Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS01205

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS01200 and HMPREF1078_RS01205 are separated by 73 nucleotidesHMPREF1078_RS01205 and HMPREF1078_RS01210 are separated by 676 nucleotides HMPREF1078_RS01200: HMPREF1078_RS01200 - DEAD/DEAH box helicase, at 298,735 to 299,994 _RS01200 HMPREF1078_RS01205: HMPREF1078_RS01205 - Gfo/Idh/MocA family oxidoreductase, at 300,068 to 301,477 _RS01205 HMPREF1078_RS01210: HMPREF1078_RS01210 - NAD(+) synthase, at 302,154 to 304,085 _RS01210 Position (kb) 300 301 302Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 299.108 kb on + strand, within HMPREF1078_RS01200at 299.108 kb on + strand, within HMPREF1078_RS01200at 299.108 kb on + strand, within HMPREF1078_RS01200at 299.109 kb on - strand, within HMPREF1078_RS01200at 299.109 kb on - strand, within HMPREF1078_RS01200at 299.109 kb on - strand, within HMPREF1078_RS01200at 299.114 kb on + strand, within HMPREF1078_RS01200at 299.114 kb on + strand, within HMPREF1078_RS01200at 299.164 kb on - strand, within HMPREF1078_RS01200at 299.176 kb on - strand, within HMPREF1078_RS01200at 299.258 kb on + strand, within HMPREF1078_RS01200at 299.385 kb on + strand, within HMPREF1078_RS01200at 299.490 kb on + strand, within HMPREF1078_RS01200at 299.491 kb on - strand, within HMPREF1078_RS01200at 299.491 kb on - strand, within HMPREF1078_RS01200at 299.604 kb on + strand, within HMPREF1078_RS01200at 299.604 kb on + strand, within HMPREF1078_RS01200at 299.613 kb on + strand, within HMPREF1078_RS01200at 299.613 kb on + strand, within HMPREF1078_RS01200at 299.614 kb on - strand, within HMPREF1078_RS01200at 299.689 kb on + strand, within HMPREF1078_RS01200at 299.706 kb on - strand, within HMPREF1078_RS01200at 299.716 kb on + strand, within HMPREF1078_RS01200at 299.716 kb on + strand, within HMPREF1078_RS01200at 299.716 kb on + strand, within HMPREF1078_RS01200at 299.717 kb on - strand, within HMPREF1078_RS01200at 299.717 kb on - strand, within HMPREF1078_RS01200at 299.717 kb on - strand, within HMPREF1078_RS01200at 299.736 kb on + strand, within HMPREF1078_RS01200at 299.807 kb on - strand, within HMPREF1078_RS01200at 299.853 kb on + strand, within HMPREF1078_RS01200at 299.853 kb on + strand, within HMPREF1078_RS01200at 299.853 kb on + strand, within HMPREF1078_RS01200at 299.853 kb on + strand, within HMPREF1078_RS01200at 299.854 kb on - strand, within HMPREF1078_RS01200at 299.931 kb on + strandat 299.932 kb on - strandat 299.932 kb on - strandat 299.971 kb on - strandat 299.992 kb on + strandat 299.993 kb on - strandat 300.000 kb on + strandat 300.012 kb on + strandat 300.012 kb on + strandat 300.012 kb on + strandat 300.012 kb on + strandat 300.012 kb on + strandat 300.012 kb on + strandat 300.013 kb on - strandat 300.013 kb on - strandat 300.013 kb on - strandat 300.013 kb on - strandat 300.013 kb on - strandat 300.014 kb on + strandat 