Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS02415 and HMPREF1078_RS02420 are separated by 5 nucleotides HMPREF1078_RS02420 and HMPREF1078_RS02425 are separated by 391 nucleotides HMPREF1078_RS02425 and HMPREF1078_RS02430 are separated by 155 nucleotides HMPREF1078_RS02430 and HMPREF1078_RS02435 are separated by 103 nucleotides
HMPREF1078_RS02415: HMPREF1078_RS02415 - Tex family protein, at 593,336 to 595,477
_RS02415
HMPREF1078_RS02420: HMPREF1078_RS02420 - Cys-tRNA(Pro) deacylase, at 595,483 to 595,965
_RS02420
HMPREF1078_RS02425: HMPREF1078_RS02425 - DUF6261 family protein, at 596,357 to 597,190
_RS02425
HMPREF1078_RS02430: HMPREF1078_RS02430 - lipocalin-like domain-containing protein, at 597,346 to 597,747
_RS02430
HMPREF1078_RS02435: HMPREF1078_RS02435 - glycoside hydrolase family 43 protein, at 597,851 to 598,963
_RS02435
Position (kb) 596
597
598 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 595.623 kb on - strand, within HMPREF1078_RS02420 at 595.661 kb on - strand, within HMPREF1078_RS02420 at 595.777 kb on + strand, within HMPREF1078_RS02420 at 595.777 kb on + strand, within HMPREF1078_RS02420 at 595.828 kb on + strand, within HMPREF1078_RS02420 at 595.831 kb on - strand, within HMPREF1078_RS02420 at 595.864 kb on + strand, within HMPREF1078_RS02420 at 595.895 kb on + strand, within HMPREF1078_RS02420 at 595.953 kb on - strand at 595.972 kb on - strand at 595.976 kb on + strand at 595.977 kb on - strand at 595.993 kb on - strand at 595.993 kb on - strand at 596.007 kb on - strand at 596.007 kb on - strand at 596.007 kb on - strand at 596.038 kb on - strand at 596.280 kb on + strand at 596.308 kb on - strand at 596.311 kb on + strand at 596.312 kb on - strand at 596.312 kb on - strand at 596.312 kb on - strand at 596.335 kb on + strand at 596.335 kb on + strand at 596.366 kb on + strand at 596.367 kb on - strand at 596.367 kb on - strand at 596.382 kb on + strand at 596.382 kb on + strand at 596.393 kb on + strand at 596.393 kb on + strand at 596.394 kb on - strand at 596.424 kb on - strand at 596.425 kb on + strand at 596.425 kb on + strand at 596.425 kb on + strand at 596.425 kb on + strand at 596.608 kb on + strand, within HMPREF1078_RS02425 at 596.669 kb on + strand, within HMPREF1078_RS02425 at 596.684 kb on - strand, within HMPREF1078_RS02425 at 596.735 kb on + strand, within HMPREF1078_RS02425 at 596.735 kb on + strand, within HMPREF1078_RS02425 at 596.736 kb on - strand, within HMPREF1078_RS02425 at 596.739 kb on + strand, within HMPREF1078_RS02425 at 596.740 kb on - strand, within HMPREF1078_RS02425 at 596.759 kb on + strand, within HMPREF1078_RS02425 at 596.759 kb on + strand, within HMPREF1078_RS02425 at 596.759 kb on + strand, within HMPREF1078_RS02425 at 596.760 kb on - strand, within HMPREF1078_RS02425 at 596.760 kb on - strand, within HMPREF1078_RS02425 at 596.761 kb on + strand, within HMPREF1078_RS02425 at 596.805 kb on + strand, within HMPREF1078_RS02425 at 596.806 kb on - strand, within HMPREF1078_RS02425 at 596.849 kb on + strand, within HMPREF1078_RS02425 at 596.876 kb on + strand, within HMPREF1078_RS02425 at 596.909 kb on + strand, within HMPREF1078_RS02425 at 596.910 kb on - strand, within HMPREF1078_RS02425 at 596.911 kb on + strand, within HMPREF1078_RS02425 