Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS02000 and HMPREF1078_RS02005 are separated by 65 nucleotides HMPREF1078_RS02005 and HMPREF1078_RS02010 are separated by 2 nucleotides HMPREF1078_RS02010 and HMPREF1078_RS02015 are separated by 108 nucleotides HMPREF1078_RS02015 and HMPREF1078_RS02020 are separated by 21 nucleotides
HMPREF1078_RS02000: HMPREF1078_RS02000 - DNA repair protein RecN, at 493,546 to 495,210
_RS02000
HMPREF1078_RS02005: HMPREF1078_RS02005 - hypothetical protein, at 495,276 to 496,052
_RS02005
HMPREF1078_RS02010: HMPREF1078_RS02010 - hypothetical protein, at 496,055 to 496,495
_RS02010
HMPREF1078_RS02015: HMPREF1078_RS02015 - 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB, at 496,604 to 497,353
_RS02015
HMPREF1078_RS02020: HMPREF1078_RS02020 - RidA family protein, at 497,375 to 497,755
_RS02020
Position (kb) 496
497 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 495.059 kb on - strand at 495.060 kb on + strand at 495.061 kb on - strand at 495.061 kb on - strand at 495.061 kb on - strand at 495.138 kb on + strand at 495.139 kb on - strand at 495.250 kb on + strand at 495.251 kb on - strand at 495.295 kb on + strand at 495.296 kb on - strand at 495.302 kb on - strand at 495.432 kb on + strand, within HMPREF1078_RS02005 at 495.437 kb on + strand, within HMPREF1078_RS02005 at 495.437 kb on + strand, within HMPREF1078_RS02005 at 495.437 kb on + strand, within HMPREF1078_RS02005 at 495.438 kb on - strand, within HMPREF1078_RS02005 at 495.520 kb on + strand, within HMPREF1078_RS02005 at 495.521 kb on - strand, within HMPREF1078_RS02005 at 495.522 kb on + strand, within HMPREF1078_RS02005 at 495.524 kb on + strand, within HMPREF1078_RS02005 at 495.524 kb on + strand, within HMPREF1078_RS02005 at 495.524 kb on + strand, within HMPREF1078_RS02005 at 495.524 kb on + strand, within HMPREF1078_RS02005 at 495.525 kb on - strand, within HMPREF1078_RS02005 at 495.560 kb on + strand, within HMPREF1078_RS02005 at 495.588 kb on + strand, within HMPREF1078_RS02005 at 495.588 kb on + strand, within HMPREF1078_RS02005 at 495.588 kb on + strand, within HMPREF1078_RS02005 at 495.589 kb on - strand, within HMPREF1078_RS02005 at 495.642 kb on + strand, within HMPREF1078_RS02005 at 495.642 kb on + strand, within HMPREF1078_RS02005 at 495.643 kb on - strand, within HMPREF1078_RS02005 at 495.648 kb on - strand, within HMPREF1078_RS02005 at 495.728 kb on + strand, within HMPREF1078_RS02005 at 495.729 kb on - strand, within HMPREF1078_RS02005 at 495.729 kb on - strand, within HMPREF1078_RS02005 at 495.737 kb on + strand, within HMPREF1078_RS02005 at 495.737 kb on + strand, within HMPREF1078_RS02005 at 495.738 kb on - strand, within HMPREF1078_RS02005 at 495.738 kb on - strand, within HMPREF1078_RS02005 at 495.771 kb on + strand, within HMPREF1078_RS02005 at 495.783 kb on + strand, within HMPREF1078_RS02005 at 495.807 kb on - strand, within HMPREF1078_RS02005 at 495.856 kb on - strand, within HMPREF1078_RS02005 at 495.908 kb on + strand, within HMPREF1078_RS02005 at 495.909 kb on - strand, within HMPREF1078_RS02005 at 495.966 kb on + strand, within HMPREF1078_RS02005 at 496.037 kb on - strand at 496.053 kb on + strand at 496.113 kb on + strand, within HMPREF1078_RS02010 at 496.113 kb on + strand, within HMPREF1078_RS02010 at 496.170 kb on - strand, within HMPREF1078_RS02010 at 496.246 kb on + strand, within HMPREF1078_RS02010 at 496.333 kb on + strand, within HMPREF1078_RS02010 at 496.334 kb on - strand, within HMPREF1078_RS02010 at 496.339 kb on + strand, within HMPREF1078_RS02010 at 496.388 kb on - strand, within HMPREF1078_RS02010 at 496.457 