300.014 kb on + strandat 300.014 kb on + strandat 300.014 kb on + strandat 300.015 kb on - strandat 300.015 kb on - strandat 300.030 kb on + strandat 300.030 kb on + strandat 300.031 kb on - strandat 300.031 kb on - strandat 300.143 kb on - strandat 300.143 kb on - strandat 300.158 kb on - strandat 300.163 kb on + strandat 300.175 kb on + strandat 300.175 kb on + strandat 300.222 kb on + strand, within HMPREF1078_RS01205at 300.222 kb on + strand, within HMPREF1078_RS01205at 300.222 kb on + strand, within HMPREF1078_RS01205at 300.223 kb on - strand, within HMPREF1078_RS01205at 300.265 kb on + strand, within HMPREF1078_RS01205at 300.265 kb on + strand, within HMPREF1078_RS01205at 300.265 kb on + strand, within HMPREF1078_RS01205at 300.265 kb on + strand, within HMPREF1078_RS01205at 300.266 kb on - strand, within HMPREF1078_RS01205at 300.266 kb on - strand, within HMPREF1078_RS01205at 300.266 kb on - strand, within HMPREF1078_RS01205at 300.266 kb on - strand, within HMPREF1078_RS01205at 300.266 kb on - strand, within HMPREF1078_RS01205at 300.269 kb on - strand, within HMPREF1078_RS01205at 300.340 kb on + strand, within HMPREF1078_RS01205at 300.340 kb on + strand, within HMPREF1078_RS01205at 300.353 kb on - strand, within HMPREF1078_RS01205at 300.384 kb on + strand, within HMPREF1078_RS01205at 300.384 kb on + strand, within HMPREF1078_RS01205at 300.385 kb on - strand, within HMPREF1078_RS01205at 300.385 kb on - strand, within HMPREF1078_RS01205at 300.385 kb on - strand, within HMPREF1078_RS01205at 300.385 kb on - strand, within HMPREF1078_RS01205at 300.386 kb on + strand, within HMPREF1078_RS01205at 300.386 kb on + strand, within HMPREF1078_RS01205at 300.386 kb on + strand, within HMPREF1078_RS01205at 300.386 kb on + strand, within HMPREF1078_RS01205at 300.386 kb on + strand, within HMPREF1078_RS01205at 300.386 kb on + strand, within HMPREF1078_RS01205at 300.386 kb on + strand, within HMPREF1078_RS01205at 300.387 kb on - strand, within HMPREF1078_RS01205at 300.387 kb on - strand, within HMPREF1078_RS01205at 300.388 kb on + strand, within HMPREF1078_RS01205at 300.388 kb on + strand, within HMPREF1078_RS01205at 300.388 kb on + strand, within HMPREF1078_RS01205at 300.388 kb on + strand, within HMPREF1078_RS01205at 300.388 kb on + strand, within HMPREF1078_RS01205at 300.388 kb on + strand, within HMPREF1078_RS01205at 300.388 kb on + strand, within HMPREF1078_RS01205at 300.512 kb on + strand, within HMPREF1078_RS01205at 300.583 kb on + strand, within HMPREF1078_RS01205at 300.584 kb on - strand, within HMPREF1078_RS01205at 300.698 kb on + strand, within HMPREF1078_RS01205at 300.736 kb on + strand, within HMPREF1078_RS01205at 300.743 kb on + strand, within HMPREF1078_RS01205at 300.743 kb on + strand, within HMPREF1078_RS01205at 300.743 kb on + strand, within HMPREF1078_RS01205at 300.745 kb on + strand, within HMPREF1078_RS01205at 300.745 kb on + strand, within