at 596.912 kb on - strand, within HMPREF1078_RS02425 at 596.995 kb on - strand, within HMPREF1078_RS02425 at 596.996 kb on + strand, within HMPREF1078_RS02425 at 596.996 kb on + strand, within HMPREF1078_RS02425 at 597.029 kb on + strand, within HMPREF1078_RS02425 at 597.256 kb on - strand at 597.256 kb on - strand at 597.258 kb on - strand at 597.264 kb on - strand at 597.264 kb on - strand at 597.337 kb on - strand at 597.340 kb on + strand at 597.348 kb on - strand at 597.363 kb on + strand at 597.364 kb on - strand at 597.364 kb on - strand at 597.364 kb on - strand at 597.364 kb on - strand at 597.365 kb on + strand at 597.365 kb on + strand at 597.365 kb on + strand at 597.366 kb on - strand at 597.366 kb on - strand at 597.420 kb on + strand, within HMPREF1078_RS02430 at 597.421 kb on - strand, within HMPREF1078_RS02430 at 597.423 kb on - strand, within HMPREF1078_RS02430 at 597.450 kb on + strand, within HMPREF1078_RS02430 at 597.452 kb on + strand, within HMPREF1078_RS02430 at 597.452 kb on + strand, within HMPREF1078_RS02430 at 597.453 kb on - strand, within HMPREF1078_RS02430 at 597.530 kb on + strand, within HMPREF1078_RS02430 at 597.530 kb on + strand, within HMPREF1078_RS02430 at 597.531 kb on - strand, within HMPREF1078_RS02430 at 597.569 kb on + strand, within HMPREF1078_RS02430 at 597.569 kb on + strand, within HMPREF1078_RS02430 at 597.570 kb on - strand, within HMPREF1078_RS02430 at 597.570 kb on - strand, within HMPREF1078_RS02430 at 597.570 kb on - strand, within HMPREF1078_RS02430 at 597.570 kb on - strand, within HMPREF1078_RS02430 at 597.578 kb on + strand, within HMPREF1078_RS02430 at 597.579 kb on - strand, within HMPREF1078_RS02430 at 597.579 kb on - strand, within HMPREF1078_RS02430 at 597.583 kb on - strand, within HMPREF1078_RS02430 at 597.583 kb on - strand, within HMPREF1078_RS02430 at 597.608 kb on + strand, within HMPREF1078_RS02430 at 597.646 kb on + strand, within HMPREF1078_RS02430 at 597.667 kb on - strand, within HMPREF1078_RS02430 at 597.728 kb on - strand at 597.733 kb on + strand at 597.733 kb on + strand at 597.733 kb on + strand at 597.734 kb on - strand at 597.734 kb on - strand at 597.735 kb on + strand at 597.748 kb on - strand at 597.748 kb on - strand at 597.748 kb on - strand at 597.821 kb on - strand at 597.823 kb on + strand at 597.823 kb on + strand at 597.824 kb on - strand at 597.824 kb on - strand at 597.840 kb on - strand at 597.848 kb on + strand at 597.850 kb on + strand at 597.874 kb on - strand at 597.894 kb on + strand at 597.895 kb on - strand at 597.895 kb on - strand at 597.913 kb on - strand at 597.955 kb on + strand at 597.956 kb on - strand at 597.989 kb on + strand, within HMPREF1078_RS02435 at 597.990 kb on - strand, within HMPREF1078_RS02435 at 597.990 kb on - strand, within HMPREF1078_RS02435 at 597.993 kb on + strand, within HMPREF1078_RS02435 at 597.993 kb on + strand, within HMPREF1078_RS02435 at 597.993 kb on + strand, within HMPREF1078_RS02435 at 597.994 kb on - strand, within HMPREF1078_RS02435 at 597.994 kb on - strand, within HMPREF1078_RS02435 at 598.014 kb on + strand, within HMPREF1078_RS02435 at 598.014 kb on + strand, within HMPREF1078_RS02435 at 598.016 kb on + strand, within HMPREF1078_RS02435 at 598.016 kb on + strand, within