kb on + strand at 496.458 kb on - strand at 496.458 kb on - strand at 496.458 kb on - strand at 496.489 kb on + strand at 496.489 kb on + strand at 496.493 kb on + strand at 496.493 kb on + strand at 496.493 kb on + strand at 496.493 kb on + strand at 496.494 kb on - strand at 496.494 kb on - strand at 496.496 kb on + strand at 496.496 kb on + strand at 496.496 kb on + strand at 496.497 kb on - strand at 496.497 kb on - strand at 496.509 kb on - strand at 496.511 kb on - strand at 496.511 kb on - strand at 496.511 kb on - strand at 496.512 kb on + strand at 496.512 kb on + strand at 496.515 kb on + strand at 496.524 kb on - strand at 496.535 kb on - strand at 496.548 kb on + strand at 496.569 kb on + strand at 496.595 kb on + strand at 496.596 kb on - strand at 496.603 kb on - strand at 496.675 kb on + strand at 496.675 kb on + strand at 496.748 kb on - strand, within HMPREF1078_RS02015 at 496.749 kb on + strand, within HMPREF1078_RS02015 at 496.749 kb on + strand, within HMPREF1078_RS02015 at 496.749 kb on + strand, within HMPREF1078_RS02015 at 496.750 kb on - strand, within HMPREF1078_RS02015 at 496.755 kb on + strand, within HMPREF1078_RS02015 at 496.756 kb on - strand, within HMPREF1078_RS02015 at 496.812 kb on + strand, within HMPREF1078_RS02015 at 496.813 kb on - strand, within HMPREF1078_RS02015 at 496.816 kb on - strand, within HMPREF1078_RS02015 at 496.838 kb on + strand, within HMPREF1078_RS02015 at 496.838 kb on + strand, within HMPREF1078_RS02015 at 496.839 kb on - strand, within HMPREF1078_RS02015 at 496.839 kb on - strand, within HMPREF1078_RS02015 at 496.870 kb on - strand, within HMPREF1078_RS02015 at 496.870 kb on - strand, within HMPREF1078_RS02015 at 496.871 kb on + strand, within HMPREF1078_RS02015 at 496.871 kb on + strand, within HMPREF1078_RS02015 at 496.872 kb on - strand, within HMPREF1078_RS02015 at 496.872 kb on - strand, within HMPREF1078_RS02015 at 496.949 kb on - strand, within HMPREF1078_RS02015 at 497.049 kb on + strand, within HMPREF1078_RS02015 at 497.049 kb on + strand, within HMPREF1078_RS02015 at 497.049 kb on + strand, within HMPREF1078_RS02015 at 497.050 kb on - strand, within HMPREF1078_RS02015 at 497.050 kb on - strand, within HMPREF1078_RS02015 at 497.050 kb on - strand, within HMPREF1078_RS02015 at 497.150 kb on + strand, within HMPREF1078_RS02015 at 497.161 kb on + strand, within HMPREF1078_RS02015 at 497.166 kb on - strand, within HMPREF1078_RS02015 at 497.212 kb on + strand, within HMPREF1078_RS02015 at 497.230 kb on + strand, within HMPREF1078_RS02015 at 497.231 kb on - strand, within HMPREF1078_RS02015 at 497.267 kb on - strand, within HMPREF1078_RS02015 at 497.312 kb on + strand at 497.312 kb on + strand at 497.313 kb on - strand at 497.313 kb on - strand at 497.313 kb on - strand at 497.351 kb on + strand at 497.365 kb on + strand at 497.436 kb on + strand, within HMPREF1078_RS02020 at 497.437 kb on - strand, within HMPREF1078_RS02020 at 497.437 kb on - strand, within HMPREF1078_RS02020 at 497.449 kb on + strand, within HMPREF1078_RS02020 at 497.449 kb on + strand, within HMPREF1078_RS02020