HMPREF1078_RS01205at 300.745 kb on + strand, within HMPREF1078_RS01205at 300.745 kb on + strand, within HMPREF1078_RS01205at 300.745 kb on + strand, within HMPREF1078_RS01205at 300.746 kb on - strand, within HMPREF1078_RS01205at 300.746 kb on - strand, within HMPREF1078_RS01205at 300.749 kb on + strand, within HMPREF1078_RS01205at 300.768 kb on + strand, within HMPREF1078_RS01205at 300.769 kb on - strand, within HMPREF1078_RS01205at 300.769 kb on - strand, within HMPREF1078_RS01205at 300.779 kb on - strand, within HMPREF1078_RS01205at 300.880 kb on - strand, within HMPREF1078_RS01205at 300.919 kb on + strand, within HMPREF1078_RS01205at 300.919 kb on + strand, within HMPREF1078_RS01205at 300.920 kb on - strand, within HMPREF1078_RS01205at 300.947 kb on - strand, within HMPREF1078_RS01205at 300.947 kb on - strand, within HMPREF1078_RS01205at 300.947 kb on - strand, within HMPREF1078_RS01205at 301.071 kb on - strand, within HMPREF1078_RS01205at 301.125 kb on + strand, within HMPREF1078_RS01205at 301.149 kb on + strand, within HMPREF1078_RS01205at 301.150 kb on - strand, within HMPREF1078_RS01205at 301.150 kb on - strand, within HMPREF1078_RS01205at 301.151 kb on + strand, within HMPREF1078_RS01205at 301.151 kb on + strand, within HMPREF1078_RS01205at 301.152 kb on - strand, within HMPREF1078_RS01205at 301.152 kb on - strand, within HMPREF1078_RS01205at 301.277 kb on + strand, within HMPREF1078_RS01205at 301.277 kb on + strand, within HMPREF1078_RS01205at 301.277 kb on + strand, within HMPREF1078_RS01205at 301.278 kb on - strand, within HMPREF1078_RS01205at 301.313 kb on - strand, within HMPREF1078_RS01205at 301.330 kb on + strand, within HMPREF1078_RS01205at 301.330 kb on + strand, within HMPREF1078_RS01205at 301.330 kb on + strand, within HMPREF1078_RS01205at 301.330 kb on + strand, within HMPREF1078_RS01205at 301.331 kb on - strand, within HMPREF1078_RS01205at 301.331 kb on - strand, within HMPREF1078_RS01205at 301.340 kb on + strandat 301.340 kb on + strandat 301.340 kb on + strandat 301.340 kb on + strandat 301.341 kb on - strandat 301.364 kb on - strandat 301.364 kb on - strandat 301.364 kb on - strandat 301.426 kb on - strandat 301.475 kb on + strandat 301.475 kb on + strandat 301.475 kb on + strandat 301.489 kb on + strandat 301.489 kb on + strandat 301.490 kb on - strandat 301.544 kb on + strandat 301.544 kb on + strandat 301.544 kb on + strandat 301.545 kb on - strandat 301.546 kb on + strandat 301.546 kb on + strandat 301.546 kb on + strandat 301.546 kb on + strandat 301.546 kb on + strandat 301.547 kb on - strandat 301.547 kb on - strandat 301.547 kb on - strandat 301.547 kb on - strandat 301.547 kb on - strandat 301.551 kb on - strandat 301.592 kb on + strandat 301.592 kb on + strandat 301.593 kb on - strandat 301.593 kb on - strandat 301.593 kb on - strandat 301.603 kb on - strandat 301.622 kb on + strandat 301.691 kb on + strandat 301.692 kb on - strandat 