Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS00990 and HMPREF1078_RS00995 are separated by 408 nucleotides HMPREF1078_RS00995 and HMPREF1078_RS01000 are separated by 41 nucleotides HMPREF1078_RS01000 and HMPREF1078_RS01005 are separated by 7 nucleotides
HMPREF1078_RS00990: HMPREF1078_RS00990 - DUF6261 family protein, at 242,269 to 243,105
_RS00990
HMPREF1078_RS00995: HMPREF1078_RS00995 - BlaI/MecI/CopY family transcriptional regulator, at 243,514 to 243,888
_RS00995
HMPREF1078_RS01000: HMPREF1078_RS01000 - M56 family metallopeptidase, at 243,930 to 245,138
_RS01000
HMPREF1078_RS01005: HMPREF1078_RS01005 - DUF4934 domain-containing protein, at 245,146 to 246,384
_RS01005
Position (kb) 243
244
245
246 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3
4 at 242.998 kb on + strand, within HMPREF1078_RS00990 at 243.077 kb on - strand at 243.083 kb on - strand at 243.114 kb on - strand at 243.114 kb on - strand at 243.117 kb on - strand at 243.510 kb on + strand at 243.681 kb on + strand, within HMPREF1078_RS00995 at 243.681 kb on + strand, within HMPREF1078_RS00995 at 243.681 kb on + strand, within HMPREF1078_RS00995 at 243.682 kb on - strand, within HMPREF1078_RS00995 at 243.682 kb on - strand, within HMPREF1078_RS00995 at 243.682 kb on - strand, within HMPREF1078_RS00995 at 243.693 kb on + strand, within HMPREF1078_RS00995 at 243.694 kb on - strand, within HMPREF1078_RS00995 at 243.694 kb on - strand, within HMPREF1078_RS00995 at 243.698 kb on - strand, within HMPREF1078_RS00995 at 243.698 kb on - strand, within HMPREF1078_RS00995 at 243.703 kb on + strand, within HMPREF1078_RS00995 at 243.703 kb on + strand, within HMPREF1078_RS00995 at 243.704 kb on - strand, within HMPREF1078_RS00995 at 243.704 kb on - strand, within HMPREF1078_RS00995 at 243.706 kb on + strand, within HMPREF1078_RS00995 at 243.706 kb on + strand, within HMPREF1078_RS00995 at 243.707 kb on - strand, within HMPREF1078_RS00995 at 243.707 kb on - strand, within HMPREF1078_RS00995 at 243.766 kb on + strand, within HMPREF1078_RS00995 at 243.766 kb on + strand, within HMPREF1078_RS00995 at 243.781 kb on + strand, within HMPREF1078_RS00995 at 243.793 kb on - strand, within HMPREF1078_RS00995 at 243.793 kb on - strand, within HMPREF1078_RS00995 at 243.848 kb on + strand, within HMPREF1078_RS00995 at 243.848 kb on + strand, within HMPREF1078_RS00995 at 243.849 kb on - strand, within HMPREF1078_RS00995 at 243.906 kb on - strand at 243.947 kb on - strand at 243.947 kb on - strand at 243.984 kb on + strand at 243.984 kb on + strand at 243.985 kb on - strand at 244.017 kb on - strand at 244.038 kb on - strand at 244.084 kb on + strand, within HMPREF1078_RS01000 at 244.085 kb on - strand, within HMPREF1078_RS01000 at 