HMPREF1078_RS02435 at 598.016 kb on + strand, within HMPREF1078_RS02435 at 598.016 kb on + strand, within HMPREF1078_RS02435 at 598.017 kb on - strand, within HMPREF1078_RS02435 at 598.017 kb on - strand, within HMPREF1078_RS02435 at 598.017 kb on - strand, within HMPREF1078_RS02435 at 598.017 kb on - strand, within HMPREF1078_RS02435 at 598.019 kb on + strand, within HMPREF1078_RS02435 at 598.019 kb on + strand, within HMPREF1078_RS02435 at 598.019 kb on + strand, within HMPREF1078_RS02435 at 598.019 kb on + strand, within HMPREF1078_RS02435 at 598.019 kb on + strand, within HMPREF1078_RS02435 at 598.019 kb on + strand, within HMPREF1078_RS02435 at 598.020 kb on - strand, within HMPREF1078_RS02435 at 598.020 kb on - strand, within HMPREF1078_RS02435 at 598.020 kb on - strand, within HMPREF1078_RS02435 at 598.020 kb on - strand, within HMPREF1078_RS02435 at 598.025 kb on + strand, within HMPREF1078_RS02435 at 598.026 kb on - strand, within HMPREF1078_RS02435 at 598.026 kb on - strand, within HMPREF1078_RS02435 at 598.064 kb on + strand, within HMPREF1078_RS02435 at 598.107 kb on + strand, within HMPREF1078_RS02435 at 598.166 kb on + strand, within HMPREF1078_RS02435 at 598.166 kb on + strand, within HMPREF1078_RS02435 at 598.167 kb on - strand, within HMPREF1078_RS02435 at 598.167 kb on - strand, within HMPREF1078_RS02435 at 598.188 kb on - strand, within HMPREF1078_RS02435 at 598.190 kb on - strand, within HMPREF1078_RS02435 at 598.190 kb on - strand, within HMPREF1078_RS02435
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 remove 595,623 - HMPREF1078_RS02420 0.29 -0.3 595,661 - HMPREF1078_RS02420 0.37 -0.9 595,777 + HMPREF1078_RS02420 0.61 -0.7 595,777 + HMPREF1078_RS02420 0.61 -2.0 595,828 + HMPREF1078_RS02420 0.71 +0.4 595,831 - HMPREF1078_RS02420 0.72 -0.8 595,864 + HMPREF1078_RS02420 0.79 +1.6 595,895 + HMPREF1078_RS02420 0.85 +0.8 595,953 - -0.9 595,972 - -3.0 595,976 + -0.7 595,977 - -0.6 595,993 - -0.6 595,993 - +0.7 596,007 - +0.2 596,007 - +1.3 596,007 - +2.3 596,038 - +0.6 596,280 + +1.1 596,308 - +2.3 596,311 + -2.4 596,312 - +0.8 596,312 - +0.3 596,312 - -0.8 596,335 + +1.0 596,335 + +1.1 596,366 + +1.4 596,367 - -1.9 596,367 - -1.2 596,382 + -0.1 596,382 + -0.9 596,393 + -2.1 596,393 + +1.0 596,394 - +0.1 596,424 - -2.1 596,425 + +0.4 596,425 + +0.6 596,425 + -0.2 596,425 + +0.4 596,608 + HMPREF1078_RS02425 0.30 +1.0 596,669 + HMPREF1078_RS02425 0.37 -2.3 596,684 - HMPREF1078_RS02425 0.39 +1.0 596,735 + HMPREF1078_RS02425 0.45 -0.4 596,735 + HMPREF1078_RS02425 0.45 +0.1 596,736 - HMPREF1078_RS02425 0.45 +4.2 596,739 + HMPREF1078_RS02425 0.46 -1.0 596,740 - HMPREF1078_RS02425 0.46 +1.7 596,759 + HMPREF1078_RS02425 0.48 +2.7 596,759 + HMPREF1078_RS02425 0.48 -0.2 596,759 + HMPREF1078_RS02425 0.48 -2.3 596,760 - HMPREF1078_RS02425 0.48 +0.7 596,760 - HMPREF1078_RS02425 0.48 +2.4 596,761 + HMPREF1078_RS02425 0.48 +2.7 596,805 + HMPREF1078_RS02425 0.54 -0.5 596,806 - HMPREF1078_RS02425 0.54 +1.0 596,849 + HMPREF1078_RS02425 0.59 -1.2 596,876 + HMPREF1078_RS02425 0.62 +0.8 596,909 + HMPREF1078_RS02425 0.66 -0.1 596,910 - HMPREF1078_RS02425 0.66 -2.8 596,911 + HMPREF1078_RS02425 0.66 -1.0 596,912 - HMPREF1078_RS02425 0.67 +0.9 596,995 - HMPREF1078_RS02425 0.76 +0.9 596,996 + HMPREF1078_RS02425 