301.693 kb on + strandat 301.694 kb on - strandat 301.696 kb on - strandat 301.696 kb on - strandat 301.696 kb on - strandat 301.697 kb on + strandat 301.697 kb on + strandat 301.697 kb on - strandat 301.698 kb on - strandat 301.698 kb on - strandat 301.711 kb on - strandat 301.901 kb on + strandat 301.908 kb on - strandat 301.916 kb on - strandat 301.916 kb on - strandat 301.920 kb on - strandat 301.920 kb on - strandat 301.920 kb on - strandat 301.923 kb on + strandat 301.923 kb on + strandat 301.926 kb on + strandat 301.926 kb on + strandat 301.927 kb on - strandat 301.927 kb on - strandat 301.927 kb on - strandat 301.928 kb on + strandat 301.928 kb on + strandat 301.930 kb on + strandat 301.931 kb on - strandat 301.931 kb on - strandat 301.931 kb on - strandat 301.932 kb on + strandat 301.932 kb on + strandat 301.932 kb on + strandat 301.933 kb on - strandat 301.933 kb on - strandat 301.933 kb on - strandat 301.933 kb on - strandat 301.933 kb on - strandat 302.019 kb on + strandat 302.020 kb on - strandat 302.025 kb on + strandat 302.025 kb on + strandat 302.025 kb on + strandat 302.025 kb on + strandat 302.025 kb on + strandat 302.025 kb on + strandat 302.025 kb on + strandat 302.025 kb on + strandat 302.025 kb on + strandat 302.026 kb on - strandat 302.026 kb on - strandat 302.026 kb on - strandat 302.029 kb on + strandat 302.036 kb on - strandat 302.036 kb on - strandat 302.047 kb on + strandat 302.053 kb on + strandat 302.078 kb on - strandat 302.125 kb on + strandat 302.125 kb on + strandat 302.155 kb on + strandat 302.156 kb on + strandat 302.156 kb on - strandat 302.157 kb on + strandat 302.158 kb on - strandat 302.158 kb on - strandat 302.158 kb on - strandat 302.158 kb on - strandat 302.158 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3
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299,108 + HMPREF1078_RS01200 0.30 +3.5
299,108 + HMPREF1078_RS01200 0.30 +2.2
299,108 + HMPREF1078_RS01200 0.30 -0.2
299,109 - HMPREF1078_RS01200 0.30 +2.8
299,109 - HMPREF1078_RS01200 0.30 +0.3
299,109 - HMPREF1078_RS01200 0.30 +3.3
299,114 + HMPREF1078_RS01200 0.30 +1.1
299,114 + HMPREF1078_RS01200 0.30 -1.3
299,164 - HMPREF1078_RS01200 0.34 +3.4
299,176 - HMPREF1078_RS01200 0.35 +1.9
299,258 + HMPREF1078_RS01200 0.42 +1.0
299,385 + HMPREF1078_RS01200 0.52 -0.6
299,490 + HMPREF1078_RS01200 0.60 -0.8
299,491 - HMPREF1078_RS01200 0.60 +0.3
299,491 - HMPREF1078_RS01200 0.60 -0.1
299,604 + HMPREF1078_RS01200 0.69 -3.5
299,604 + HMPREF1078_RS01200 0.69 -0.9
299,613 + HMPREF1078_RS01200 0.70 +0.4
299,613 + HMPREF1078_RS01200 0.70 +0.7
299,614 - HMPREF1078_RS01200 0.70 +1.8
299,689 + HMPREF1078_RS01200 0.76 +1.4
299,706 - HMPREF1078_RS01200 0.77 -3.3
299,716 + HMPREF1078_RS01200 0.78 +0.8
299,716 + HMPREF1078_RS01200 0.78 +1.2
299,716 + HMPREF1078_RS01200 0.78 -1.9
299,717 - HMPREF1078_RS01200 0.78 +1.5
299,717 - HMPREF1078_RS01200 0.78 +0.8
299,717 - HMPREF1078_RS01200 0.78 +1.0
