Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS02225 and HMPREF1078_RS02230 overlap by 4 nucleotides HMPREF1078_RS02230 and HMPREF1078_RS02235 are separated by 126 nucleotides
HMPREF1078_RS02225: HMPREF1078_RS02225 - guanine deaminase, at 552,201 to 553,511
_RS02225
HMPREF1078_RS02230: HMPREF1078_RS02230 - DUF5103 domain-containing protein, at 553,508 to 554,782
_RS02230
HMPREF1078_RS02235: HMPREF1078_RS02235 - Na(+)-translocating NADH-quinone reductase subunit A, at 554,909 to 556,258
_RS02235
Position (kb) 553
554
555 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 552.537 kb on - strand, within HMPREF1078_RS02225 at 552.597 kb on + strand, within HMPREF1078_RS02225 at 552.607 kb on + strand, within HMPREF1078_RS02225 at 552.608 kb on - strand, within HMPREF1078_RS02225 at 552.656 kb on + strand, within HMPREF1078_RS02225 at 552.656 kb on + strand, within HMPREF1078_RS02225 at 552.656 kb on + strand, within HMPREF1078_RS02225 at 552.656 kb on + strand, within HMPREF1078_RS02225 at 552.657 kb on - strand, within HMPREF1078_RS02225 at 552.657 kb on - strand, within HMPREF1078_RS02225 at 552.657 kb on - strand, within HMPREF1078_RS02225 at 552.657 kb on - strand, within HMPREF1078_RS02225 at 552.657 kb on - strand, within HMPREF1078_RS02225 at 552.657 kb on - strand, within HMPREF1078_RS02225 at 552.662 kb on + strand, within HMPREF1078_RS02225 at 552.873 kb on + strand, within HMPREF1078_RS02225 at 552.873 kb on + strand, within HMPREF1078_RS02225 at 552.873 kb on + strand, within HMPREF1078_RS02225 at 552.874 kb on - strand, within HMPREF1078_RS02225 at 552.874 kb on - strand, within HMPREF1078_RS02225 at 552.874 kb on - strand, within HMPREF1078_RS02225 at 552.874 kb on - strand, within HMPREF1078_RS02225 at 552.875 kb on + strand, within HMPREF1078_RS02225 at 552.875 kb on + strand, within HMPREF1078_RS02225 at 552.877 kb on + strand, within HMPREF1078_RS02225 at 552.877 kb on + strand, within HMPREF1078_RS02225 at 552.949 kb on - strand, within HMPREF1078_RS02225 at 552.959 kb on - strand, within HMPREF1078_RS02225 at 552.959 kb on - strand, within HMPREF1078_RS02225 at 552.961 kb on - strand, within HMPREF1078_RS02225 at 553.008 kb on - strand, within HMPREF1078_RS02225 at 553.074 kb on - strand, within HMPREF1078_RS02225 at 553.110 kb on - strand, within HMPREF1078_RS02225 at 553.133 kb on + strand, within HMPREF1078_RS02225 at 553.144 kb on + strand, within HMPREF1078_RS02225 at 553.206 kb on + strand, within HMPREF1078_RS02225 at 553.208 kb on + strand, within HMPREF1078_RS02225 at 553.244 kb on - strand, within HMPREF1078_RS02225 at 553.256 kb on - strand, within HMPREF1078_RS02225 at 553.256 kb on - strand, within HMPREF1078_RS02225 at 553.257 kb on + strand, within HMPREF1078_RS02225 at 553.257 kb on + strand, within HMPREF1078_RS02225 at 553.258 kb on - strand, within HMPREF1078_RS02225 at 553.258 kb on - strand, within HMPREF1078_RS02225 at 553.258 kb on - strand, within HMPREF1078_RS02225 at 553.259 kb on + strand, within HMPREF1078_RS02225 at 553.260 kb on - strand, within HMPREF1078_RS02225 at 553.280 kb on + strand, within HMPREF1078_RS02225 at 553.281 kb on - strand, within HMPREF1078_RS02225 at 553.281 kb on - strand, within HMPREF1078_RS02225 at 553.281 kb on - strand, within