Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS04425 and HMPREF1078_RS04430 are separated by 4 nucleotides HMPREF1078_RS04430 and HMPREF1078_RS04435 overlap by 4 nucleotides HMPREF1078_RS04435 and HMPREF1078_RS04440 are separated by 79 nucleotides
HMPREF1078_RS04425: HMPREF1078_RS04425 - lytic transglycosylase domain-containing protein, at 116,514 to 118,064
_RS04425
HMPREF1078_RS04430: HMPREF1078_RS04430 - DUF5683 domain-containing protein, at 118,069 to 118,827
_RS04430
HMPREF1078_RS04435: HMPREF1078_RS04435 - ParB/RepB/Spo0J family partition protein, at 118,824 to 119,711
_RS04435
HMPREF1078_RS04440: HMPREF1078_RS04440 - AAA family ATPase, at 119,791 to 120,555
_RS04440
Position (kb) 118
119
120 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 117.853 kb on + strand, within HMPREF1078_RS04425 at 117.854 kb on - strand, within HMPREF1078_RS04425 at 117.854 kb on - strand, within HMPREF1078_RS04425 at 117.931 kb on - strand at 117.993 kb on + strand at 117.995 kb on + strand at 117.995 kb on + strand at 118.891 kb on - strand at 118.935 kb on - strand, within HMPREF1078_RS04435 at 119.059 kb on - strand, within HMPREF1078_RS04435 at 119.059 kb on - strand, within HMPREF1078_RS04435 at 119.108 kb on - strand, within HMPREF1078_RS04435 at 119.166 kb on - strand, within HMPREF1078_RS04435 at 119.228 kb on - strand, within HMPREF1078_RS04435 at 119.323 kb on - strand, within HMPREF1078_RS04435 at 119.323 kb on - strand, within HMPREF1078_RS04435 at 119.469 kb on - strand, within HMPREF1078_RS04435 at 119.469 kb on - strand, within HMPREF1078_RS04435 at 119.469 kb on - strand, within HMPREF1078_RS04435 at 119.469 kb on - strand, within HMPREF1078_RS04435 at 119.469 kb on - strand, within HMPREF1078_RS04435 at 119.475 kb on - strand, within HMPREF1078_RS04435 at 119.475 kb on - strand, within HMPREF1078_RS04435 at 119.475 kb on - strand, within HMPREF1078_RS04435 at 119.477 kb on - strand, within HMPREF1078_RS04435 at 119.477 kb on - strand, within HMPREF1078_RS04435 at 119.477 kb on - strand, within HMPREF1078_RS04435 at 119.477 kb on - strand, within HMPREF1078_RS04435 at 119.607 kb on - strand, within HMPREF1078_RS04435 at 119.617 kb on - strand, within HMPREF1078_RS04435 at 119.628 kb on - strand at 119.628 kb on - strand at 119.712 kb on - strand at 119.747 kb on - strand at 119.773 kb on - strand at 119.773 kb on - strand at 119.780 kb on - strand at 119.780 kb on - strand at 119.780 kb on - strand at 119.780 kb on - strand at 119.807 kb on - strand at 119.862 kb on - strand at 119.911 kb on - strand, within HMPREF1078_RS04440 at 119.967 kb on - strand, within HMPREF1078_RS04440 at 119.967 kb on - strand, within HMPREF1078_RS04440 at 119.967 kb on - strand, within HMPREF1078_RS04440 at 119.967 kb on - strand, within HMPREF1078_RS04440 at 120.000 kb on - strand, within HMPREF1078_RS04440 at 120.000 kb on - strand, within HMPREF1078_RS04440 at 120.193 kb on - strand, within HMPREF1078_RS04440 at 120.193 kb on - strand, within HMPREF1078_RS04440 at 120.236 kb on - strand, within HMPREF1078_RS04440 at 120.375 kb on - strand, within HMPREF1078_RS04440 at 120.493 kb on - strand at 120.511 kb on - strand at 120.515 kb on - strand at 120.544 kb on - strand at 120.565 kb on - strand at 120.651 kb on + strand at 120.652 kb on - strand at 120.673 kb on - strand at 120.675 kb on - strand at 120.684 kb on - strand at 120.684 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 remove 117,853 + HMPREF1078_RS04425 0.86 +0.0 117,854 - HMPREF1078_RS04425 0.86 +0.7 117,854 - HMPREF1078_RS04425 0.86 -0.3 117,931 - +0.8 117,993 + +0.9 117,995 + +1.8 117,995 + -0.8 118,891 - -1.8 118,935 - HMPREF1078_RS04435 0.12 -1.5 119,059 - HMPREF1078_RS04435 0.26 -1.2 119,059 - HMPREF1078_RS04435 0.26 -3.8 119,108 - HMPREF1078_RS04435 0.32 -1.8 119,166 - HMPREF1078_RS04435 0.39 -0.2 119,228 - HMPREF1078_RS04435 0.45 -1.6 119,323 - HMPREF1078_RS04435 0.56 -1.9 119,323 - HMPREF1078_RS04435 0.56 -0.8 119,469 - HMPREF1078_RS04435 0.73 -1.1 119,469 - HMPREF1078_RS04435 0.73 -2.2 119,469 - HMPREF1078_RS04435 0.73 -1.8 119,469 - HMPREF1078_RS04435 0.73 -3.1 119,469 - HMPREF1078_RS04435 0.73 -1.2 119,475 - HMPREF1078_RS04435 0.73 -1.4 119,475 - HMPREF1078_RS04435 0.73 -2.4 119,475 - HMPREF1078_RS04435 0.73 -2.9 119,477 - HMPREF1078_RS04435 0.74 -1.7 119,477 - HMPREF1078_RS04435 0.74 -3.2 119,477 - HMPREF1078_RS04435 0.74 -2.9 119,477 - HMPREF1078_RS04435 0.74 +0.4 119,607 - HMPREF1078_RS04435 0.88 -2.1 119,617 - HMPREF1078_RS04435 0.89 -1.8 119,628 - -1.5 119,628 - -1.9 119,712 - -3.2 119,747 - -0.3 119,773 - -0.9 119,773 - -1.9 119,780 - -2.8 119,780 - -0.5 119,780 - -0.6 119,780 - -1.4 119,807 - +0.8 119,862 - -2.4 119,911 - HMPREF1078_RS04440 0.16 -1.7 119,967 - HMPREF1078_RS04440 0.23 -1.6 119,967 - HMPREF1078_RS04440 0.23 -3.8 119,967 - HMPREF1078_RS04440 0.23 -1.3 119,967 - HMPREF1078_RS04440 0.23 -2.5 120,000 - HMPREF1078_RS04440 0.27 -1.9 120,000 - HMPREF1078_RS04440 0.27 -0.9 120,193 - HMPREF1078_RS04440 0.53 -2.1 120,193 - HMPREF1078_RS04440 0.53 -2.2 120,236 - HMPREF1078_RS04440 0.58 -2.9 120,375 - HMPREF1078_RS04440 0.76 -0.2 120,493 - -2.6 120,511 - +0.6 120,515 - -0.9 120,544 - -1.3 120,565 - +0.7 120,651 + -0.9 120,652 - -2.6 120,673 - -1.0 120,675 - -0.2 120,684 - -0.8 120,684 - -1.3
Or see this region's nucleotide sequence