1 145,374 + +0.9 145,384 + -2.6 145,396 + +0.1 145,396 + -1.5 145,396 + -0.2 145,397 - +0.7 145,424 + -0.9 145,461 - -0.4 145,466 + -0.9 145,466 + -0.9 145,481 + +1.2 145,501 - -1.5 145,514 - -2.7 145,521 + -0.9 145,537 - +0.9 145,539 + +0.5 145,603 + HMPREF1078_RS04560 0.13 +1.2 145,603 + HMPREF1078_RS04560 0.13 -1.0 145,714 - HMPREF1078_RS04560 0.26 +1.0 145,727 - HMPREF1078_RS04560 0.28 -0.5 145,749 + HMPREF1078_RS04560 0.31 +1.1 145,749 + HMPREF1078_RS04560 0.31 -1.4 145,749 + HMPREF1078_RS04560 0.31 -1.5 145,749 + HMPREF1078_RS04560 0.31 -0.5 145,750 - HMPREF1078_RS04560 0.31 -2.2 145,750 - HMPREF1078_RS04560 0.31 +0.7 145,947 - HMPREF1078_RS04560 0.55 -0.9 145,947 - HMPREF1078_RS04560 0.55 -0.9 145,986 + HMPREF1078_RS04560 0.59 -1.0 146,013 + HMPREF1078_RS04560 0.63 -2.7 146,099 - HMPREF1078_RS04560 0.73 -1.0 146,159 + HMPREF1078_RS04560 0.80 -3.1 146,160 - HMPREF1078_RS04560 0.80 -2.6 146,210 + HMPREF1078_RS04560 0.87 +0.7 146,211 - HMPREF1078_RS04560 0.87 -3.3 146,211 - HMPREF1078_RS04560 0.87 +0.6 146,211 - HMPREF1078_RS04560 0.87 +0.1 146,304 - -1.6 146,333 + +1.2 146,333 + +2.8 146,334 - +2.4 146,334 - -2.7 146,431 + HMPREF1078_RS04565 0.10 -4.3 146,432 - HMPREF1078_RS04565 0.10 +0.3 146,433 + HMPREF1078_RS04565 0.10 -2.4 146,433 + HMPREF1078_RS04565 0.10 -2.2 146,433 + HMPREF1078_RS04565 0.10 -2.4 146,434 - HMPREF1078_RS04565 0.10 -0.2 146,434 - HMPREF1078_RS04565 0.10 +2.1 146,434 - HMPREF1078_RS04565 0.10 -1.2 146,434 - HMPREF1078_RS04565 0.10 -1.2 146,438 + HMPREF1078_RS04565 0.11 -0.7 146,439 - HMPREF1078_RS04565 0.11 -2.9 146,509 - HMPREF1078_RS04565 0.18 -2.5 146,548 - HMPREF1078_RS04565 0.22 -3.3 146,584 + HMPREF1078_RS04565 0.26 -3.5 146,619 + HMPREF1078_RS04565 0.30 -1.9 146,674 + HMPREF1078_RS04565 0.35 -2.2 146,674 + HMPREF1078_RS04565 0.35 -2.6 146,675 - HMPREF1078_RS04565 0.35 -2.2 146,726 - HMPREF1078_RS04565 0.41 -0.0 146,730 + HMPREF1078_RS04565 0.41 -2.5 146,730 + HMPREF1078_RS04565 0.41 -2.2 146,731 - HMPREF1078_RS04565 0.41 -2.5 146,871 + HMPREF1078_RS04565 0.56 -2.5 146,871 + HMPREF1078_RS04565 0.56 -3.4 146,892 + HMPREF1078_RS04565 0.58 -1.4 146,892 + HMPREF1078_RS04565 0.58 +0.3 146,893 - HMPREF1078_RS04565 0.58 -2.5 146,902 - HMPREF1078_RS04565 0.59 +0.2 146,902 - HMPREF1078_RS04565 0.59 -0.1 146,903 + HMPREF1078_RS04565 0.59 -0.2 147,033 + HMPREF1078_RS04565 0.72 -2.5 147,034 - HMPREF1078_RS04565 0.72 +0.3 147,054 + HMPREF1078_RS04565 0.75 -1.6 147,054 + HMPREF1078_RS04565 0.75 +0.4 147,054 + HMPREF1078_RS04565 0.75 -2.9 147,055 - HMPREF1078_RS04565 0.75 -0.8 147,117 + HMPREF1078_RS04565 0.81 -0.2 147,117 + HMPREF1078_RS04565 0.81 -0.6 147,117 + HMPREF1078_RS04565 0.81 -1.0 147,117 + HMPREF1078_RS04565 0.81 -1.9 147,117 + HMPREF1078_RS04565 0.81 -3.5 147,117 + HMPREF1078_RS04565 0.81 -1.6 147,118 - HMPREF1078_RS04565 0.81 -3.2 147,118 - HMPREF1078_RS04565 0.81 -4.5 147,119 + HMPREF1078_RS04565 0.81 -1.4 147,120 - HMPREF1078_RS04565 0.81 -1.5 147,120 - HMPREF1078_RS04565 0.81 -2.7 147,120 - HMPREF1078_RS04565 0.81 +2.4 147,145 + HMPREF1078_RS04565 0.84 -0.2 147,146 - HMPREF1078_RS04565 0.84 -1.4 147,242 + -1.9 147,253 - -0.7 147,286 + +0.4 147,287 - +0.3 147,293 + +0.8 147,310 - +1.8 147,317 + -0.2 147,318 - +2.2
Or see this region's nucleotide sequence