HMPREF1078_RS02225 at 553.347 kb on - strand, within HMPREF1078_RS02225 at 553.463 kb on + strand at 553.463 kb on + strand at 553.476 kb on + strand at 553.509 kb on + strand at 553.509 kb on + strand at 553.510 kb on - strand at 553.510 kb on - strand at 553.515 kb on - strand at 553.590 kb on + strand at 553.591 kb on - strand at 553.597 kb on + strand at 553.597 kb on + strand at 553.597 kb on + strand at 553.598 kb on - strand at 553.598 kb on - strand at 553.598 kb on - strand at 553.601 kb on + strand at 553.630 kb on - strand at 553.678 kb on - strand, within HMPREF1078_RS02230 at 553.678 kb on - strand, within HMPREF1078_RS02230 at 553.684 kb on - strand, within HMPREF1078_RS02230 at 553.709 kb on + strand, within HMPREF1078_RS02230 at 553.723 kb on - strand, within HMPREF1078_RS02230 at 553.741 kb on + strand, within HMPREF1078_RS02230 at 553.741 kb on + strand, within HMPREF1078_RS02230 at 553.777 kb on + strand, within HMPREF1078_RS02230 at 553.799 kb on + strand, within HMPREF1078_RS02230 at 553.799 kb on + strand, within HMPREF1078_RS02230 at 553.799 kb on + strand, within HMPREF1078_RS02230 at 553.800 kb on - strand, within HMPREF1078_RS02230 at 553.846 kb on + strand, within HMPREF1078_RS02230 at 553.851 kb on + strand, within HMPREF1078_RS02230 at 553.924 kb on - strand, within HMPREF1078_RS02230 at 553.929 kb on + strand, within HMPREF1078_RS02230 at 553.929 kb on + strand, within HMPREF1078_RS02230 at 553.972 kb on + strand, within HMPREF1078_RS02230 at 553.972 kb on + strand, within HMPREF1078_RS02230 at 553.972 kb on + strand, within HMPREF1078_RS02230 at 553.973 kb on - strand, within HMPREF1078_RS02230 at 553.973 kb on - strand, within HMPREF1078_RS02230 at 553.973 kb on - strand, within HMPREF1078_RS02230 at 553.977 kb on + strand, within HMPREF1078_RS02230 at 553.977 kb on + strand, within HMPREF1078_RS02230 at 553.977 kb on + strand, within HMPREF1078_RS02230 at 553.978 kb on - strand, within HMPREF1078_RS02230 at 553.978 kb on - strand, within HMPREF1078_RS02230 at 553.997 kb on - strand, within HMPREF1078_RS02230 at 554.017 kb on + strand, within HMPREF1078_RS02230 at 554.018 kb on - strand, within HMPREF1078_RS02230 at 554.020 kb on - strand, within HMPREF1078_RS02230 at 554.020 kb on - strand, within HMPREF1078_RS02230 at 554.020 kb on - strand, within HMPREF1078_RS02230 at 554.031 kb on - strand, within HMPREF1078_RS02230 at 554.091 kb on + strand, within HMPREF1078_RS02230 at 554.091 kb on + strand, within HMPREF1078_RS02230 at 554.171 kb on + strand, within HMPREF1078_RS02230 at 554.171 kb on + strand, within HMPREF1078_RS02230 at 554.172 kb on - strand, within HMPREF1078_RS02230 at 554.194 kb on - strand, within HMPREF1078_RS02230 at 554.306 kb on + strand, within HMPREF1078_RS02230 at 554.348 kb on - strand, within HMPREF1078_RS02230 at 554.359 kb on - strand, within HMPREF1078_RS02230 at 554.359 kb on - strand, within HMPREF1078_RS02230 at 554.373 kb on + strand, within HMPREF1078_RS02230 at 554.373 kb on + strand, within HMPREF1078_RS02230 at 554.373 kb on + strand, within HMPREF1078_RS02230 at 554.373 kb on + strand, within HMPREF1078_RS02230 at 554.374 kb on - strand, within HMPREF1078_RS02230 at 554.444 kb on - strand, within HMPREF1078_RS02230 at 554.497 