244.218 kb on + strand, within HMPREF1078_RS01000 at 244.218 kb on + strand, within HMPREF1078_RS01000 at 244.218 kb on + strand, within HMPREF1078_RS01000 at 244.371 kb on + strand, within HMPREF1078_RS01000 at 244.373 kb on + strand, within HMPREF1078_RS01000 at 244.374 kb on - strand, within HMPREF1078_RS01000 at 244.379 kb on + strand, within HMPREF1078_RS01000 at 244.463 kb on + strand, within HMPREF1078_RS01000 at 244.464 kb on - strand, within HMPREF1078_RS01000 at 244.551 kb on + strand, within HMPREF1078_RS01000 at 244.551 kb on + strand, within HMPREF1078_RS01000 at 244.552 kb on - strand, within HMPREF1078_RS01000 at 244.609 kb on + strand, within HMPREF1078_RS01000 at 244.649 kb on + strand, within HMPREF1078_RS01000 at 244.649 kb on + strand, within HMPREF1078_RS01000 at 244.674 kb on - strand, within HMPREF1078_RS01000 at 244.694 kb on + strand, within HMPREF1078_RS01000 at 244.743 kb on + strand, within HMPREF1078_RS01000 at 244.814 kb on + strand, within HMPREF1078_RS01000 at 244.914 kb on - strand, within HMPREF1078_RS01000 at 244.991 kb on + strand, within HMPREF1078_RS01000 at 245.051 kb on + strand at 245.306 kb on - strand, within HMPREF1078_RS01005 at 245.354 kb on - strand, within HMPREF1078_RS01005 at 245.583 kb on + strand, within HMPREF1078_RS01005 at 245.584 kb on - strand, within HMPREF1078_RS01005 at 245.638 kb on + strand, within HMPREF1078_RS01005 at 245.666 kb on - strand, within HMPREF1078_RS01005 at 245.725 kb on + strand, within HMPREF1078_RS01005 at 245.841 kb on + strand, within HMPREF1078_RS01005 at 245.908 kb on + strand, within HMPREF1078_RS01005 at 245.924 kb on - strand, within HMPREF1078_RS01005 at 245.931 kb on + strand, within HMPREF1078_RS01005 at 245.932 kb on - strand, within HMPREF1078_RS01005 at 245.996 kb on - strand, within HMPREF1078_RS01005 at 246.039 kb on + strand, within HMPREF1078_RS01005 at 246.039 kb on + strand, within HMPREF1078_RS01005 at 246.040 kb on - strand, within HMPREF1078_RS01005 at 246.040 kb on - strand, within HMPREF1078_RS01005 at 246.040 kb on - strand, within HMPREF1078_RS01005 at 246.124 kb on + strand, within HMPREF1078_RS01005 at 246.124 kb on + strand, within HMPREF1078_RS01005 at 246.125 kb on - strand, within HMPREF1078_RS01005 at 246.136 kb on + strand, within HMPREF1078_RS01005
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 remove 242,998 + HMPREF1078_RS00990 0.87 +0.5 243,077 - +1.5 243,083 - -0.7 243,114 - +0.4 243,114 - -0.7 243,117 - +0.9 243,510 + -1.5 243,681 + HMPREF1078_RS00995 0.45 +1.7 243,681 + HMPREF1078_RS00995 0.45 +0.2 243,681 + HMPREF1078_RS00995 0.45 -0.9 243,682 - HMPREF1078_RS00995 0.45 -1.5 243,682 - HMPREF1078_RS00995 0.45 -6.1 243,682 - HMPREF1078_RS00995 0.45 -0.4 243,693 + HMPREF1078_RS00995 0.48 -3.9 243,694 - HMPREF1078_RS00995 0.48 -1.1 243,694 - HMPREF1078_RS00995 0.48 -1.7 243,698 - HMPREF1078_RS00995 0.49 -1.1 243,698 - HMPREF1078_RS00995 0.49 -1.6 243,703 + HMPREF1078_RS00995 0.50 +0.5 243,703 + HMPREF1078_RS00995 0.50 -0.6 243,704 - HMPREF1078_RS00995 0.51 +1.5 243,704 - HMPREF1078_RS00995 0.51 +1.7 243,706 + HMPREF1078_RS00995 0.51 +0.9 243,706 + HMPREF1078_RS00995 0.51 -2.7 243,707 - HMPREF1078_RS00995 0.51 -0.0 243,707 - HMPREF1078_RS00995 0.51 +1.1 243,766 + HMPREF1078_RS00995 0.67 -3.4 243,766 + HMPREF1078_RS00995 0.67 +0.1 243,781 + HMPREF1078_RS00995 0.71 +1.2 243,793 - HMPREF1078_RS00995 0.74 -0.1 243,793 - HMPREF1078_RS00995 0.74 -0.9 243,848 + HMPREF1078_RS00995 0.89 +0.3 243,848 + HMPREF1078_RS00995 0.89 +1.7 243,849 - HMPREF1078_RS00995 0.89 -1.2 243,906 - +1.8 243,947 - -1.3 243,947 - -0.2 243,984 + -0.7 243,984 + -2.9 243,985 - -1.8 244,017 - +0.6 244,038 - +0.7 244,084 + HMPREF1078_RS01000 0.13 +0.7 244,085 - HMPREF1078_RS01000 0.13 +3.0 244,218 + HMPREF1078_RS01000 0.24 +2.9 244,218 + HMPREF1078_RS01000 0.24 +1.7 244,218 + HMPREF1078_RS01000 0.24 -1.5 244,371 + HMPREF1078_RS01000 0.36 -0.7 244,373 + HMPREF1078_RS01000 0.37 -1.6 244,374 - HMPREF1078_RS01000 0.37 -1.5 244,379 + HMPREF1078_RS01000 0.37 -0.9 244,463 + HMPREF1078_RS01000 0.44 -2.7 244,464 - HMPREF1078_RS01000 0.44 -1.3 244,551 + HMPREF1078_RS01000 0.51 -0.1 244,551 + HMPREF1078_RS01000 0.51 -0.4 244,552 - HMPREF1078_RS01000 0.51 +1.8 244,609 + HMPREF1078_RS01000 0.56 -1.7 244,649 + HMPREF1078_RS01000 0.59 +1.8 244,649 + HMPREF1078_RS01000 0.59 +0.9 244,674 - HMPREF1078_RS01000 0.62 +2.5 244,694 + HMPREF1078_RS01000 0.63 +2.3 244,743 + HMPREF1078_RS01000 0.67 +1.7 244,814 + HMPREF1078_RS01000 0.73 -0.9 244,914 - HMPREF1078_RS01000 0.81 +0.7 244,991 + HMPREF1078_RS01000 0.88 +1.2 245,051 + -0.6 245,306 - HMPREF1078_RS01005 0.13 +0.2 245,354 - HMPREF1078_RS01005 0.17 -1.2 245,583 + HMPREF1078_RS01005 0.35 +2.1 245,584 - HMPREF1078_RS01005 0.35 +0.3 245,638 + HMPREF1078_RS01005 0.40 +1.1 245,666 - HMPREF1078_RS01005 0.42 -1.6 245,725 + HMPREF1078_RS01005 0.47 +3.9 245,841 + HMPREF1078_RS01005 0.56 +2.7 245,908 + HMPREF1078_RS01005 0.62 -3.5 245,924 - HMPREF1078_RS01005 0.63 -1.5 245,931 + HMPREF1078_RS01005 0.63 +2.5 245,932 - HMPREF1078_RS01005 0.63 +1.2 245,996 - HMPREF1078_RS01005 0.69 +0.3 246,039 + HMPREF1078_RS01005 0.72 -0.4 246,039 + HMPREF1078_RS01005 0.72 +1.2 246,040 - HMPREF1078_RS01005 0.72 +0.7 246,040 - HMPREF1078_RS01005 0.72 -0.5 246,040 - HMPREF1078_RS01005 0.72 -1.8 246,124 + HMPREF1078_RS01005 0.79 +0.7 246,124 + HMPREF1078_RS01005 0.79 -2.1 246,125 - HMPREF1078_RS01005 0.79 +1.6 246,136 + HMPREF1078_RS01005 0.80 +0.8
Or see this region's nucleotide sequence