Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS01210 and HMPREF1078_RS01215 are separated by 122 nucleotides HMPREF1078_RS01215 and HMPREF1078_RS01220 are separated by 132 nucleotides
HMPREF1078_RS01210: HMPREF1078_RS01210 - NAD(+) synthase, at 302,154 to 304,085
_RS01210
HMPREF1078_RS01215: HMPREF1078_RS01215 - hypothetical protein, at 304,208 to 304,471
_RS01215
HMPREF1078_RS01220: HMPREF1078_RS01220 - glutamine synthetase III, at 304,604 to 306,790
_RS01220
Position (kb) 304
305 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 304.086 kb on - strand at 304.161 kb on - strand at 304.161 kb on - strand at 304.161 kb on - strand at 304.187 kb on - strand at 304.196 kb on + strand at 304.196 kb on + strand at 304.201 kb on + strand at 304.267 kb on + strand, within HMPREF1078_RS01215 at 304.267 kb on + strand, within HMPREF1078_RS01215 at 304.284 kb on - strand, within HMPREF1078_RS01215 at 304.326 kb on - strand, within HMPREF1078_RS01215 at 304.382 kb on - strand, within HMPREF1078_RS01215 at 304.383 kb on + strand, within HMPREF1078_RS01215 at 304.397 kb on - strand, within HMPREF1078_RS01215 at 304.418 kb on + strand, within HMPREF1078_RS01215 at 304.418 kb on + strand, within HMPREF1078_RS01215 at 304.418 kb on + strand, within HMPREF1078_RS01215 at 304.419 kb on - strand, within HMPREF1078_RS01215 at 304.485 kb on + strand at 304.486 kb on + strand at 304.486 kb on - strand at 304.506 kb on + strand at 304.556 kb on + strand at 304.557 kb on - strand at 304.557 kb on - strand at 304.557 kb on - strand at 304.613 kb on - strand at 304.616 kb on + strand at 304.617 kb on - strand at 304.617 kb on - strand at 304.620 kb on - strand at 304.670 kb on + strand at 304.671 kb on - strand at 304.725 kb on + strand at 304.902 kb on + strand, within HMPREF1078_RS01220 at 304.903 kb on - strand, within HMPREF1078_RS01220 at 305.008 kb on - strand, within HMPREF1078_RS01220 at 305.228 kb on + strand, within HMPREF1078_RS01220 at 305.231 kb on + strand, within HMPREF1078_RS01220 at 305.413 kb on + strand, within HMPREF1078_RS01220 at 305.414 kb on - strand, within HMPREF1078_RS01220 at 305.414 kb on - strand, within HMPREF1078_RS01220
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 remove 304,086 - +3.6 304,161 - -0.1 304,161 - -1.9 304,161 - -1.2 304,187 - +0.0 304,196 + -1.7 304,196 + -3.1 304,201 + -3.3 304,267 + HMPREF1078_RS01215 0.22 -3.9 304,267 + HMPREF1078_RS01215 0.22 -2.7 304,284 - HMPREF1078_RS01215 0.29 -3.1 304,326 - HMPREF1078_RS01215 0.45 -0.3 304,382 - HMPREF1078_RS01215 0.66 -0.7 304,383 + HMPREF1078_RS01215 0.66 -3.1 304,397 - HMPREF1078_RS01215 0.72 +0.7 304,418 + HMPREF1078_RS01215 0.80 -2.9 304,418 + HMPREF1078_RS01215 0.80 -0.3 304,418 + HMPREF1078_RS01215 0.80 -2.5 304,419 - HMPREF1078_RS01215 0.80 -1.2 304,485 + -1.4 304,486 + -0.9 304,486 - -2.1 304,506 + -2.6 304,556 + +1.9 304,557 - -3.0 304,557 - -0.6 304,557 - -1.5 304,613 - +3.8 304,616 + +1.9 304,617 - +2.6 304,617 - -1.4 304,620 - -1.0 304,670 + +0.7 304,671 - -0.9 304,725 + +0.6 304,902 + HMPREF1078_RS01220 0.14 +2.3 304,903 - HMPREF1078_RS01220 0.14 +0.7 305,008 - HMPREF1078_RS01220 0.18 -2.3 305,228 + HMPREF1078_RS01220 0.29 -3.5 305,231 + HMPREF1078_RS01220 0.29 +0.6 305,413 + HMPREF1078_RS01220 0.37 +0.4 305,414 - HMPREF1078_RS01220 0.37 -0.5 305,414 - HMPREF1078_RS01220 0.37 +1.3
Or see this region's nucleotide sequence