kb on + strand, within HMPREF1078_RS02230 at 554.497 kb on + strand, within HMPREF1078_RS02230 at 554.498 kb on - strand, within HMPREF1078_RS02230 at 554.498 kb on - strand, within HMPREF1078_RS02230 at 554.498 kb on - strand, within HMPREF1078_RS02230 at 554.498 kb on - strand, within HMPREF1078_RS02230 at 554.500 kb on - strand, within HMPREF1078_RS02230 at 554.500 kb on - strand, within HMPREF1078_RS02230 at 554.555 kb on - strand, within HMPREF1078_RS02230 at 554.556 kb on + strand, within HMPREF1078_RS02230 at 554.557 kb on - strand, within HMPREF1078_RS02230 at 554.562 kb on + strand, within HMPREF1078_RS02230 at 554.562 kb on + strand, within HMPREF1078_RS02230 at 554.562 kb on + strand, within HMPREF1078_RS02230 at 554.627 kb on + strand, within HMPREF1078_RS02230 at 554.627 kb on + strand, within HMPREF1078_RS02230 at 554.628 kb on - strand, within HMPREF1078_RS02230 at 554.631 kb on + strand, within HMPREF1078_RS02230 at 554.632 kb on - strand, within HMPREF1078_RS02230 at 554.712 kb on - strand at 554.753 kb on - strand at 554.757 kb on - strand at 554.759 kb on + strand at 554.766 kb on + strand at 554.767 kb on - strand at 554.767 kb on - strand at 554.816 kb on + strand at 554.883 kb on + strand at 554.883 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 remove 552,537 - HMPREF1078_RS02225 0.26 +0.2 552,597 + HMPREF1078_RS02225 0.30 +0.2 552,607 + HMPREF1078_RS02225 0.31 +0.4 552,608 - HMPREF1078_RS02225 0.31 -1.2 552,656 + HMPREF1078_RS02225 0.35 -0.4 552,656 + HMPREF1078_RS02225 0.35 +1.2 552,656 + HMPREF1078_RS02225 0.35 +2.0 552,656 + HMPREF1078_RS02225 0.35 -0.6 552,657 - HMPREF1078_RS02225 0.35 +0.0 552,657 - HMPREF1078_RS02225 0.35 -0.5 552,657 - HMPREF1078_RS02225 0.35 -0.4 552,657 - HMPREF1078_RS02225 0.35 +0.2 552,657 - HMPREF1078_RS02225 0.35 -0.2 552,657 - HMPREF1078_RS02225 0.35 +0.8 552,662 + HMPREF1078_RS02225 0.35 +2.1 552,873 + HMPREF1078_RS02225 0.51 +0.2 552,873 + HMPREF1078_RS02225 0.51 -0.6 552,873 + HMPREF1078_RS02225 0.51 -0.8 552,874 - HMPREF1078_RS02225 0.51 +0.6 552,874 - HMPREF1078_RS02225 0.51 -2.6 552,874 - HMPREF1078_RS02225 0.51 -1.5 552,874 - HMPREF1078_RS02225 0.51 -1.8 552,875 + HMPREF1078_RS02225 0.51 +1.6 552,875 + HMPREF1078_RS02225 0.51 +1.8 552,877 + HMPREF1078_RS02225 0.52 -1.2 552,877 + HMPREF1078_RS02225 0.52 -3.5 552,949 - HMPREF1078_RS02225 0.57 +2.9 552,959 - HMPREF1078_RS02225 0.58 -0.1 552,959 - HMPREF1078_RS02225 0.58 -0.5 552,961 - HMPREF1078_RS02225 0.58 -0.6 553,008 - HMPREF1078_RS02225 0.62 +2.1 553,074 - HMPREF1078_RS02225 0.67 +1.4 553,110 - HMPREF1078_RS02225 0.69 -2.9 553,133 + HMPREF1078_RS02225 0.71 -1.1 553,144 + HMPREF1078_RS02225 0.72 +0.8 553,206 + HMPREF1078_RS02225 0.77 -1.2 553,208 + HMPREF1078_RS02225 0.77 +0.7 553,244 - HMPREF1078_RS02225 0.80 +3.7 553,256 - HMPREF1078_RS02225 0.80 +0.7 553,256 - HMPREF1078_RS02225 0.80 -1.6 553,257 + HMPREF1078_RS02225 0.81 +1.8 553,257 + HMPREF1078_RS02225 0.81 -2.2 553,258 - HMPREF1078_RS02225 0.81 +3.3 553,258 - HMPREF1078_RS02225 0.81 +1.5 553,258 - HMPREF1078_RS02225 0.81 -0.8 553,259 + HMPREF1078_RS02225 0.81 +1.7 553,260 - HMPREF1078_RS02225 0.81 +0.1 553,280 + HMPREF1078_RS02225 0.82 -2.8 553,281 - HMPREF1078_RS02225 0.82 -2.5 553,281 - HMPREF1078_RS02225 0.82 +1.4 553,281 - HMPREF1078_RS02225 0.82 +2.2 553,347 - HMPREF1078_RS02225 0.87 -0.8 553,463 + -0.2 553,463 + -0.3 553,476 + +1.7 553,509 + +3.0 553,509 + -1.3 553,510 - -0.3 553,510 - -0.5 553,515 - -3.6 553,590 + -3.1 553,591 - -3.7 553,597 + -4.5 553,597 + -1.2 553,597 + -3.3 553,598 - -3.5 553,598 - -2.3 553,598 - -2.2 553,601 + -3.1 553,630 - -0.6 553,678 - HMPREF1078_RS02230 0.13 -1.6 553,678 - HMPREF1078_RS02230 0.13 -4.3 553,684 - HMPREF1078_RS02230 0.14 -2.2 553,709 + HMPREF1078_RS02230 0.16 -2.3 553,723 - HMPREF1078_RS02230 0.17 -4.5 553,741 + HMPREF1078_RS02230 0.18 -2.0 553,741 + HMPREF1078_RS02230 0.18 -2.1 553,777 + HMPREF1078_RS02230 0.21 -5.6 553,799 + HMPREF1078_RS02230 0.23 -4.6 553,799 + HMPREF1078_RS02230 0.23 -1.8 553,799 + HMPREF1078_RS02230 0.23 -3.0 553,800 - HMPREF1078_RS02230 0.23 -2.3 553,846 + HMPREF1078_RS02230 0.27 -1.5 553,851 + HMPREF1078_RS02230 0.27 -3.1 553,924 - HMPREF1078_RS02230 0.33 +0.8 553,929 + HMPREF1078_RS02230 0.33 -3.5 553,929 + HMPREF1078_RS02230 0.33 -3.3 553,972 + HMPREF1078_RS02230 0.36 -2.7 553,972 + HMPREF1078_RS02230 0.36 -1.7 553,972 + HMPREF1078_RS02230 0.36 -3.3 553,973 - HMPREF1078_RS02230 0.36 -4.3 553,973 - HMPREF1078_RS02230 0.36 -4.1 553,973 - HMPREF1078_RS02230 0.36 -1.6 553,977 + HMPREF1078_RS02230 0.37 -3.9 553,977 + HMPREF1078_RS02230 0.37 -2.2 553,977 + HMPREF1078_RS02230 0.37 -0.8 553,978 - HMPREF1078_RS02230 0.37 -3.6 553,978 - HMPREF1078_RS02230 0.37 -2.9 553,997 - HMPREF1078_RS02230 0.38 -3.4 554,017 + HMPREF1078_RS02230 0.40 -2.9 554,018 - HMPREF1078_RS02230 0.40 +0.1 554,020 - HMPREF1078_RS02230 0.40 -0.9 554,020 - HMPREF1078_RS02230 0.40 -2.6 554,020 - HMPREF1078_RS02230 0.40 -2.3 554,031 - HMPREF1078_RS02230 0.41 -3.8 554,091 + HMPREF1078_RS02230 0.46 +0.3 554,091 + HMPREF1078_RS02230 0.46 -3.2 554,171 + HMPREF1078_RS02230 0.52 -1.9 554,171 + HMPREF1078_RS02230 0.52 -1.4 554,172 - HMPREF1078_RS02230 0.52 -1.4 554,194 - HMPREF1078_RS02230 0.54 -2.4 554,306 + HMPREF1078_RS02230 0.63 -3.7 554,348 - HMPREF1078_RS02230 0.66 -2.7 554,359 - HMPREF1078_RS02230 0.67 -3.3 554,359 - HMPREF1078_RS02230 0.67 -2.2 554,373 + HMPREF1078_RS02230 0.68 -2.3 554,373 + HMPREF1078_RS02230 0.68 -3.9 554,373 + HMPREF1078_RS02230 0.68 -4.2 554,373 + HMPREF1078_RS02230 0.68 -3.4 554,374 - HMPREF1078_RS02230 0.68 +0.3 554,444 - HMPREF1078_RS02230 0.73 -3.6 554,497 + HMPREF1078_RS02230 0.78 -3.1 554,497 + HMPREF1078_RS02230 0.78 -4.3 554,498 - HMPREF1078_RS02230 0.78 -3.0 554,498 - HMPREF1078_RS02230 0.78 -2.9 554,498 - HMPREF1078_RS02230 0.78 -3.8 554,498 - HMPREF1078_RS02230 0.78 -3.8 554,500 - HMPREF1078_RS02230 0.78 -2.1 554,500 - HMPREF1078_RS02230 0.78 -3.9 554,555 - HMPREF1078_RS02230 0.82 +0.4 554,556 + HMPREF1078_RS02230 0.82 -2.9 554,557 - HMPREF1078_RS02230 0.82 -3.9 554,562 + HMPREF1078_RS02230 0.83 -3.2 554,562 + HMPREF1078_RS02230 0.83 -0.9 554,562 + HMPREF1078_RS02230 0.83 -3.0 554,627 + HMPREF1078_RS02230 0.88 -1.2 554,627 + HMPREF1078_RS02230 0.88 -0.8 554,628 - HMPREF1078_RS02230 0.88 -2.3 554,631 + HMPREF1078_RS02230 0.88 -0.4 554,632 - HMPREF1078_RS02230 0.88 -3.5 554,712 - -2.4 554,753 - -4.3 554,757 - -2.2 554,759 + -1.7 554,766 + -3.0 554,767 - -2.6 554,767 - -1.5 554,816 + -4.0 554,883 + -0.7 554,883 + -2.3
Or see this region's nucleotide sequence