0.77 -0.4 596,996 + HMPREF1078_RS02425 0.77 -0.4 597,029 + HMPREF1078_RS02425 0.81 +1.2 597,256 - -1.1 597,256 - +0.6 597,258 - +1.8 597,264 - +0.7 597,264 - -0.9 597,337 - +0.0 597,340 + +2.0 597,348 - +1.2 597,363 + -2.9 597,364 - -3.1 597,364 - -2.3 597,364 - -2.2 597,364 - -2.6 597,365 + -1.0 597,365 + -3.3 597,365 + -1.7 597,366 - -0.4 597,366 - -2.9 597,420 + HMPREF1078_RS02430 0.18 -2.3 597,421 - HMPREF1078_RS02430 0.19 -1.3 597,423 - HMPREF1078_RS02430 0.19 -3.3 597,450 + HMPREF1078_RS02430 0.26 -2.0 597,452 + HMPREF1078_RS02430 0.26 -2.3 597,452 + HMPREF1078_RS02430 0.26 -2.6 597,453 - HMPREF1078_RS02430 0.27 -1.6 597,530 + HMPREF1078_RS02430 0.46 -1.6 597,530 + HMPREF1078_RS02430 0.46 -1.5 597,531 - HMPREF1078_RS02430 0.46 -1.2 597,569 + HMPREF1078_RS02430 0.55 -1.6 597,569 + HMPREF1078_RS02430 0.55 -3.1 597,570 - HMPREF1078_RS02430 0.56 -2.0 597,570 - HMPREF1078_RS02430 0.56 -3.1 597,570 - HMPREF1078_RS02430 0.56 -2.5 597,570 - HMPREF1078_RS02430 0.56 -1.6 597,578 + HMPREF1078_RS02430 0.58 -2.6 597,579 - HMPREF1078_RS02430 0.58 -2.6 597,579 - HMPREF1078_RS02430 0.58 -2.7 597,583 - HMPREF1078_RS02430 0.59 -2.8 597,583 - HMPREF1078_RS02430 0.59 -2.0 597,608 + HMPREF1078_RS02430 0.65 -2.7 597,646 + HMPREF1078_RS02430 0.75 -0.9 597,667 - HMPREF1078_RS02430 0.80 -3.2 597,728 - -3.1 597,733 + -1.2 597,733 + -3.0 597,733 + -2.8 597,734 - -2.3 597,734 - +0.1 597,735 + -1.5 597,748 - -1.0 597,748 - -1.7 597,748 - -0.6 597,821 - -1.7 597,823 + +1.4 597,823 + -1.2 597,824 - -1.2 597,824 - -3.1 597,840 - +1.4 597,848 + -1.7 597,850 + -0.4 597,874 - +0.5 597,894 + -0.7 597,895 - -0.8 597,895 - +1.9 597,913 - +1.5 597,955 + +1.0 597,956 - -1.7 597,989 + HMPREF1078_RS02435 0.12 -1.7 597,990 - HMPREF1078_RS02435 0.12 -0.9 597,990 - HMPREF1078_RS02435 0.12 +0.7 597,993 + HMPREF1078_RS02435 0.13 -1.8 597,993 + HMPREF1078_RS02435 0.13 -3.7 597,993 + HMPREF1078_RS02435 0.13 -0.9 597,994 - HMPREF1078_RS02435 0.13 -1.0 597,994 - HMPREF1078_RS02435 0.13 +2.5 598,014 + HMPREF1078_RS02435 0.15 -2.1 598,014 + HMPREF1078_RS02435 0.15 -0.9 598,016 + HMPREF1078_RS02435 0.15 +0.5 598,016 + HMPREF1078_RS02435 0.15 +2.5 598,016 + HMPREF1078_RS02435 0.15 -2.3 598,016 + HMPREF1078_RS02435 0.15 -3.6 598,017 - HMPREF1078_RS02435 0.15 -0.2 598,017 - HMPREF1078_RS02435 0.15 -0.4 598,017 - HMPREF1078_RS02435 0.15 +0.1 598,017 - HMPREF1078_RS02435 0.15 +1.2 598,019 + HMPREF1078_RS02435 0.15 +1.7 598,019 + HMPREF1078_RS02435 0.15 +0.4 598,019 + HMPREF1078_RS02435 0.15 -1.0 598,019 + HMPREF1078_RS02435 0.15 +2.0 598,019 + HMPREF1078_RS02435 0.15 -0.6 598,019 + HMPREF1078_RS02435 0.15 +0.1 598,020 - HMPREF1078_RS02435 0.15 +1.1 598,020 - HMPREF1078_RS02435 0.15 +2.4 598,020 - HMPREF1078_RS02435 0.15 +0.1 598,020 - HMPREF1078_RS02435 0.15 -0.9 598,025 + HMPREF1078_RS02435 0.16 -1.2 598,026 - HMPREF1078_RS02435 0.16 -0.4 598,026 - HMPREF1078_RS02435 0.16 -1.8 598,064 + HMPREF1078_RS02435 0.19 -0.6 598,107 + HMPREF1078_RS02435 0.23 +2.1 598,166 + HMPREF1078_RS02435 0.28 -0.4 598,166 + HMPREF1078_RS02435 0.28 +0.9 598,167 - HMPREF1078_RS02435 0.28 -1.3 598,167 - HMPREF1078_RS02435 0.28 +0.0 598,188 - HMPREF1078_RS02435 0.30 +2.1 598,190 - HMPREF1078_RS02435 0.30 -3.4 598,190 - HMPREF1078_RS02435 0.30 -1.1
Or see this region's nucleotide sequence