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 remove 495,059 - +1.5 495,060 + -1.8 495,061 - +1.6 495,061 - -2.3 495,061 - +2.1 495,138 + -2.1 495,139 - -0.6 495,250 + -1.8 495,251 - -0.2 495,295 + -2.7 495,296 - -2.6 495,302 - -0.0 495,432 + HMPREF1078_RS02005 0.20 +0.4 495,437 + HMPREF1078_RS02005 0.21 -4.0 495,437 + HMPREF1078_RS02005 0.21 +1.0 495,437 + HMPREF1078_RS02005 0.21 +1.1 495,438 - HMPREF1078_RS02005 0.21 +0.5 495,520 + HMPREF1078_RS02005 0.31 +2.5 495,521 - HMPREF1078_RS02005 0.32 -2.1 495,522 + HMPREF1078_RS02005 0.32 -0.4 495,524 + HMPREF1078_RS02005 0.32 +0.9 495,524 + HMPREF1078_RS02005 0.32 -0.3 495,524 + HMPREF1078_RS02005 0.32 +0.3 495,524 + HMPREF1078_RS02005 0.32 -1.1 495,525 - HMPREF1078_RS02005 0.32 -1.1 495,560 + HMPREF1078_RS02005 0.37 -3.3 495,588 + HMPREF1078_RS02005 0.40 +0.1 495,588 + HMPREF1078_RS02005 0.40 -0.4 495,588 + HMPREF1078_RS02005 0.40 -2.4 495,589 - HMPREF1078_RS02005 0.40 +1.1 495,642 + HMPREF1078_RS02005 0.47 +1.9 495,642 + HMPREF1078_RS02005 0.47 +2.1 495,643 - HMPREF1078_RS02005 0.47 -1.6 495,648 - HMPREF1078_RS02005 0.48 -1.5 495,728 + HMPREF1078_RS02005 0.58 +0.7 495,729 - HMPREF1078_RS02005 0.58 +0.7 495,729 - HMPREF1078_RS02005 0.58 +1.4 495,737 + HMPREF1078_RS02005 0.59 +2.2 495,737 + HMPREF1078_RS02005 0.59 -0.9 495,738 - HMPREF1078_RS02005 0.59 +2.4 495,738 - HMPREF1078_RS02005 0.59 -1.2 495,771 + HMPREF1078_RS02005 0.64 -0.4 495,783 + HMPREF1078_RS02005 0.65 -0.6 495,807 - HMPREF1078_RS02005 0.68 +0.9 495,856 - HMPREF1078_RS02005 0.75 +0.6 495,908 + HMPREF1078_RS02005 0.81 +0.2 495,909 - HMPREF1078_RS02005 0.81 +0.7 495,966 + HMPREF1078_RS02005 0.89 -0.3 496,037 - +0.1 496,053 + +1.1 496,113 + HMPREF1078_RS02010 0.13 -0.1 496,113 + HMPREF1078_RS02010 0.13 +2.1 496,170 - HMPREF1078_RS02010 0.26 -1.5 496,246 + HMPREF1078_RS02010 0.43 -1.8 496,333 + HMPREF1078_RS02010 0.63 +0.3 496,334 - HMPREF1078_RS02010 0.63 -0.5 496,339 + HMPREF1078_RS02010 0.64 +1.8 496,388 - HMPREF1078_RS02010 0.76 +0.7 496,457 + +0.4 496,458 - -0.5 496,458 - +1.0 496,458 - -1.9 496,489 + -2.4 496,489 + -1.8 496,493 + -0.4 496,493 + +0.7 496,493 + +1.7 496,493 + +0.6 496,494 - -1.6 496,494 - -0.5 496,496 + -1.6 496,496 + -3.4 496,496 + -0.5 496,497 - -2.1 496,497 - -1.1 496,509 - +1.4 496,511 - +1.3 496,511 - +0.6 496,511 - -2.0 496,512 + +1.2 496,512 + -0.0 496,515 + -0.1 496,524 - -0.5 496,535 - -1.7 496,548 + -0.9 496,569 + +0.2 496,595 + -1.3 496,596 - -2.6 496,603 - +0.8 496,675 + -0.9 496,675 + -0.5 496,748 - HMPREF1078_RS02015 0.19 -0.2 496,749 + HMPREF1078_RS02015 0.19 +1.7 496,749 + HMPREF1078_RS02015 0.19 +0.0 496,749 + HMPREF1078_RS02015 0.19 +0.7 496,750 - HMPREF1078_RS02015 0.19 -1.1 496,755 + HMPREF1078_RS02015 0.20 -1.5 496,756 - HMPREF1078_RS02015 0.20 -1.8 496,812 + HMPREF1078_RS02015 0.28 -0.8 496,813 - HMPREF1078_RS02015 0.28 -1.9 496,816 - HMPREF1078_RS02015 0.28 -2.2 496,838 + HMPREF1078_RS02015 0.31 -1.2 496,838 + HMPREF1078_RS02015 0.31 -3.1 496,839 - HMPREF1078_RS02015 0.31 -0.1 496,839 - HMPREF1078_RS02015 0.31 -2.0 496,870 - HMPREF1078_RS02015 0.35 -0.4 496,870 - HMPREF1078_RS02015 0.35 -0.6 496,871 + HMPREF1078_RS02015 0.36 -2.1 496,871 + HMPREF1078_RS02015 0.36 -3.6 496,872 - HMPREF1078_RS02015 0.36 +0.3 496,872 - HMPREF1078_RS02015 0.36 -0.2 496,949 - HMPREF1078_RS02015 0.46 -2.8 497,049 + HMPREF1078_RS02015 0.59 +2.4 497,049 + HMPREF1078_RS02015 0.59 +2.8 497,049 + HMPREF1078_RS02015 0.59 -0.7 497,050 - HMPREF1078_RS02015 0.59 -0.2 497,050 - HMPREF1078_RS02015 0.59 +0.8 497,050 - HMPREF1078_RS02015 0.59 +3.0 497,150 + HMPREF1078_RS02015 0.73 -1.8 497,161 + HMPREF1078_RS02015 0.74 -1.8 497,166 - HMPREF1078_RS02015 0.75 -3.2 497,212 + HMPREF1078_RS02015 0.81 +0.7 497,230 + HMPREF1078_RS02015 0.83 -0.6 497,231 - HMPREF1078_RS02015 0.84 +1.2 497,267 - HMPREF1078_RS02015 0.88 -0.2 497,312 + -3.7 497,312 + -3.4 497,313 - +2.1 497,313 - +0.5 497,313 - +0.8 497,351 + -3.8 497,365 + -2.7 497,436 + HMPREF1078_RS02020 0.16 -2.5 497,437 - HMPREF1078_RS02020 0.16 -1.8 497,437 - HMPREF1078_RS02020 0.16 +0.6 497,449 + HMPREF1078_RS02020 0.19 -1.2 497,449 + HMPREF1078_RS02020 0.19 -3.1
Or see this region's nucleotide sequence