299,736 + HMPREF1078_RS01200 0.79 -0.7
299,807 - HMPREF1078_RS01200 0.85 -0.8
299,853 + HMPREF1078_RS01200 0.89 +1.4
299,853 + HMPREF1078_RS01200 0.89 +1.4
299,853 + HMPREF1078_RS01200 0.89 +0.7
299,853 + HMPREF1078_RS01200 0.89 +1.1
299,854 - HMPREF1078_RS01200 0.89 +0.1
299,931 + +1.0
299,932 - -1.5
299,932 - -0.7
299,971 - -2.0
299,992 + -0.1
299,993 - +1.3
300,000 + -1.8
300,012 + +0.3
300,012 + +1.8
300,012 + +0.0
300,012 + -1.1
300,012 + -0.8
300,012 + -1.9
300,013 - +2.5
300,013 - -0.3
300,013 - -2.4
300,013 - -2.2
300,013 - -0.4
300,014 + -1.1
300,014 + +1.8
300,014 + -0.1
300,014 + +2.7
300,015 - -2.0
300,015 - +0.8
300,030 + -1.6
300,030 + +0.3
300,031 - -0.4
300,031 - -2.4
300,143 - +2.3
300,143 - -2.4
300,158 - -0.3
300,163 + -3.2
300,175 + -1.3
300,175 + -1.1
300,222 + HMPREF1078_RS01205 0.11 +0.6
300,222 + HMPREF1078_RS01205 0.11 +0.2
300,222 + HMPREF1078_RS01205 0.11 -4.5
300,223 - HMPREF1078_RS01205 0.11 -1.9
300,265 + HMPREF1078_RS01205 0.14 -2.1
300,265 + HMPREF1078_RS01205 0.14 -3.0
300,265 + HMPREF1078_RS01205 0.14 -1.8
300,265 + HMPREF1078_RS01205 0.14 -1.8
300,266 - HMPREF1078_RS01205 0.14 +1.3
300,266 - HMPREF1078_RS01205 0.14 -0.4
300,266 - HMPREF1078_RS01205 0.14 -4.0
300,266 - HMPREF1078_RS01205 0.14 -0.6
300,266 - HMPREF1078_RS01205 0.14 -0.6
300,269 - HMPREF1078_RS01205 0.14 -3.0
300,340 + HMPREF1078_RS01205 0.19 -1.8
300,340 + HMPREF1078_RS01205 0.19 -0.9
300,353 - HMPREF1078_RS01205 0.20 -1.3
300,384 + HMPREF1078_RS01205 0.22 -2.9
300,384 + HMPREF1078_RS01205 0.22 -0.9
300,385 - HMPREF1078_RS01205 0.22 +0.3
300,385 - HMPREF1078_RS01205 0.22 -1.5
300,385 - HMPREF1078_RS01205 0.22 +0.2
300,385 - HMPREF1078_RS01205 0.22 +1.9
300,386 + HMPREF1078_RS01205 0.23 -2.1
300,386 + HMPREF1078_RS01205 0.23 -4.5
300,386 + HMPREF1078_RS01205 0.23 -3.2
300,386 + HMPREF1078_RS01205 0.23 -1.0
300,386 + HMPREF1078_RS01205 0.23 -3.4
300,386 + HMPREF1078_RS01205 0.23 -0.6
300,386 + HMPREF1078_RS01205 0.23 -1.6
300,387 - HMPREF1078_RS01205 0.23 -0.7
300,387 - HMPREF1078_RS01205 0.23 -4.1
300,388 + HMPREF1078_RS01205 0.23 -4.4
300,388 + HMPREF1078_RS01205 0.23 -0.8
300,388 + HMPREF1078_RS01205 0.23 +0.7
300,388 + HMPREF1078_RS01205 0.23 -1.2
300,388 + HMPREF1078_RS01205 0.23 -1.8
300,388 + HMPREF1078_RS01205 0.23 -0.2
300,388 + HMPREF1078_RS01205 0.23 -3.7
300,512 + HMPREF1078_RS01205 0.31 -3.2
300,583 + HMPREF1078_RS01205 0.37 -3.3
300,584 - HMPREF1078_RS01205 0.37 -1.5
300,698 + HMPREF1078_RS01205 0.45 +0.0
300,736 + HMPREF1078_RS01205 0.47 +0.3
300,743 + HMPREF1078_RS01205 0.48 -2.9
300,743 + HMPREF1078_RS01205 0.48 -1.3
300,743 + HMPREF1078_RS01205 0.48 -2.2
300,745 + HMPREF1078_RS01205 0.48 +0.3
300,745 + HMPREF1078_RS01205 0.48 +0.7
300,745 + HMPREF1078_RS01205 0.48 +2.3
300,745 + HMPREF1078_RS01205 0.48 -0.6
300,745 + HMPREF1078_RS01205 0.48 -1.9
300,746 - HMPREF1078_RS01205 0.48 +0.4
300,746 - HMPREF1078_RS01205 0.48 -2.2
300,749 + HMPREF1078_RS01205 0.48 -0.7
300,768 + HMPREF1078_RS01205 0.50 -0.9
300,769 - HMPREF1078_RS01205 0.50 +0.6
300,769 - HMPREF1078_RS01205 0.50 -1.4
300,779 - HMPREF1078_RS01205 0.50 -2.8
300,880 - HMPREF1078_RS01205 0.58 -1.8
300,919 + HMPREF1078_RS01205 0.60 -2.4
300,919 + HMPREF1078_RS01205 0.60 -0.8
300,920 - HMPREF1078_RS01205 0.60 -0.9
300,947 - HMPREF1078_RS01205 0.62 -2.6
300,947 - HMPREF1078_RS01205 0.62 -0.3
300,947 - HMPREF1078_RS01205 0.62 -0.5
301,071 - HMPREF1078_RS01205 0.71 -0.6
301,125 + HMPREF1078_RS01205 0.75 +1.5
301,149 + HMPREF1078_RS01205 0.77 -1.3
301,150 - HMPREF1078_RS01205 0.77 -3.0
301,150 - HMPREF1078_RS01205 0.77 -2.1
301,151 + HMPREF1078_RS01205 0.77 -0.6
301,151 + HMPREF1078_RS01205 0.77 -3.2
301,152 - HMPREF1078_RS01205 0.77 -3.1
301,152 - HMPREF1078_RS01205 0.77 -0.5
301,277 + HMPREF1078_RS01205 0.86 -2.9
301,277 + HMPREF1078_RS01205 0.86 -1.3
301,277 + HMPREF1078_RS01205 0.86 -2.8
301,278 - HMPREF1078_RS01205 0.86 -1.0
301,313 - HMPREF1078_RS01205 0.88 -4.3
301,330 + HMPREF1078_RS01205 0.90 -0.4
301,330 + HMPREF1078_RS01205 0.90 -1.7
301,330 + HMPREF1078_RS01205 0.90 -0.7
301,330 + HMPREF1078_RS01205 0.90 -2.1
301,331 - HMPREF1078_RS01205 0.90 -0.9
301,331 - HMPREF1078_RS01205 0.90 -0.3
301,340 + +0.7
301,340 + -1.3
301,340 + -3.2
301,340 + -0.2
301,341 - -2.0
301,364 - +0.3
301,364 - +1.1
301,364 - +2.0
301,426 - -3.1
301,475 + -2.6
301,475 + +0.2
301,475 + -0.0
301,489 + -0.3
301,489 + +1.0
301,490 - +0.4
301,544 + -0.4
301,544 + +2.5
301,544 + -0.3
301,545 - -0.9
301,546 + +1.1
301,546 + -0.3
301,546 + +2.0
301,546 + -0.0
301,546 + +0.1
301,547 - +0.6
301,547 - +1.5
301,547 - -0.6
301,547 - +1.1
301,547 - -0.6
301,551 - -1.1
301,592 + +2.3
301,592 + -2.6
301,593 - +0.7
301,593 - -1.6
301,593 - -3.1
301,603 - +1.7
301,622 + +2.4
301,691 + +3.0
301,692 - +1.3
301,693 + +0.4
301,694 - -0.2
301,696 - +0.3
301,696 - -0.1
301,696 - +2.3
301,697 + +1.8
301,697 + +0.7
301,697 - +0.6
301,698 - -0.5
301,698 - -1.6
301,711 - -1.9
301,901 + +2.6
301,908 - +2.4
301,916 - +2.3
301,916 - -0.5
301,920 - +1.2
301,920 - -1.0
301,920 - +2.0
301,923 + -1.0
301,923 + -0.9
301,926 + +1.1
301,926 + +0.0
301,927 - +3.1
301,927 - +0.7
301,927 - +0.5
301,928 + -1.6
301,928 + -1.8
301,930 + +0.3
301,931 - +3.6
301,931 - -0.2
301,931 - -2.4
301,932 + +0.3
301,932 + -1.0
301,932 + +0.0
301,933 - -1.0
301,933 - -1.4
301,933 - +0.5
301,933 - +3.4
301,933 - -1.9
302,019 + -1.6
302,020 - +0.7
302,025 + +3.1
302,025 + -3.2
302,025 + +0.1
302,025 + +0.6
302,025 + +2.5
302,025 + -2.4
302,025 + +1.4
302,025 + -0.7
302,025 + +1.0
302,026 - +1.3
302,026 - -3.4
302,026 - +1.4
302,029 + +0.7
302,036 - +0.5
302,036 - +0.8
302,047 + +0.3
302,053 + -0.0
302,078 - +1.5
302,125 + -0.4
302,125 + -0.9
302,155 + -1.3
302,156 + -1.8
302,156 - -0.7
302,157 + -2.2
302,158 - -0.5
302,158 - -1.5
302,158 - -2.0
302,158 - -1.2
302,158 - +3.3

Or see this region's nucleotide sequence